Wall clock time and date at job start Tue Mar 31 2020 07:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00086 * 2 1 4 4 H 1.48495 * 109.47241 * 269.99617 * 3 2 1 5 5 H 1.48499 * 109.47578 * 30.00133 * 3 2 1 6 6 H 1.48504 * 109.47258 * 150.00029 * 3 2 1 7 7 C 1.37881 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99852 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99871 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47061 * 299.99799 * 9 7 2 11 11 C 1.53002 * 109.46724 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47388 * 60.00078 * 11 10 9 13 13 N 1.46502 * 109.46993 * 179.97438 * 12 11 10 14 14 C 1.30171 * 119.99864 * 249.83648 * 13 12 11 15 15 N 1.37786 * 119.99990 * 193.21446 * 14 13 12 16 16 C 1.48198 * 119.99808 * 13.22176 * 14 13 12 17 17 C 1.39337 * 119.69285 * 197.39803 * 16 14 13 18 18 C 1.38432 * 119.10198 * 179.79470 * 17 16 14 19 19 C 1.38929 * 118.47214 * 0.46663 * 18 17 16 20 20 F 1.35100 * 120.35290 * 179.77054 * 19 18 17 21 21 C 1.38732 * 119.29788 * 359.75806 * 19 18 17 22 22 N 1.31561 * 120.85497 * 0.02562 * 21 19 18 23 23 C 1.53006 * 109.47124 * 299.99677 * 12 11 10 24 24 C 1.52999 * 109.46797 * 60.00291 * 23 12 11 25 25 H 0.97010 * 119.99662 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47054 * 60.00034 * 9 7 2 27 27 H 1.08997 * 109.46879 * 300.00152 * 10 9 7 28 28 H 1.08994 * 109.47027 * 60.00527 * 10 9 7 29 29 H 1.08999 * 109.46982 * 299.99985 * 11 10 9 30 30 H 1.09001 * 109.46902 * 180.02562 * 11 10 9 31 31 H 1.08999 * 109.47135 * 60.00001 * 12 11 10 32 32 H 0.97001 * 120.00416 * 0.02562 * 15 14 13 33 33 H 0.97005 * 119.99769 * 179.97438 * 15 14 13 34 34 H 1.08003 * 120.45219 * 359.97438 * 17 16 14 35 35 H 1.07992 * 120.76752 * 180.22561 * 18 17 16 36 36 H 1.08005 * 119.56910 * 179.97438 * 21 19 18 37 37 H 1.08997 * 109.46879 * 300.00059 * 23 12 11 38 38 H 1.08997 * 109.47101 * 180.02562 * 23 12 11 39 39 H 1.09001 * 109.47142 * 179.97438 * 24 23 12 40 40 H 1.08999 * 109.47251 * 59.99806 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 0.3708 -2.5799 1.2495 11 6 -0.3937 -3.9051 1.2498 12 6 0.6008 -5.0677 1.2507 13 7 -0.1313 -6.3367 1.2515 14 6 -0.1201 -7.0939 2.3103 15 7 -0.5685 -8.3943 2.2320 16 6 0.3748 -6.5570 3.5999 17 6 0.7288 -7.4347 4.6226 18 6 1.1937 -6.9201 5.8207 19 6 1.2801 -5.5405 5.9599 20 9 1.7243 -4.9973 7.1143 21 6 0.9056 -4.7265 4.9006 22 7 0.4714 -5.2448 3.7721 23 6 1.4809 -4.9870 0.0017 24 6 2.2455 -3.6618 0.0015 25 1 -0.4850 0.8402 -0.0004 26 1 0.6246 -2.5570 -0.8897 27 1 0.9972 -2.5219 2.1397 28 1 -0.3375 -1.7514 1.2490 29 1 -1.0200 -3.9634 0.3596 30 1 -1.0211 -3.9625 2.1393 31 1 1.2271 -5.0094 2.1409 32 1 -0.8922 -8.7458 1.3879 33 1 -0.5598 -8.9587 3.0210 34 1 0.6444 -8.5021 4.4815 35 1 1.4790 -7.5758 6.6299 36 1 0.9706 -3.6534 5.0042 37 1 0.8546 -5.0453 -0.8884 38 1 2.1892 -5.8155 0.0021 39 1 2.8729 -3.6044 -0.8881 40 1 2.8718 -3.6035 0.8917 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173329516.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:43 Heat of formation + Delta-G solvation = -8.772942 kcal Electronic energy + Delta-G solvation = -23327.673801 eV Core-core repulsion = 19862.969863 eV Total energy + Delta-G solvation = -3464.703938 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -50.06952 -41.54738 -39.33680 -37.54204 -35.11802 -33.89483 -32.85466 -31.66771 -31.30051 -29.99668 -26.54240 -25.31499 -24.71743 -23.14048 -22.80010 -20.95490 -20.45779 -18.79152 -18.44558 -18.36344 -18.26123 -16.99436 -16.82470 -16.61024 -16.16850 -15.66934 -15.15472 -15.02179 -14.85524 -14.81371 -14.52641 -14.23522 -14.03689 -13.71844 -13.58763 -13.04983 -12.91537 -12.73452 -12.54155 -12.27837 -12.18200 -11.83079 -11.67002 -11.24492 -11.06299 -10.94281 -10.71169 -10.52373 -10.33985 -10.05273 -9.58848 -9.00745 -8.03518 -6.18631 -0.48621 0.03537 1.41404 1.41784 1.52502 1.60284 2.43314 2.45448 2.64802 2.90658 3.20254 3.23696 3.52370 3.71299 3.76340 4.07743 4.13293 4.28120 4.45684 4.58794 4.65741 4.71234 4.74061 4.82082 4.87918 4.92823 4.99459 5.09344 5.19730 5.30827 5.41851 5.46291 5.51282 5.56131 5.67341 5.77131 6.07077 6.23657 6.43859 6.44390 6.59851 6.77328 6.94009 7.48874 7.53923 9.00382 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016692 B = 0.004678 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.058054 B = 5983.443517 C = 7156.196249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.533 4.533 8 H 0.051 0.949 9 C 0.046 3.954 10 C -0.087 4.087 11 C -0.077 4.077 12 C 0.110 3.890 13 N -0.608 5.608 14 C 0.435 3.565 15 N -0.822 5.822 16 C 0.075 3.925 17 C -0.100 4.100 18 C -0.098 4.098 19 C 0.058 3.942 20 F -0.130 7.130 21 C 0.058 3.942 22 N -0.450 5.450 23 C -0.095 4.095 24 C -0.096 4.096 25 H 0.259 0.741 26 H -0.014 1.014 27 H 0.027 0.973 28 H 0.053 0.947 29 H 0.023 0.977 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.414 0.586 33 H 0.418 0.582 34 H 0.191 0.809 35 H 0.191 0.809 36 H 0.166 0.834 37 H 0.044 0.956 38 H 0.058 0.942 39 H 0.047 0.953 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.062 -20.750 14.040 25.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.187 4.187 3 Si 0.780 3.220 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.571 4.571 8 H 0.070 0.930 9 C 0.027 3.973 10 C -0.126 4.126 11 C -0.115 4.115 12 C 0.000 4.000 13 N -0.335 5.335 14 C 0.154 3.846 15 N -0.376 5.376 16 C -0.064 4.064 17 C -0.121 4.121 18 C -0.124 4.124 19 C 0.035 3.965 20 F -0.109 7.109 21 C -0.102 4.102 22 N -0.160 5.160 23 C -0.133 4.133 24 C -0.134 4.134 25 H 0.068 0.932 26 H 0.004 0.996 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.042 0.958 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.246 0.754 33 H 0.251 0.749 34 H 0.208 0.792 35 H 0.208 0.792 36 H 0.183 0.817 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.405 -19.878 12.523 23.498 hybrid contribution 0.614 1.094 1.253 1.773 sum 1.019 -18.785 13.776 23.317 Atomic orbital electron populations 1.70062 1.07283 1.26909 1.51542 1.25772 0.95636 1.02400 0.94902 0.85622 0.78776 0.79441 0.78210 1.20178 1.20859 1.19172 1.21607 0.92952 0.92258 1.50312 0.93037 1.18626 0.93013 0.92349 0.93297 1.21269 0.98446 0.95395 0.97481 1.21279 0.97099 0.94822 0.98344 1.21503 0.93856 0.87332 0.97352 1.71663 1.23144 1.10357 1.28369 1.19860 0.90109 0.87534 0.87129 1.41761 1.72065 1.07241 1.16499 1.21075 1.00288 0.89633 0.95429 1.22430 0.95874 1.02889 0.90939 1.22016 0.97701 0.92636 1.00026 1.19099 1.00331 0.93685 0.83349 1.91537 1.86591 1.86451 1.46293 1.23139 0.97534 1.01843 0.87654 1.67970 1.11893 1.14325 1.21808 1.21465 0.97557 0.96542 0.97759 1.21451 0.97791 0.94374 0.99791 0.93192 0.99552 0.95372 0.92818 0.95802 0.93897 0.90677 0.75378 0.74868 0.79186 0.79150 0.81677 0.93723 0.92380 0.93416 0.93624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.10 11.32 21.45 0.24 -55.86 16 2 C 0.01 0.64 5.30 84.66 0.45 1.09 16 3 Si 0.95 45.50 29.54 68.60 2.03 47.53 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 7 C -0.53 -31.26 8.56 25.60 0.22 -31.04 16 8 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 9 C 0.05 2.50 2.10 -11.54 -0.02 2.48 16 10 C -0.09 -4.58 4.98 30.60 0.15 -4.43 16 11 C -0.08 -3.55 5.23 30.59 0.16 -3.39 16 12 C 0.11 4.41 2.02 44.99 0.09 4.50 16 13 N -0.61 -21.08 10.21 -318.36 -3.25 -24.33 16 14 C 0.44 11.04 7.87 136.56 1.07 12.12 16 15 N -0.82 -11.61 8.96 -51.10 -0.46 -12.06 16 16 C 0.08 1.78 6.24 41.93 0.26 2.04 16 17 C -0.10 -1.31 9.48 22.58 0.21 -1.10 16 18 C -0.10 -1.24 10.15 22.48 0.23 -1.01 16 19 C 0.06 1.14 7.35 22.55 0.17 1.30 16 20 F -0.13 -2.65 17.28 44.97 0.78 -1.88 16 21 C 0.06 1.50 11.17 84.85 0.95 2.45 16 22 N -0.45 -13.53 5.87 -184.71 -1.08 -14.62 16 23 C -0.09 -3.91 5.53 30.60 0.17 -3.74 16 24 C -0.10 -4.43 5.14 30.60 0.16 -4.27 16 25 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 26 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 27 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.05 3.17 6.07 -2.39 -0.01 3.15 16 29 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.04 1.92 7.60 -2.39 -0.02 1.91 16 31 H 0.08 3.01 4.81 -2.47 -0.01 2.99 16 32 H 0.41 5.49 8.95 -92.71 -0.83 4.67 16 33 H 0.42 2.38 7.21 -92.70 -0.67 1.72 16 34 H 0.19 0.65 6.75 -2.91 -0.02 0.63 16 35 H 0.19 0.89 8.06 -2.91 -0.02 0.86 16 36 H 0.17 4.31 8.06 -2.91 -0.02 4.29 16 37 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -75.25 326.17 2.10 -73.15 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -0.42 Total: 11.05 kcal Atomic # 6 Polarization: -27.25 SS G_CDS: 4.27 Total: -22.99 kcal Atomic # 7 Polarization: -102.32 SS G_CDS: -4.55 Total: -106.87 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.78 Total: -1.88 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -75.25 2.10 -73.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329516.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.376 kcal (2) G-P(sol) polarization free energy of solvation -75.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds