Wall clock time and date at job start Tue Mar 31 2020 07:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00357 * 2 1 4 4 H 1.48512 * 109.47218 * 269.99940 * 3 2 1 5 5 H 1.48503 * 109.47227 * 29.99739 * 3 2 1 6 6 H 1.48497 * 109.47394 * 150.00332 * 3 2 1 7 7 C 1.37882 * 119.99701 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99878 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99932 * 180.27308 * 7 2 1 10 10 C 1.52997 * 109.47104 * 299.72553 * 9 7 2 11 11 C 1.53000 * 109.46877 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.47072 * 60.00268 * 11 10 9 13 13 N 1.46896 * 109.47072 * 180.02562 * 12 11 10 14 14 C 1.46903 * 110.99734 * 273.17753 * 13 12 11 15 15 H 1.09000 * 110.29061 * 32.68206 * 14 13 12 16 16 C 1.54141 * 110.32492 * 270.44351 * 14 13 12 17 17 C 1.54211 * 101.73222 * 267.68035 * 16 14 13 18 18 C 1.52110 * 104.84286 * 333.53268 * 17 16 14 19 19 S 1.76541 * 139.39629 * 197.43460 * 18 17 16 20 20 C 1.75578 * 91.07942 * 179.97438 * 19 18 17 21 21 C 1.32630 * 109.65584 * 0.02619 * 20 19 18 22 22 C 1.33823 * 110.68001 * 17.40302 * 18 17 16 23 23 C 1.52998 * 109.46760 * 299.99872 * 12 11 10 24 24 C 1.53000 * 109.46888 * 179.72628 * 9 7 2 25 25 H 0.96996 * 119.99516 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46739 * 59.72632 * 9 7 2 27 27 H 1.09000 * 109.47387 * 299.99682 * 10 9 7 28 28 H 1.09006 * 109.47349 * 60.00193 * 10 9 7 29 29 H 1.09001 * 109.47541 * 300.00330 * 11 10 9 30 30 H 1.09001 * 109.47010 * 180.02562 * 11 10 9 31 31 H 1.09001 * 109.46887 * 59.99662 * 12 11 10 32 32 H 1.00900 * 111.00482 * 37.12358 * 13 12 11 33 33 H 1.09007 * 110.97622 * 25.79673 * 16 14 13 34 34 H 1.08999 * 110.98237 * 149.58204 * 16 14 13 35 35 H 1.08995 * 110.37973 * 214.68060 * 17 16 14 36 36 H 1.09007 * 110.34516 * 92.36303 * 17 16 14 37 37 H 1.08001 * 125.17260 * 180.02562 * 20 19 18 38 38 H 1.07995 * 122.18850 * 180.02562 * 21 20 19 39 39 H 1.09001 * 109.47248 * 299.99568 * 23 12 11 40 40 H 1.08998 * 109.46890 * 180.02562 * 23 12 11 41 41 H 1.09004 * 109.46950 * 299.99551 * 24 9 7 42 42 H 1.08992 * 109.47588 * 60.00139 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0068 10 6 4.0267 -0.4765 -1.2424 11 6 5.5567 -0.4761 -1.2357 12 6 6.0671 -1.9185 -1.2292 13 7 7.5360 -1.9180 -1.2222 14 6 8.0690 -1.8457 -2.5892 15 1 7.4039 -1.2598 -3.2237 16 6 8.2536 -3.2625 -3.1676 17 6 9.7179 -3.5664 -2.7914 18 6 10.3860 -2.2034 -2.6937 19 16 12.0063 -1.5026 -2.6834 20 6 11.3418 0.1146 -2.5226 21 6 10.0176 0.0513 -2.4862 22 6 9.4695 -1.2348 -2.5813 23 6 5.5518 -2.6361 0.0199 24 6 4.0214 -2.6367 0.0130 25 1 -0.4849 0.8400 -0.0004 26 1 3.8711 -0.6778 0.8968 27 1 3.6671 -0.9929 -2.1324 28 1 3.6635 0.5512 -1.2468 29 1 5.9161 0.0405 -0.3457 30 1 5.9237 0.0356 -2.1254 31 1 5.7077 -2.4350 -2.1192 32 1 7.8948 -1.1653 -0.6541 33 1 7.5737 -3.9697 -2.6922 34 1 8.1208 -3.2628 -4.2494 35 1 10.1924 -4.1667 -3.5676 36 1 9.7637 -4.0810 -1.8315 37 1 11.9231 1.0229 -2.4624 38 1 9.4018 0.9333 -2.3909 39 1 5.9112 -2.1195 0.9100 40 1 5.9158 -3.6635 0.0248 41 1 3.6544 -3.1480 0.9030 42 1 3.6618 -3.1531 -0.8770 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173334785.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:45 Heat of formation + Delta-G solvation = 9.790609 kcal Electronic energy + Delta-G solvation = -21187.241104 eV Core-core repulsion = 18257.262567 eV Total energy + Delta-G solvation = -2929.978537 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.85775 -39.45290 -36.31400 -34.98607 -33.78874 -31.62783 -30.58155 -28.70337 -27.53526 -25.57743 -23.53757 -23.41271 -22.44688 -21.30282 -20.72866 -19.25563 -18.74634 -18.09626 -17.13541 -17.05043 -16.14040 -15.52711 -15.24036 -14.99435 -14.87067 -14.68460 -14.57236 -14.33650 -13.77149 -13.61297 -13.46996 -13.23828 -12.98294 -12.74571 -12.54837 -12.40699 -12.29108 -12.11651 -11.97592 -11.82543 -11.78315 -11.64702 -11.58778 -11.18804 -10.91057 -10.79208 -10.58507 -9.54859 -9.41824 -9.08695 -8.29781 -6.32228 0.11402 0.59751 1.10298 1.27588 1.33403 1.44193 1.69211 2.31640 3.05884 3.23764 3.55160 3.66384 3.87171 4.00371 4.10604 4.26799 4.31080 4.48771 4.50116 4.53334 4.56065 4.60877 4.71311 4.74731 4.80523 4.85187 4.90693 4.95679 5.03740 5.12011 5.17450 5.20303 5.23770 5.31374 5.39044 5.43921 5.45896 5.55731 5.64146 5.72621 5.83755 6.16752 6.34919 6.47683 6.76281 7.33219 8.87498 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.029070 B = 0.003629 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.976216 B = 7712.822953 C = 8364.414691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.008 3.992 3 Si 0.952 3.048 4 H -0.270 1.270 5 H -0.301 1.301 6 H -0.247 1.247 7 C -0.517 4.517 8 H 0.032 0.968 9 C 0.013 3.987 10 C -0.113 4.113 11 C -0.139 4.139 12 C 0.102 3.898 13 N -0.666 5.666 14 C 0.146 3.854 15 H 0.047 0.953 16 C -0.106 4.106 17 C -0.035 4.035 18 C -0.192 4.192 19 S 0.125 5.875 20 C -0.217 4.217 21 C -0.129 4.129 22 C -0.151 4.151 23 C -0.092 4.092 24 C -0.094 4.094 25 H 0.264 0.736 26 H 0.019 0.981 27 H 0.053 0.947 28 H 0.028 0.972 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.342 0.658 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.188 0.812 38 H 0.140 0.860 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.047 0.953 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.811 -3.022 -7.205 27.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.188 4.188 3 Si 0.779 3.221 4 H -0.196 1.196 5 H -0.229 1.229 6 H -0.171 1.171 7 C -0.555 4.555 8 H 0.050 0.950 9 C -0.006 4.006 10 C -0.151 4.151 11 C -0.178 4.178 12 C -0.008 4.008 13 N -0.296 5.296 14 C 0.035 3.965 15 H 0.065 0.935 16 C -0.146 4.146 17 C -0.075 4.075 18 C -0.310 4.310 19 S 0.390 5.610 20 C -0.352 4.352 21 C -0.159 4.159 22 C -0.163 4.163 23 C -0.130 4.130 24 C -0.132 4.132 25 H 0.073 0.927 26 H 0.037 0.963 27 H 0.071 0.929 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.161 0.839 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.205 0.795 38 H 0.158 0.842 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.065 0.935 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 28.251 -4.174 -7.261 29.466 hybrid contribution -2.215 2.637 0.012 3.444 sum 26.036 -1.537 -7.249 27.070 Atomic orbital electron populations 1.70062 1.08225 1.27857 1.53299 1.25908 0.95399 1.03021 0.94493 0.85790 0.79086 0.78774 0.78410 1.19583 1.22938 1.17124 1.21506 0.92024 0.92755 1.49201 0.94972 1.19122 0.92894 0.94795 0.93743 1.21770 0.94889 0.98582 0.99853 1.22228 0.95571 0.98653 1.01337 1.21473 0.86547 0.93812 0.98972 1.60802 1.06236 1.51790 1.10752 1.20975 0.89775 0.95625 0.90135 0.93497 1.22343 0.96128 0.95428 1.00654 1.20799 0.93521 0.90412 1.02746 1.26211 0.96046 1.01884 1.06887 1.83937 1.05034 0.98826 1.73247 1.25584 0.97760 1.01339 1.10475 1.19840 0.95017 0.97351 1.03664 1.20688 0.96734 0.92744 1.06130 1.21414 0.93641 1.00787 0.97176 1.21353 0.95101 0.96273 1.00504 0.92712 0.96332 0.92850 0.95341 0.92270 0.91982 0.90496 0.83918 0.89364 0.89997 0.89554 0.89595 0.79528 0.84229 0.92537 0.90633 0.93458 0.93266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.74 13.96 21.45 0.30 -60.44 16 2 C 0.01 0.48 5.45 84.66 0.46 0.94 16 3 Si 0.95 45.99 24.37 68.60 1.67 47.66 16 4 H -0.27 -12.43 6.88 99.48 0.68 -11.75 16 5 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 6 H -0.25 -11.07 6.52 99.48 0.65 -10.43 16 7 C -0.52 -29.77 9.14 25.60 0.23 -29.54 16 8 H 0.03 2.05 7.99 -2.91 -0.02 2.02 16 9 C 0.01 0.61 1.69 -11.54 -0.02 0.59 16 10 C -0.11 -4.60 4.68 30.59 0.14 -4.46 16 11 C -0.14 -4.32 5.16 30.60 0.16 -4.17 16 12 C 0.10 2.77 2.32 44.92 0.10 2.88 16 13 N -0.67 -15.42 6.08 -467.83 -2.84 -18.26 16 14 C 0.15 3.12 2.98 45.23 0.13 3.25 16 15 H 0.05 1.08 7.33 -2.39 -0.02 1.06 16 16 C -0.11 -1.91 6.78 31.39 0.21 -1.70 16 17 C -0.04 -0.59 6.80 30.71 0.21 -0.38 16 18 C -0.19 -3.73 7.35 25.13 0.18 -3.54 16 19 S 0.12 2.06 23.35 -56.49 -1.32 0.74 16 20 C -0.22 -3.54 11.18 66.66 0.75 -2.79 16 21 C -0.13 -2.48 10.17 21.56 0.22 -2.26 16 22 C -0.15 -3.15 5.86 -19.73 -0.12 -3.27 16 23 C -0.09 -2.74 5.53 30.61 0.17 -2.57 16 24 C -0.09 -3.60 5.15 30.61 0.16 -3.44 16 25 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 26 H 0.02 0.87 7.19 -2.39 -0.02 0.86 16 27 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.03 1.24 3.29 -2.38 -0.01 1.23 16 29 H 0.06 1.83 8.13 -2.39 -0.02 1.81 16 30 H 0.06 1.75 7.63 -2.39 -0.02 1.73 16 31 H 0.08 2.12 7.82 -2.39 -0.02 2.10 16 32 H 0.34 8.00 8.10 -89.69 -0.73 7.28 16 33 H 0.09 1.63 8.09 -2.38 -0.02 1.61 16 34 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.19 2.07 8.06 -2.91 -0.02 2.04 16 38 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 39 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -65.19 333.63 1.01 -64.18 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.20 Total: 16.57 kcal Atomic # 6 Polarization: -53.45 SS G_CDS: 3.00 Total: -50.45 kcal Atomic # 7 Polarization: -76.16 SS G_CDS: -2.54 Total: -78.70 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.67 Total: 47.66 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -1.32 Total: 0.74 kcal Total: -65.19 1.01 -64.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334785.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.972 kcal (2) G-P(sol) polarization free energy of solvation -65.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds