Wall clock time and date at job start Tue Mar 31 2020 06:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47963 * 110.99991 * 2 1 4 4 C 1.53941 * 86.17755 * 222.41621 * 3 2 1 5 5 C 1.53001 * 113.73302 * 138.07882 * 4 3 2 6 6 N 1.46493 * 109.47366 * 176.89946 * 5 4 3 7 7 C 1.39672 * 120.00299 * 179.97438 * 6 5 4 8 8 C 1.38170 * 119.98933 * 6.08267 * 7 6 5 9 9 C 1.41130 * 119.50286 * 179.97438 * 8 7 6 10 10 C 1.40363 * 120.24813 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00170 * 23.96926 * 10 9 8 12 12 C 1.46524 * 119.99490 * 203.96859 * 10 9 8 13 13 N 1.29514 * 120.00389 * 15.32158 * 12 10 9 14 14 Si 1.86800 * 119.99764 * 195.31360 * 12 10 9 15 15 H 1.48504 * 109.47056 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47310 * 119.99899 * 14 12 10 17 17 H 1.48502 * 109.47292 * 240.00308 * 14 12 10 18 18 C 1.41339 * 119.49803 * 359.73602 * 9 8 7 19 19 C 1.36484 * 119.95933 * 0.50959 * 18 9 8 20 20 C 1.38663 * 120.50442 * 359.48824 * 19 18 9 21 21 N 1.48014 * 119.74463 * 180.25414 * 20 19 18 22 22 O 1.31699 * 120.00000 * 353.67853 * 21 20 19 23 23 O 1.31701 * 120.00233 * 173.68316 * 21 20 19 24 24 C 1.48194 * 111.07236 * 260.56437 * 2 1 3 25 25 H 1.09000 * 109.46742 * 60.00228 * 1 2 3 26 26 H 1.08999 * 109.47057 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47120 * 300.00142 * 1 2 3 28 28 H 1.08999 * 113.76412 * 108.09930 * 3 2 1 29 29 H 1.08997 * 113.85625 * 336.74338 * 3 2 1 30 30 H 1.09003 * 113.73209 * 269.25025 * 4 3 2 31 31 H 1.09007 * 109.47383 * 56.89614 * 5 4 3 32 32 H 1.09000 * 109.47276 * 296.89764 * 5 4 3 33 33 H 0.97008 * 119.99732 * 359.97438 * 6 5 4 34 34 H 1.07998 * 120.24759 * 359.97399 * 8 7 6 35 35 H 0.97004 * 119.99541 * 180.02562 * 13 12 10 36 36 H 1.08003 * 120.02198 * 180.29131 * 18 9 8 37 37 H 1.08001 * 119.75133 * 179.75419 * 19 18 9 38 38 H 1.08992 * 113.75677 * 23.23574 * 24 2 1 39 39 H 1.09002 * 113.82234 * 251.80734 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3814 0.0000 4 6 3.0211 0.8792 -1.0360 5 6 3.2611 1.8569 -2.1882 6 7 4.2978 1.3222 -3.0745 7 6 4.6903 2.0430 -4.2046 8 6 4.1940 3.3144 -4.4196 9 6 4.5979 4.0337 -5.5647 10 6 4.1030 5.3262 -5.7988 11 1 3.7450 5.9250 -4.9743 12 6 4.0722 5.8631 -7.1618 13 7 4.2135 5.0680 -8.1744 14 14 3.8288 7.6943 -7.4390 15 1 3.6936 8.3796 -6.1286 16 1 5.0005 8.2449 -8.1664 17 1 2.5993 7.9142 -8.2423 18 6 5.5083 3.4448 -6.4713 19 6 5.9814 2.1855 -6.2407 20 6 5.5840 1.4794 -5.1154 21 7 6.1119 0.1170 -4.8790 22 8 6.8557 -0.4691 -5.7943 23 8 5.8378 -0.5094 -3.7533 24 6 2.0018 -0.2267 -1.3641 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 2.4460 1.6804 0.9482 29 1 1.3022 2.1211 -0.3936 30 1 3.9459 0.5068 -0.5953 31 1 3.5853 2.8176 -1.7880 32 1 2.3366 1.9906 -2.7498 33 1 4.7117 0.4675 -2.8764 34 1 3.5022 3.7544 -3.7167 35 1 4.1935 5.4236 -9.0767 36 1 5.8267 3.9895 -7.3479 37 1 6.6738 1.7371 -6.9378 38 1 1.3043 0.0403 -2.1579 39 1 2.4506 -1.2102 -1.5037 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170256622.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:17 Heat of formation + Delta-G solvation = 49.771971 kcal Electronic energy + Delta-G solvation = -22813.412996 eV Core-core repulsion = 19338.874966 eV Total energy + Delta-G solvation = -3474.538029 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.10949 -40.40865 -38.50409 -37.00303 -35.64234 -34.56390 -32.66223 -32.19643 -29.94852 -28.63921 -27.34433 -27.01902 -25.38364 -23.77206 -22.77637 -22.10091 -20.70925 -19.79300 -18.86044 -18.46856 -17.56196 -17.17757 -16.91237 -16.55809 -16.34534 -15.91605 -15.70616 -15.10282 -14.94736 -14.78921 -14.61153 -14.04911 -13.94360 -13.68663 -13.46832 -13.08050 -12.94924 -12.89197 -12.39049 -12.28778 -11.98682 -11.83575 -11.73693 -11.64586 -11.59887 -11.44676 -11.42269 -11.24234 -10.84399 -10.06033 -9.83543 -9.25137 -8.51507 -6.88384 -1.05770 0.78172 1.09650 1.12681 1.40268 1.54275 1.64201 2.07831 2.31021 2.54853 2.92058 3.28138 3.49222 3.69971 3.95088 4.12658 4.25486 4.27222 4.41713 4.45552 4.48409 4.52231 4.60287 4.62195 4.69629 4.76876 4.82896 4.86550 4.91356 4.96788 5.11942 5.23594 5.30904 5.42826 5.56673 5.59849 5.75543 6.01205 6.03674 6.23962 6.30925 6.56119 6.64129 6.99890 7.62840 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013027 B = 0.004606 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.840386 B = 6077.371107 C = 7922.411260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.501 5.501 3 C 0.023 3.977 4 C -0.125 4.125 5 C 0.131 3.869 6 N -0.734 5.734 7 C 0.278 3.722 8 C -0.305 4.305 9 C 0.085 3.915 10 C -0.319 4.319 11 H 0.133 0.867 12 C 0.023 3.977 13 N -0.722 5.722 14 Si 1.008 2.992 15 H -0.239 1.239 16 H -0.259 1.259 17 H -0.258 1.258 18 C -0.135 4.135 19 C -0.079 4.079 20 C -0.132 4.132 21 N 0.054 4.946 22 O -0.413 6.413 23 O -0.394 6.394 24 C 0.004 3.996 25 H 0.040 0.960 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.103 0.897 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.407 0.593 34 H 0.141 0.859 35 H 0.323 0.677 36 H 0.140 0.860 37 H 0.113 0.887 38 H 0.076 0.924 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.230 10.408 6.387 15.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 N -0.224 5.224 3 C -0.106 4.106 4 C -0.144 4.144 5 C 0.007 3.993 6 N -0.379 5.379 7 C 0.167 3.833 8 C -0.334 4.334 9 C 0.079 3.921 10 C -0.343 4.343 11 H 0.150 0.850 12 C -0.209 4.209 13 N -0.341 5.341 14 Si 0.824 3.176 15 H -0.161 1.161 16 H -0.183 1.183 17 H -0.182 1.182 18 C -0.157 4.157 19 C -0.099 4.099 20 C -0.248 4.248 21 N 0.440 4.560 22 O -0.543 6.543 23 O -0.520 6.520 24 C -0.125 4.125 25 H 0.059 0.941 26 H 0.088 0.912 27 H 0.101 0.899 28 H 0.121 0.879 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.256 0.744 34 H 0.158 0.842 35 H 0.137 0.863 36 H 0.157 0.843 37 H 0.131 0.869 38 H 0.094 0.906 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.133 9.693 6.841 15.602 hybrid contribution 0.281 -0.473 -1.113 1.242 sum -9.853 9.220 5.727 14.659 Atomic orbital electron populations 1.22906 0.88437 1.02792 1.01930 1.68488 1.10455 1.19393 1.24051 1.23958 0.95783 0.91312 0.99509 1.23132 0.99095 0.96238 0.95934 1.21518 0.90606 0.97308 0.89890 1.46282 1.42491 1.25277 1.23807 1.17456 0.89176 0.91599 0.85036 1.20470 1.14039 0.93116 1.05740 1.17973 0.89861 0.93195 0.91041 1.22364 1.21201 0.96405 0.94367 0.84968 1.28911 0.90971 1.06805 0.94233 1.69088 1.19755 1.42149 1.03096 0.84710 0.79644 0.72118 0.81079 1.16102 1.18335 1.18247 1.21380 0.99336 0.93824 1.01187 1.20044 1.00284 0.95175 0.94442 1.20176 1.15552 0.83140 1.05903 1.49862 1.01557 1.04080 1.00516 1.96037 1.46138 1.72470 1.39649 1.95581 1.73078 1.69273 1.14069 1.24092 0.97021 0.99948 0.91446 0.94139 0.91205 0.89936 0.87863 0.89163 0.88942 0.90555 0.91781 0.74354 0.84167 0.86255 0.84290 0.86915 0.90630 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.21 9.65 127.69 1.23 1.02 16 2 N -0.50 -11.43 6.55 -933.41 -6.12 -17.55 16 3 C 0.02 0.45 7.55 86.41 0.65 1.11 16 4 C -0.12 -3.18 3.93 -10.15 -0.04 -3.22 16 5 C 0.13 3.78 4.79 86.38 0.41 4.19 16 6 N -0.73 -29.39 5.62 -339.55 -1.91 -31.30 16 7 C 0.28 12.49 6.63 38.18 0.25 12.75 16 8 C -0.31 -12.25 9.08 22.96 0.21 -12.04 16 9 C 0.08 3.46 5.62 -21.29 -0.12 3.34 16 10 C -0.32 -11.09 9.32 24.95 0.23 -10.86 16 11 H 0.13 3.92 7.98 -2.91 -0.02 3.89 16 12 C 0.02 0.71 5.36 87.20 0.47 1.18 16 13 N -0.72 -24.99 10.93 23.21 0.25 -24.74 16 14 Si 1.01 22.21 29.67 68.60 2.04 24.24 16 15 H -0.24 -4.97 7.11 99.48 0.71 -4.26 16 16 H -0.26 -5.74 7.11 99.48 0.71 -5.03 16 17 H -0.26 -5.60 7.11 99.48 0.71 -4.89 16 18 C -0.13 -5.89 8.72 22.62 0.20 -5.69 16 19 C -0.08 -3.84 9.50 21.96 0.21 -3.63 16 20 C -0.13 -6.79 6.92 36.78 0.25 -6.54 16 21 N 0.05 3.14 4.98 -45.50 -0.23 2.91 16 22 O -0.41 -25.50 19.14 3.52 0.07 -25.43 16 23 O -0.39 -22.43 16.29 3.51 0.06 -22.38 16 24 C 0.00 0.10 7.54 86.36 0.65 0.75 16 25 H 0.04 0.68 7.63 -2.39 -0.02 0.66 16 26 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.09 1.46 7.88 -2.39 -0.02 1.44 16 30 H 0.09 2.61 8.14 -2.39 -0.02 2.60 16 31 H 0.08 1.99 7.71 -2.38 -0.02 1.97 16 32 H 0.06 1.77 7.87 -2.39 -0.02 1.75 16 33 H 0.41 18.04 4.67 -112.89 -0.53 17.51 16 34 H 0.14 4.77 6.72 -2.91 -0.02 4.75 16 35 H 0.32 9.40 8.27 -92.71 -0.77 8.64 16 36 H 0.14 5.79 6.07 -2.91 -0.02 5.77 16 37 H 0.11 5.48 7.57 -2.91 -0.02 5.46 16 38 H 0.08 1.88 7.40 -2.39 -0.02 1.86 16 39 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -62.80 329.60 -0.67 -63.47 By element: Atomic # 1 Polarization: 47.86 SS G_CDS: 0.56 Total: 48.41 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: 4.61 Total: -17.64 kcal Atomic # 7 Polarization: -62.68 SS G_CDS: -8.00 Total: -70.68 kcal Atomic # 8 Polarization: -47.93 SS G_CDS: 0.12 Total: -47.81 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: 2.04 Total: 24.24 kcal Total: -62.80 -0.67 -63.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170256622.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.242 kcal (2) G-P(sol) polarization free energy of solvation -62.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds