Wall clock time and date at job start Tue Mar 31 2020 06:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21285 * 120.00213 * 2 1 4 4 N 1.34778 * 120.00085 * 179.97438 * 2 1 3 5 5 C 1.46500 * 120.00249 * 180.02562 * 4 2 1 6 6 H 1.09004 * 112.84628 * 336.19559 * 5 4 2 7 7 C 1.53777 * 113.69542 * 107.46102 * 5 4 2 8 8 C 1.53780 * 87.08115 * 89.12709 * 7 5 4 9 9 H 1.08997 * 113.61803 * 270.88801 * 8 7 5 10 10 N 1.46501 * 113.61509 * 139.98271 * 8 7 5 11 11 C 1.39125 * 119.99801 * 107.50374 * 10 8 7 12 12 C 1.39165 * 119.63367 * 359.72662 * 11 10 8 13 13 C 1.38204 * 119.17033 * 179.74509 * 12 11 10 14 14 C 1.39446 * 118.45123 * 0.52208 * 13 12 11 15 15 O 1.35813 * 120.40771 * 179.76968 * 14 13 12 16 16 C 1.34812 * 116.99956 * 354.49352 * 15 14 13 17 17 H 1.07998 * 119.99843 * 5.05824 * 16 15 14 18 18 C 1.38630 * 120.00027 * 185.05617 * 16 15 14 19 19 N 1.31577 * 119.99723 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99962 * 0.02562 * 18 16 15 21 21 H 1.48489 * 109.47631 * 89.99735 * 20 18 16 22 22 H 1.48502 * 109.46887 * 209.99720 * 20 18 16 23 23 H 1.48499 * 109.47259 * 329.98914 * 20 18 16 24 24 C 1.38670 * 119.19188 * 359.74447 * 14 13 12 25 25 N 1.31937 * 120.75329 * 359.97438 * 24 14 13 26 26 C 1.53775 * 113.61724 * 205.00121 * 5 4 2 27 27 H 1.08999 * 109.47221 * 240.00409 * 1 2 3 28 28 H 1.09001 * 109.46811 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47065 * 119.99888 * 1 2 3 30 30 H 0.97002 * 119.99999 * 359.97438 * 4 2 1 31 31 H 1.08998 * 113.61802 * 203.67843 * 7 5 4 32 32 H 1.08999 * 113.61116 * 334.49865 * 7 5 4 33 33 H 0.97001 * 120.00199 * 287.50523 * 10 8 7 34 34 H 1.07999 * 120.41311 * 0.02562 * 12 11 10 35 35 H 1.08002 * 120.77820 * 180.23793 * 13 12 11 36 36 H 0.97006 * 119.99692 * 180.02562 * 19 18 16 37 37 H 1.07997 * 119.62704 * 180.02562 * 24 14 13 38 38 H 1.09000 * 113.61366 * 25.34315 * 26 5 4 39 39 H 1.09000 * 113.61821 * 156.24765 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 1 4.0693 -0.2483 -0.4044 7 6 4.2634 -1.5895 1.3447 8 6 4.2106 -3.0358 0.8248 9 1 3.2750 -3.5472 1.0508 10 7 5.3924 -3.8282 1.1735 11 6 5.3021 -4.8225 2.1424 12 6 4.0867 -5.0541 2.7795 13 6 4.0064 -6.0477 3.7367 14 6 5.1571 -6.7764 4.0359 15 8 5.1244 -7.7587 4.9732 16 6 3.9762 -7.9076 5.6639 17 1 3.1100 -7.3167 5.4053 18 6 3.9074 -8.8193 6.7060 19 7 2.7870 -8.9642 7.3803 20 14 5.4058 -9.8409 7.1536 21 1 6.2129 -9.1177 8.1688 22 1 4.9669 -11.1465 7.7086 23 1 6.2289 -10.0710 5.9391 24 6 6.3351 -6.4863 3.3643 25 7 6.3745 -5.5342 2.4517 26 6 4.2622 -2.4443 -0.5939 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3633 1.0277 0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 1.6959 -2.0073 0.0013 31 1 5.2763 -1.2166 1.4961 32 1 3.6130 -1.4077 2.2003 33 1 6.2379 -3.6597 0.7289 34 1 3.2160 -4.4676 2.5258 35 1 3.0754 -6.2520 4.2445 36 1 2.7390 -9.6019 8.1098 37 1 7.2303 -7.0466 3.5902 38 1 3.6103 -2.9541 -1.3033 39 1 5.2748 -2.3052 -0.9724 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170585971.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:07 Heat of formation + Delta-G solvation = -20.804453 kcal Electronic energy + Delta-G solvation = -22088.334536 eV Core-core repulsion = 18610.736083 eV Total energy + Delta-G solvation = -3477.598453 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.55674 -41.03879 -39.62738 -38.82318 -35.52752 -34.40730 -33.63809 -32.97566 -30.53226 -29.57721 -27.07901 -26.68946 -25.49176 -24.32453 -22.78770 -21.98355 -20.56345 -19.95530 -19.19380 -18.28216 -17.82904 -17.47446 -17.00823 -16.36579 -16.23730 -15.93942 -15.88653 -15.78012 -14.96736 -14.73958 -14.64250 -14.43438 -14.13272 -13.93323 -13.70009 -13.54375 -13.44591 -13.29737 -12.96983 -12.76057 -12.67685 -12.08331 -11.93120 -11.62453 -11.55159 -11.01226 -10.97300 -10.62229 -10.43366 -10.36509 -10.06878 -8.46077 -8.29523 -6.14793 0.34109 0.67497 1.35804 1.39277 1.56039 1.62955 2.23965 2.30594 2.32040 2.83153 3.09435 3.20401 3.46548 3.60543 3.75618 3.92109 3.97116 4.03196 4.07223 4.20934 4.34449 4.52055 4.59676 4.69310 4.76452 4.81363 4.85318 4.90078 5.01497 5.03203 5.08390 5.18314 5.39590 5.41060 5.59665 5.68050 6.01812 6.26243 6.57090 6.75415 6.88901 7.27176 7.30145 7.63840 8.65540 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.025115 B = 0.002910 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.595769 B = 9618.192806 C =10523.314326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.507 3.493 3 O -0.601 6.601 4 N -0.704 5.704 5 C 0.121 3.879 6 H 0.092 0.908 7 C -0.168 4.168 8 C 0.134 3.866 9 H 0.112 0.888 10 N -0.710 5.710 11 C 0.336 3.664 12 C -0.185 4.185 13 C -0.143 4.143 14 C 0.027 3.973 15 O -0.242 6.242 16 C -0.394 4.394 17 H 0.082 0.918 18 C 0.010 3.990 19 N -0.925 5.925 20 Si 0.968 3.032 21 H -0.268 1.268 22 H -0.271 1.271 23 H -0.260 1.260 24 C 0.078 3.922 25 N -0.515 5.515 26 C -0.132 4.132 27 H 0.107 0.893 28 H 0.086 0.914 29 H 0.114 0.886 30 H 0.418 0.582 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.406 0.594 34 H 0.153 0.847 35 H 0.128 0.872 36 H 0.283 0.717 37 H 0.165 0.835 38 H 0.097 0.903 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.026 13.497 -17.414 22.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.296 3.704 3 O -0.482 6.482 4 N -0.356 5.356 5 C 0.014 3.986 6 H 0.110 0.890 7 C -0.209 4.209 8 C 0.028 3.972 9 H 0.130 0.870 10 N -0.346 5.346 11 C 0.100 3.900 12 C -0.209 4.209 13 C -0.170 4.170 14 C -0.025 4.025 15 O -0.149 6.149 16 C -0.471 4.471 17 H 0.099 0.901 18 C -0.189 4.189 19 N -0.567 5.567 20 Si 0.790 3.210 21 H -0.193 1.193 22 H -0.196 1.196 23 H -0.184 1.184 24 C -0.080 4.080 25 N -0.232 5.232 26 C -0.170 4.170 27 H 0.126 0.874 28 H 0.105 0.895 29 H 0.132 0.868 30 H 0.255 0.745 31 H 0.110 0.890 32 H 0.081 0.919 33 H 0.243 0.757 34 H 0.171 0.829 35 H 0.146 0.854 36 H 0.093 0.907 37 H 0.182 0.818 38 H 0.115 0.885 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.950 14.178 -17.613 22.630 hybrid contribution -0.515 -0.895 1.069 1.486 sum -1.465 13.283 -16.544 21.267 Atomic orbital electron populations 1.21945 0.88333 1.06001 1.06484 1.21583 0.92216 0.82843 0.73765 1.90709 1.72197 1.33346 1.51975 1.45722 1.06143 1.09332 1.74398 1.21575 0.80709 0.99490 0.96777 0.88964 1.24047 1.01988 0.97021 0.97869 1.22650 0.89233 0.89321 0.95967 0.87029 1.44165 1.13005 1.36116 1.41345 1.18392 0.89247 0.90727 0.91587 1.21399 0.98582 1.01231 0.99651 1.21596 0.98666 0.97274 0.99444 1.20368 0.96026 0.92152 0.93996 1.83525 1.37236 1.47620 1.46501 1.20660 0.88622 1.24261 1.13545 0.90051 1.25210 1.00682 0.98286 0.94679 1.69736 1.27425 1.37298 1.22213 0.85248 0.78665 0.77913 0.79147 1.19345 1.19553 1.18408 1.21698 0.95726 0.96404 0.94142 1.67098 1.30063 1.08496 1.17585 1.23652 1.03383 0.94124 0.95883 0.87402 0.89524 0.86766 0.74494 0.89028 0.91928 0.75714 0.82946 0.85449 0.90723 0.81756 0.88460 0.87129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 10.32 71.24 0.74 -0.60 16 2 C 0.51 8.38 7.94 87.66 0.70 9.08 16 3 O -0.60 -16.35 16.69 -3.05 -0.05 -16.41 16 4 N -0.70 -8.41 5.27 -440.04 -2.32 -10.73 16 5 C 0.12 1.71 4.32 45.51 0.20 1.91 16 6 H 0.09 1.64 7.46 -2.39 -0.02 1.62 16 7 C -0.17 -2.81 7.68 31.12 0.24 -2.57 16 8 C 0.13 2.09 3.90 45.52 0.18 2.27 16 9 H 0.11 1.62 6.11 -2.39 -0.01 1.60 16 10 N -0.71 -15.53 5.53 -321.92 -1.78 -17.32 16 11 C 0.34 10.50 7.65 133.03 1.02 11.52 16 12 C -0.18 -5.99 9.28 22.48 0.21 -5.78 16 13 C -0.14 -5.89 9.25 22.55 0.21 -5.68 16 14 C 0.03 1.20 6.66 22.66 0.15 1.35 16 15 O -0.24 -12.70 8.59 -23.26 -0.20 -12.90 16 16 C -0.39 -22.47 9.96 67.91 0.68 -21.80 16 17 H 0.08 4.79 5.49 -2.91 -0.02 4.78 16 18 C 0.01 0.54 5.49 84.82 0.47 1.00 16 19 N -0.93 -54.27 13.96 21.61 0.30 -53.97 16 20 Si 0.97 44.66 28.62 68.60 1.96 46.62 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 23 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 24 C 0.08 3.06 11.14 84.78 0.94 4.00 16 25 N -0.51 -18.39 10.39 -192.67 -2.00 -20.39 16 26 C -0.13 -1.38 7.58 31.12 0.24 -1.14 16 27 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.09 0.83 8.12 -2.39 -0.02 0.81 16 29 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.42 2.52 8.70 -92.71 -0.81 1.72 16 31 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.41 8.00 8.85 -92.71 -0.82 7.18 16 34 H 0.15 3.81 6.03 -2.91 -0.02 3.80 16 35 H 0.13 5.59 5.76 -2.91 -0.02 5.57 16 36 H 0.28 15.30 8.31 -92.70 -0.77 14.53 16 37 H 0.17 5.86 8.06 -2.91 -0.02 5.84 16 38 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.11 1.00 8.12 -2.39 -0.02 0.98 16 Total: -1.00 -73.67 333.25 1.35 -72.32 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -0.52 Total: 19.21 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 5.95 Total: -6.44 kcal Atomic # 7 Polarization: -96.61 SS G_CDS: -5.80 Total: -102.41 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.25 Total: -29.30 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.96 Total: 46.62 kcal Total: -73.67 1.35 -72.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170585971.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.513 kcal (2) G-P(sol) polarization free energy of solvation -73.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds