Wall clock time and date at job start Tue Mar 31 2020 07:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00357 * 2 1 4 4 H 1.48512 * 109.47218 * 269.99940 * 3 2 1 5 5 H 1.48503 * 109.47227 * 29.99739 * 3 2 1 6 6 H 1.48497 * 109.47394 * 150.00332 * 3 2 1 7 7 C 1.37882 * 119.99701 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99878 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99932 * 180.27308 * 7 2 1 10 10 C 1.52997 * 109.47104 * 299.72553 * 9 7 2 11 11 C 1.53000 * 109.46877 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.47072 * 60.00268 * 11 10 9 13 13 N 1.46896 * 109.47072 * 180.02562 * 12 11 10 14 14 C 1.46903 * 110.99734 * 273.17753 * 13 12 11 15 15 H 1.09000 * 110.29061 * 32.68206 * 14 13 12 16 16 C 1.54141 * 110.32492 * 270.44351 * 14 13 12 17 17 C 1.54211 * 101.73222 * 267.68035 * 16 14 13 18 18 C 1.52110 * 104.84286 * 333.53268 * 17 16 14 19 19 S 1.76541 * 139.39629 * 197.43460 * 18 17 16 20 20 C 1.75578 * 91.07942 * 179.97438 * 19 18 17 21 21 C 1.32630 * 109.65584 * 0.02619 * 20 19 18 22 22 C 1.33823 * 110.68001 * 17.40302 * 18 17 16 23 23 C 1.52998 * 109.46760 * 299.99872 * 12 11 10 24 24 C 1.53000 * 109.46888 * 179.72628 * 9 7 2 25 25 H 0.96996 * 119.99516 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46739 * 59.72632 * 9 7 2 27 27 H 1.09000 * 109.47387 * 299.99682 * 10 9 7 28 28 H 1.09006 * 109.47349 * 60.00193 * 10 9 7 29 29 H 1.09001 * 109.47541 * 300.00330 * 11 10 9 30 30 H 1.09001 * 109.47010 * 180.02562 * 11 10 9 31 31 H 1.09001 * 109.46887 * 59.99662 * 12 11 10 32 32 H 1.00900 * 111.00482 * 37.12358 * 13 12 11 33 33 H 1.09007 * 110.97622 * 25.79673 * 16 14 13 34 34 H 1.08999 * 110.98237 * 149.58204 * 16 14 13 35 35 H 1.08995 * 110.37973 * 214.68060 * 17 16 14 36 36 H 1.09007 * 110.34516 * 92.36303 * 17 16 14 37 37 H 1.08001 * 125.17260 * 180.02562 * 20 19 18 38 38 H 1.07995 * 122.18850 * 180.02562 * 21 20 19 39 39 H 1.09001 * 109.47248 * 299.99568 * 23 12 11 40 40 H 1.08998 * 109.46890 * 180.02562 * 23 12 11 41 41 H 1.09004 * 109.46950 * 299.99551 * 24 9 7 42 42 H 1.08992 * 109.47588 * 60.00139 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0068 10 6 4.0267 -0.4765 -1.2424 11 6 5.5567 -0.4761 -1.2357 12 6 6.0671 -1.9185 -1.2292 13 7 7.5360 -1.9180 -1.2222 14 6 8.0690 -1.8457 -2.5892 15 1 7.4039 -1.2598 -3.2237 16 6 8.2536 -3.2625 -3.1676 17 6 9.7179 -3.5664 -2.7914 18 6 10.3860 -2.2034 -2.6937 19 16 12.0063 -1.5026 -2.6834 20 6 11.3418 0.1146 -2.5226 21 6 10.0176 0.0513 -2.4862 22 6 9.4695 -1.2348 -2.5813 23 6 5.5518 -2.6361 0.0199 24 6 4.0214 -2.6367 0.0130 25 1 -0.4849 0.8400 -0.0004 26 1 3.8711 -0.6778 0.8968 27 1 3.6671 -0.9929 -2.1324 28 1 3.6635 0.5512 -1.2468 29 1 5.9161 0.0405 -0.3457 30 1 5.9237 0.0356 -2.1254 31 1 5.7077 -2.4350 -2.1192 32 1 7.8948 -1.1653 -0.6541 33 1 7.5737 -3.9697 -2.6922 34 1 8.1208 -3.2628 -4.2494 35 1 10.1924 -4.1667 -3.5676 36 1 9.7637 -4.0810 -1.8315 37 1 11.9231 1.0229 -2.4624 38 1 9.4018 0.9333 -2.3909 39 1 5.9112 -2.1195 0.9100 40 1 5.9158 -3.6635 0.0248 41 1 3.6544 -3.1480 0.9030 42 1 3.6618 -3.1531 -0.8770 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173334785.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:45 Heat of formation + Delta-G solvation = 26.870083 kcal Electronic energy + Delta-G solvation = -21186.500482 eV Core-core repulsion = 18257.262567 eV Total energy + Delta-G solvation = -2929.237915 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.95912 -38.10384 -35.22298 -33.64935 -32.01140 -30.11795 -29.12211 -27.94820 -26.36433 -23.89899 -22.66903 -22.02771 -21.18863 -20.22115 -19.24650 -18.31147 -17.34991 -16.61114 -16.15105 -15.61020 -14.87883 -14.30816 -14.17150 -13.89377 -13.51974 -13.20534 -13.04479 -12.82366 -12.69626 -12.51356 -12.19596 -11.89955 -11.71431 -11.67451 -11.43036 -11.27135 -11.14711 -10.91678 -10.75407 -10.56221 -10.37863 -10.03220 -9.81421 -9.53942 -9.15269 -8.89935 -8.73158 -8.58803 -8.50438 -8.08962 -6.04818 -4.02953 0.86830 1.32730 1.84081 2.48754 3.27140 3.38175 3.40651 4.19984 4.38276 4.42885 4.49297 4.84489 5.03542 5.16356 5.21302 5.27204 5.30031 5.39408 5.45449 5.63703 5.65104 5.71323 5.86485 5.91377 5.95450 5.97654 6.08251 6.18068 6.20416 6.24246 6.25597 6.33922 6.43412 6.55270 6.65630 6.77082 6.93865 7.04016 7.23032 7.35347 7.50791 7.61514 7.82483 8.56755 9.00469 9.58668 11.08801 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.029070 B = 0.003629 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.976216 B = 7712.822953 C = 8364.414691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.266 1.266 7 C -0.511 4.511 8 H 0.073 0.927 9 C 0.014 3.986 10 C -0.115 4.115 11 C -0.147 4.147 12 C 0.091 3.909 13 N -0.674 5.674 14 C 0.148 3.852 15 H 0.055 0.945 16 C -0.108 4.108 17 C -0.037 4.037 18 C -0.179 4.179 19 S 0.107 5.893 20 C -0.220 4.220 21 C -0.109 4.109 22 C -0.135 4.135 23 C -0.103 4.103 24 C -0.098 4.098 25 H 0.262 0.738 26 H 0.024 0.976 27 H 0.058 0.942 28 H 0.044 0.956 29 H 0.056 0.944 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.341 0.659 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.165 0.835 38 H 0.135 0.865 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.467 -3.465 -6.611 24.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.227 1.227 6 H -0.191 1.191 7 C -0.549 4.549 8 H 0.091 0.909 9 C -0.005 4.005 10 C -0.153 4.153 11 C -0.187 4.187 12 C -0.018 4.018 13 N -0.304 5.304 14 C 0.037 3.963 15 H 0.073 0.927 16 C -0.147 4.147 17 C -0.077 4.077 18 C -0.297 4.297 19 S 0.372 5.628 20 C -0.354 4.354 21 C -0.140 4.140 22 C -0.147 4.147 23 C -0.141 4.141 24 C -0.137 4.137 25 H 0.072 0.928 26 H 0.043 0.957 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.160 0.840 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.183 0.817 38 H 0.153 0.847 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 24.876 -4.598 -6.662 26.160 hybrid contribution -1.155 2.859 -0.170 3.088 sum 23.721 -1.739 -6.832 24.746 Atomic orbital electron populations 1.69906 1.06291 1.26808 1.51251 1.25041 0.94666 0.99024 0.94639 0.86831 0.79891 0.83679 0.77705 1.20824 1.22685 1.19116 1.21120 0.89098 0.94347 1.50343 0.90917 1.19149 0.96285 0.92114 0.92933 1.21905 0.91683 1.00167 1.01509 1.22300 0.99057 0.96944 1.00355 1.21667 0.85231 0.95320 0.99586 1.60829 1.07937 1.51801 1.09851 1.20919 0.89641 0.94661 0.91115 0.92686 1.22339 0.95716 0.96552 1.00142 1.20785 0.93943 0.90708 1.02249 1.25943 0.95282 1.01419 1.07073 1.83983 1.05988 0.98998 1.73864 1.25245 0.97882 1.00450 1.11859 1.19695 0.94356 0.97344 1.02583 1.20620 0.96886 0.92136 1.05088 1.21539 0.96720 0.99352 0.96469 1.21448 0.92306 0.98861 1.01040 0.92780 0.95750 0.92285 0.93808 0.92555 0.93664 0.90633 0.84026 0.89164 0.90943 0.91128 0.89507 0.81720 0.84693 0.92702 0.92490 0.92612 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 2 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 3 Si 0.89 22.20 24.37 -169.99 -4.14 18.05 16 4 H -0.28 -6.86 6.88 56.52 0.39 -6.47 16 5 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.27 -6.37 6.52 56.52 0.37 -6.00 16 7 C -0.51 -14.30 9.14 -34.44 -0.31 -14.61 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C 0.01 0.32 1.69 -91.77 -0.16 0.17 16 10 C -0.11 -2.41 4.68 -26.73 -0.13 -2.54 16 11 C -0.15 -2.49 5.16 -26.73 -0.14 -2.63 16 12 C 0.09 1.36 2.32 -67.71 -0.16 1.20 16 13 N -0.67 -8.72 6.08 -99.22 -0.60 -9.32 16 14 C 0.15 1.76 2.98 -67.22 -0.20 1.56 16 15 H 0.06 0.70 7.33 -51.93 -0.38 0.32 16 16 C -0.11 -1.10 6.78 -25.50 -0.17 -1.28 16 17 C -0.04 -0.36 6.80 -26.55 -0.18 -0.54 16 18 C -0.18 -1.96 7.35 -35.16 -0.26 -2.21 16 19 S 0.11 1.02 23.35 -107.50 -2.51 -1.49 16 20 C -0.22 -2.09 11.18 28.83 0.32 -1.76 16 21 C -0.11 -1.18 10.17 -40.77 -0.41 -1.59 16 22 C -0.14 -1.57 5.86 -104.42 -0.61 -2.18 16 23 C -0.10 -1.64 5.53 -26.71 -0.15 -1.79 16 24 C -0.10 -1.91 5.15 -26.71 -0.14 -2.04 16 25 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.02 0.59 7.19 -51.93 -0.37 0.21 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.04 1.00 3.29 -51.93 -0.17 0.83 16 29 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 30 H 0.04 0.71 7.63 -51.93 -0.40 0.31 16 31 H 0.08 1.14 7.82 -51.93 -0.41 0.73 16 32 H 0.34 4.48 8.10 -39.29 -0.32 4.16 16 33 H 0.09 0.95 8.09 -51.93 -0.42 0.53 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 333.63 15.07 5.03 5.03 Total: -1.00 -29.74 333.63 -10.96 -40.70 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -6.72 Total: 2.53 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: -2.79 Total: -28.41 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.17 Total: -36.42 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.14 Total: 18.05 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.51 Total: -1.49 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.74 -10.96 -40.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334785.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.570 kcal (2) G-P(sol) polarization free energy of solvation -29.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds