Wall clock time and date at job start Tue Mar 31 2020 06:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21285 * 120.00213 * 2 1 4 4 N 1.34778 * 120.00085 * 179.97438 * 2 1 3 5 5 C 1.46500 * 120.00249 * 180.02562 * 4 2 1 6 6 H 1.09004 * 112.84628 * 336.19559 * 5 4 2 7 7 C 1.53777 * 113.69542 * 107.46102 * 5 4 2 8 8 C 1.53780 * 87.08115 * 89.12709 * 7 5 4 9 9 H 1.08997 * 113.61803 * 270.88801 * 8 7 5 10 10 N 1.46501 * 113.61509 * 139.98271 * 8 7 5 11 11 C 1.39125 * 119.99801 * 107.50374 * 10 8 7 12 12 C 1.39165 * 119.63367 * 359.72662 * 11 10 8 13 13 C 1.38204 * 119.17033 * 179.74509 * 12 11 10 14 14 C 1.39446 * 118.45123 * 0.52208 * 13 12 11 15 15 O 1.35813 * 120.40771 * 179.76968 * 14 13 12 16 16 C 1.34812 * 116.99956 * 354.49352 * 15 14 13 17 17 H 1.07998 * 119.99843 * 5.05824 * 16 15 14 18 18 C 1.38630 * 120.00027 * 185.05617 * 16 15 14 19 19 N 1.31577 * 119.99723 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99962 * 0.02562 * 18 16 15 21 21 H 1.48489 * 109.47631 * 89.99735 * 20 18 16 22 22 H 1.48502 * 109.46887 * 209.99720 * 20 18 16 23 23 H 1.48499 * 109.47259 * 329.98914 * 20 18 16 24 24 C 1.38670 * 119.19188 * 359.74447 * 14 13 12 25 25 N 1.31937 * 120.75329 * 359.97438 * 24 14 13 26 26 C 1.53775 * 113.61724 * 205.00121 * 5 4 2 27 27 H 1.08999 * 109.47221 * 240.00409 * 1 2 3 28 28 H 1.09001 * 109.46811 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47065 * 119.99888 * 1 2 3 30 30 H 0.97002 * 119.99999 * 359.97438 * 4 2 1 31 31 H 1.08998 * 113.61802 * 203.67843 * 7 5 4 32 32 H 1.08999 * 113.61116 * 334.49865 * 7 5 4 33 33 H 0.97001 * 120.00199 * 287.50523 * 10 8 7 34 34 H 1.07999 * 120.41311 * 0.02562 * 12 11 10 35 35 H 1.08002 * 120.77820 * 180.23793 * 13 12 11 36 36 H 0.97006 * 119.99692 * 180.02562 * 19 18 16 37 37 H 1.07997 * 119.62704 * 180.02562 * 24 14 13 38 38 H 1.09000 * 113.61366 * 25.34315 * 26 5 4 39 39 H 1.09000 * 113.61821 * 156.24765 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 1 4.0693 -0.2483 -0.4044 7 6 4.2634 -1.5895 1.3447 8 6 4.2106 -3.0358 0.8248 9 1 3.2750 -3.5472 1.0508 10 7 5.3924 -3.8282 1.1735 11 6 5.3021 -4.8225 2.1424 12 6 4.0867 -5.0541 2.7795 13 6 4.0064 -6.0477 3.7367 14 6 5.1571 -6.7764 4.0359 15 8 5.1244 -7.7587 4.9732 16 6 3.9762 -7.9076 5.6639 17 1 3.1100 -7.3167 5.4053 18 6 3.9074 -8.8193 6.7060 19 7 2.7870 -8.9642 7.3803 20 14 5.4058 -9.8409 7.1536 21 1 6.2129 -9.1177 8.1688 22 1 4.9669 -11.1465 7.7086 23 1 6.2289 -10.0710 5.9391 24 6 6.3351 -6.4863 3.3643 25 7 6.3745 -5.5342 2.4517 26 6 4.2622 -2.4443 -0.5939 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3633 1.0277 0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 1.6959 -2.0073 0.0013 31 1 5.2763 -1.2166 1.4961 32 1 3.6130 -1.4077 2.2003 33 1 6.2379 -3.6597 0.7289 34 1 3.2160 -4.4676 2.5258 35 1 3.0754 -6.2520 4.2445 36 1 2.7390 -9.6019 8.1098 37 1 7.2303 -7.0466 3.5902 38 1 3.6103 -2.9541 -1.3033 39 1 5.2748 -2.3052 -0.9724 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170585971.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:07 Heat of formation + Delta-G solvation = 2.921360 kcal Electronic energy + Delta-G solvation = -22087.305707 eV Core-core repulsion = 18610.736083 eV Total energy + Delta-G solvation = -3476.569624 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.59830 -39.69938 -38.61837 -37.28595 -34.45648 -32.82233 -32.29245 -31.41531 -29.90416 -28.16486 -26.00279 -25.24941 -24.38174 -22.89158 -21.33662 -21.26377 -19.68671 -18.19476 -17.60589 -17.31578 -16.55046 -16.31263 -16.13627 -15.51719 -14.83504 -14.78028 -14.40650 -14.23811 -13.93843 -13.50194 -13.25345 -13.08493 -12.87097 -12.84386 -12.57394 -12.46090 -12.32829 -12.26758 -12.01309 -11.50421 -11.14617 -10.90389 -10.76023 -10.30425 -10.20184 -9.66978 -9.47923 -9.31498 -9.08869 -8.88893 -8.66833 -6.82887 -6.43092 -4.08036 1.89022 2.25223 2.31918 2.84171 3.21540 3.25662 3.39878 3.48482 4.17549 4.22847 4.27819 4.47748 4.53860 4.70823 4.74790 4.85873 4.91326 5.02572 5.08452 5.17651 5.33383 5.41121 5.43771 5.52942 5.61693 5.64882 5.73674 5.80337 5.81147 5.89844 6.26123 6.37116 6.64362 6.97721 6.99946 7.16324 7.51180 7.65518 7.90561 7.93729 8.03714 8.75758 8.92400 9.53754 10.64862 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.025115 B = 0.002910 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.595769 B = 9618.192806 C =10523.314326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.513 3.487 3 O -0.547 6.547 4 N -0.715 5.715 5 C 0.119 3.881 6 H 0.106 0.894 7 C -0.168 4.168 8 C 0.144 3.856 9 H 0.104 0.896 10 N -0.725 5.725 11 C 0.316 3.684 12 C -0.186 4.186 13 C -0.141 4.141 14 C 0.069 3.931 15 O -0.217 6.217 16 C -0.389 4.389 17 H 0.102 0.898 18 C 0.063 3.937 19 N -0.882 5.882 20 Si 0.906 3.094 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.259 1.259 24 C 0.069 3.931 25 N -0.503 5.503 26 C -0.152 4.152 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.403 0.597 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.398 0.602 34 H 0.118 0.882 35 H 0.142 0.858 36 H 0.279 0.721 37 H 0.151 0.849 38 H 0.078 0.922 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.353 12.843 -15.274 20.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.300 3.700 3 O -0.424 6.424 4 N -0.367 5.367 5 C 0.013 3.987 6 H 0.124 0.876 7 C -0.209 4.209 8 C 0.036 3.964 9 H 0.121 0.879 10 N -0.362 5.362 11 C 0.084 3.916 12 C -0.210 4.210 13 C -0.168 4.168 14 C 0.015 3.985 15 O -0.122 6.122 16 C -0.465 4.465 17 H 0.120 0.880 18 C -0.140 4.140 19 N -0.520 5.520 20 Si 0.732 3.268 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.183 1.183 24 C -0.090 4.090 25 N -0.220 5.220 26 C -0.192 4.192 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.237 0.763 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.233 0.767 34 H 0.136 0.864 35 H 0.160 0.840 36 H 0.089 0.911 37 H 0.169 0.831 38 H 0.097 0.903 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.272 13.505 -15.410 20.530 hybrid contribution -0.416 -1.008 0.690 1.290 sum -1.688 12.497 -14.721 19.383 Atomic orbital electron populations 1.21933 0.91446 1.05659 1.04473 1.20856 0.90662 0.83385 0.75048 1.90729 1.70894 1.31433 1.49314 1.45772 1.06462 1.08933 1.75486 1.21683 0.80079 0.99406 0.97525 0.87632 1.24074 1.02132 0.97134 0.97595 1.22331 0.90183 0.89886 0.93993 0.87853 1.43946 1.11386 1.37727 1.43171 1.18002 0.89911 0.91392 0.92307 1.21139 0.97043 1.02024 1.00829 1.21524 0.99626 0.96703 0.98938 1.19979 0.94375 0.91046 0.93122 1.83584 1.38258 1.45417 1.44892 1.20682 0.88290 1.24418 1.13063 0.88019 1.24439 0.97966 0.97010 0.94623 1.69656 1.25618 1.35747 1.21018 0.86168 0.82065 0.79019 0.79594 1.19904 1.20858 1.18266 1.21453 0.96019 0.96586 0.94906 1.66946 1.29470 1.08137 1.17408 1.23752 1.02397 0.95720 0.97289 0.89137 0.88923 0.89311 0.76264 0.88751 0.90807 0.76714 0.86406 0.84045 0.91085 0.83145 0.90314 0.88261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.91 10.32 36.01 0.37 -0.54 16 2 C 0.51 4.68 7.94 -10.99 -0.09 4.59 16 3 O -0.55 -7.53 16.69 5.55 0.09 -7.44 16 4 N -0.71 -5.22 5.27 -53.02 -0.28 -5.50 16 5 C 0.12 0.99 4.32 -67.12 -0.29 0.70 16 6 H 0.11 1.02 7.46 -51.93 -0.39 0.63 16 7 C -0.17 -1.61 7.68 -25.92 -0.20 -1.81 16 8 C 0.14 1.38 3.90 -67.12 -0.26 1.12 16 9 H 0.10 0.98 6.11 -51.93 -0.32 0.66 16 10 N -0.73 -9.23 5.53 -53.10 -0.29 -9.52 16 11 C 0.32 5.38 7.65 -154.91 -1.19 4.20 16 12 C -0.19 -3.22 9.28 -39.25 -0.36 -3.59 16 13 C -0.14 -2.90 9.25 -39.14 -0.36 -3.26 16 14 C 0.07 1.55 6.66 -38.97 -0.26 1.29 16 15 O -0.22 -5.56 8.59 -0.10 0.00 -5.56 16 16 C -0.39 -10.68 9.96 30.88 0.31 -10.37 16 17 H 0.10 2.83 5.49 -52.49 -0.29 2.55 16 18 C 0.06 1.73 5.49 -17.52 -0.10 1.63 16 19 N -0.88 -25.10 13.96 55.48 0.77 -24.32 16 20 Si 0.91 21.34 28.62 -169.99 -4.86 16.48 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.26 -6.08 7.11 56.52 0.40 -5.68 16 24 C 0.07 1.39 11.14 -17.35 -0.19 1.19 16 25 N -0.50 -9.52 10.39 -12.25 -0.13 -9.64 16 26 C -0.15 -1.10 7.58 -25.92 -0.20 -1.30 16 27 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.09 0.52 8.12 -51.93 -0.42 0.10 16 29 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.40 1.95 8.70 -40.82 -0.36 1.60 16 31 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.40 4.67 8.85 -40.82 -0.36 4.31 16 34 H 0.12 1.67 6.03 -52.49 -0.32 1.36 16 35 H 0.14 2.99 5.76 -52.49 -0.30 2.69 16 36 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.15 2.75 8.06 -52.49 -0.42 2.33 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 0.66 8.12 -51.93 -0.42 0.24 16 LS Contribution 333.25 15.07 5.02 5.02 Total: -1.00 -32.77 333.25 -7.33 -40.10 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -4.84 Total: 6.53 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -2.82 Total: -6.15 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: 0.07 Total: -48.99 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.09 Total: -12.99 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.86 Total: 16.48 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.77 -7.33 -40.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170585971.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.024 kcal (2) G-P(sol) polarization free energy of solvation -32.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds