Wall clock time and date at job start Tue Mar 31 2020 07:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00086 * 2 1 4 4 H 1.48495 * 109.47241 * 269.99617 * 3 2 1 5 5 H 1.48499 * 109.47578 * 30.00133 * 3 2 1 6 6 H 1.48504 * 109.47258 * 150.00029 * 3 2 1 7 7 C 1.37881 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99852 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99871 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47061 * 299.99799 * 9 7 2 11 11 C 1.53002 * 109.46724 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47388 * 60.00078 * 11 10 9 13 13 N 1.46502 * 109.46993 * 179.97438 * 12 11 10 14 14 C 1.30171 * 119.99864 * 249.83648 * 13 12 11 15 15 N 1.37786 * 119.99990 * 193.21446 * 14 13 12 16 16 C 1.48198 * 119.99808 * 13.22176 * 14 13 12 17 17 C 1.39337 * 119.69285 * 197.39803 * 16 14 13 18 18 C 1.38432 * 119.10198 * 179.79470 * 17 16 14 19 19 C 1.38929 * 118.47214 * 0.46663 * 18 17 16 20 20 F 1.35100 * 120.35290 * 179.77054 * 19 18 17 21 21 C 1.38732 * 119.29788 * 359.75806 * 19 18 17 22 22 N 1.31561 * 120.85497 * 0.02562 * 21 19 18 23 23 C 1.53006 * 109.47124 * 299.99677 * 12 11 10 24 24 C 1.52999 * 109.46797 * 60.00291 * 23 12 11 25 25 H 0.97010 * 119.99662 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47054 * 60.00034 * 9 7 2 27 27 H 1.08997 * 109.46879 * 300.00152 * 10 9 7 28 28 H 1.08994 * 109.47027 * 60.00527 * 10 9 7 29 29 H 1.08999 * 109.46982 * 299.99985 * 11 10 9 30 30 H 1.09001 * 109.46902 * 180.02562 * 11 10 9 31 31 H 1.08999 * 109.47135 * 60.00001 * 12 11 10 32 32 H 0.97001 * 120.00416 * 0.02562 * 15 14 13 33 33 H 0.97005 * 119.99769 * 179.97438 * 15 14 13 34 34 H 1.08003 * 120.45219 * 359.97438 * 17 16 14 35 35 H 1.07992 * 120.76752 * 180.22561 * 18 17 16 36 36 H 1.08005 * 119.56910 * 179.97438 * 21 19 18 37 37 H 1.08997 * 109.46879 * 300.00059 * 23 12 11 38 38 H 1.08997 * 109.47101 * 180.02562 * 23 12 11 39 39 H 1.09001 * 109.47142 * 179.97438 * 24 23 12 40 40 H 1.08999 * 109.47251 * 59.99806 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 0.3708 -2.5799 1.2495 11 6 -0.3937 -3.9051 1.2498 12 6 0.6008 -5.0677 1.2507 13 7 -0.1313 -6.3367 1.2515 14 6 -0.1201 -7.0939 2.3103 15 7 -0.5685 -8.3943 2.2320 16 6 0.3748 -6.5570 3.5999 17 6 0.7288 -7.4347 4.6226 18 6 1.1937 -6.9201 5.8207 19 6 1.2801 -5.5405 5.9599 20 9 1.7243 -4.9973 7.1143 21 6 0.9056 -4.7265 4.9006 22 7 0.4714 -5.2448 3.7721 23 6 1.4809 -4.9870 0.0017 24 6 2.2455 -3.6618 0.0015 25 1 -0.4850 0.8402 -0.0004 26 1 0.6246 -2.5570 -0.8897 27 1 0.9972 -2.5219 2.1397 28 1 -0.3375 -1.7514 1.2490 29 1 -1.0200 -3.9634 0.3596 30 1 -1.0211 -3.9625 2.1393 31 1 1.2271 -5.0094 2.1409 32 1 -0.8922 -8.7458 1.3879 33 1 -0.5598 -8.9587 3.0210 34 1 0.6444 -8.5021 4.4815 35 1 1.4790 -7.5758 6.6299 36 1 0.9706 -3.6534 5.0042 37 1 0.8546 -5.0453 -0.8884 38 1 2.1892 -5.8155 0.0021 39 1 2.8729 -3.6044 -0.8881 40 1 2.8718 -3.6035 0.8917 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329516.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:44 Heat of formation + Delta-G solvation = 12.304567 kcal Electronic energy + Delta-G solvation = -23326.759812 eV Core-core repulsion = 19862.969863 eV Total energy + Delta-G solvation = -3463.789948 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.20562 -40.60422 -37.77438 -36.31296 -33.55890 -32.61458 -31.49227 -30.72037 -29.46870 -28.29476 -24.80639 -24.20387 -23.77794 -21.33293 -21.23285 -19.78697 -18.68068 -17.87940 -17.50298 -17.27715 -16.18130 -16.09297 -15.97089 -15.14639 -14.57437 -14.24248 -14.16789 -14.03281 -13.87337 -13.20657 -13.08127 -12.73227 -12.60652 -12.35845 -11.97106 -11.41269 -11.08541 -10.96706 -10.64027 -10.56525 -10.38652 -10.14540 -10.08312 -9.90597 -9.71368 -9.21697 -9.17272 -8.80653 -8.53792 -8.39128 -8.17631 -7.81907 -5.85186 -3.91041 0.39733 0.81975 2.62499 3.34333 3.37168 3.43681 3.46967 3.57863 3.74272 4.17338 4.29953 4.48532 4.53421 4.55379 5.02222 5.31403 5.43306 5.48675 5.50010 5.64511 5.87988 5.98550 6.22987 6.35278 6.47338 6.64633 6.65962 6.72586 6.92711 6.95941 7.01400 7.14003 7.29143 7.33785 7.47497 7.56135 7.65698 7.74234 7.89655 8.20375 8.33222 8.53913 8.62577 9.13472 9.72549 11.20023 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016692 B = 0.004678 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.058054 B = 5983.443517 C = 7156.196249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.886 3.114 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.510 4.510 8 H 0.052 0.948 9 C 0.048 3.952 10 C -0.101 4.101 11 C -0.092 4.092 12 C 0.095 3.905 13 N -0.556 5.556 14 C 0.417 3.583 15 N -0.849 5.849 16 C 0.107 3.893 17 C -0.126 4.126 18 C -0.113 4.113 19 C 0.055 3.945 20 F -0.128 7.128 21 C 0.082 3.918 22 N -0.408 5.408 23 C -0.102 4.102 24 C -0.105 4.105 25 H 0.258 0.742 26 H 0.024 0.976 27 H 0.031 0.969 28 H 0.089 0.911 29 H 0.047 0.953 30 H 0.042 0.958 31 H 0.075 0.925 32 H 0.408 0.592 33 H 0.398 0.602 34 H 0.145 0.855 35 H 0.149 0.851 36 H 0.176 0.824 37 H 0.058 0.942 38 H 0.036 0.964 39 H 0.046 0.954 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.008 -17.960 12.032 21.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.714 3.286 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.548 4.548 8 H 0.070 0.930 9 C 0.029 3.971 10 C -0.140 4.140 11 C -0.131 4.131 12 C -0.015 4.015 13 N -0.280 5.280 14 C 0.136 3.864 15 N -0.402 5.402 16 C -0.033 4.033 17 C -0.148 4.148 18 C -0.139 4.139 19 C 0.032 3.968 20 F -0.107 7.107 21 C -0.078 4.078 22 N -0.118 5.118 23 C -0.140 4.140 24 C -0.143 4.143 25 H 0.068 0.932 26 H 0.042 0.958 27 H 0.050 0.950 28 H 0.107 0.893 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.239 0.761 33 H 0.226 0.774 34 H 0.162 0.838 35 H 0.167 0.833 36 H 0.193 0.807 37 H 0.077 0.923 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.643 -17.025 10.483 20.004 hybrid contribution 0.983 0.355 1.740 2.029 sum 0.340 -16.670 12.223 20.674 Atomic orbital electron populations 1.69898 1.05787 1.26048 1.51175 1.24956 0.94784 0.98804 0.95431 0.86693 0.79907 0.83975 0.77978 1.20846 1.21370 1.20071 1.21256 0.92776 0.90904 1.49891 0.92982 1.18667 0.92632 0.91237 0.94533 1.21526 0.99356 0.94772 0.98305 1.21507 0.97008 0.94862 0.99678 1.21916 0.94646 0.86893 0.98022 1.71722 1.19376 1.10612 1.26302 1.19530 0.92553 0.86877 0.87470 1.41785 1.74280 1.09053 1.15081 1.20995 0.98248 0.89558 0.94519 1.22036 0.98832 1.01355 0.92596 1.21567 0.99618 0.93585 0.99168 1.19025 1.00957 0.92654 0.84142 1.91537 1.86632 1.86154 1.46368 1.23232 0.95955 1.01669 0.86933 1.68208 1.10605 1.12471 1.20478 1.21561 0.97383 0.97457 0.97589 1.21596 0.98530 0.94437 0.99713 0.93231 0.95785 0.95024 0.89304 0.93431 0.93906 0.90779 0.76115 0.77351 0.83755 0.83306 0.80706 0.92334 0.94487 0.93539 0.93849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 11.32 55.43 0.63 -25.49 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.51 -14.44 8.56 -34.44 -0.29 -14.74 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.05 1.24 2.10 -91.77 -0.19 1.05 16 10 C -0.10 -2.50 4.98 -26.73 -0.13 -2.63 16 11 C -0.09 -2.01 5.23 -26.73 -0.14 -2.15 16 12 C 0.09 1.86 2.02 -67.93 -0.14 1.72 16 13 N -0.56 -9.75 10.21 -51.98 -0.53 -10.28 16 14 C 0.42 5.74 7.87 -154.31 -1.21 4.52 16 15 N -0.85 -7.56 8.96 32.50 0.29 -7.26 16 16 C 0.11 1.38 6.24 -82.99 -0.52 0.87 16 17 C -0.13 -1.12 9.48 -39.10 -0.37 -1.49 16 18 C -0.11 -0.97 10.15 -39.25 -0.40 -1.37 16 19 C 0.05 0.60 7.35 -39.14 -0.29 0.31 16 20 F -0.13 -1.43 17.28 2.25 0.04 -1.39 16 21 C 0.08 1.06 11.17 -17.48 -0.20 0.87 16 22 N -0.41 -6.17 5.87 -9.74 -0.06 -6.23 16 23 C -0.10 -2.05 5.53 -26.73 -0.15 -2.20 16 24 C -0.10 -2.34 5.14 -26.73 -0.14 -2.48 16 25 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.04 0.91 7.60 -51.93 -0.39 0.51 16 31 H 0.08 1.46 4.81 -51.97 -0.25 1.21 16 32 H 0.41 3.37 8.95 -40.82 -0.37 3.01 16 33 H 0.40 2.15 7.21 -40.82 -0.29 1.86 16 34 H 0.14 0.75 6.75 -52.48 -0.35 0.40 16 35 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.18 2.11 8.06 -52.48 -0.42 1.69 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 326.17 15.07 4.92 4.92 Total: -1.00 -32.49 326.17 -9.32 -41.81 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -5.32 Total: 3.27 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -4.26 Total: -16.10 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.33 Total: -49.26 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.49 -9.32 -41.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329516.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.117 kcal (2) G-P(sol) polarization free energy of solvation -32.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds