Wall clock time and date at job start Tue Mar 31 2020 07:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86809 * 120.00004 * 2 1 4 4 H 1.48496 * 109.47059 * 264.77306 * 3 2 1 5 5 H 1.48493 * 109.46857 * 24.77487 * 3 2 1 6 6 H 1.48504 * 109.47078 * 144.77484 * 3 2 1 7 7 C 1.37873 * 120.00312 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99623 * 5.97838 * 7 2 1 9 9 C 1.50698 * 120.00566 * 185.98484 * 7 2 1 10 10 C 1.53002 * 109.47520 * 95.15235 * 9 7 2 11 11 C 1.52992 * 109.47354 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47265 * 300.00020 * 11 10 9 13 13 N 1.46895 * 109.47568 * 179.97438 * 12 11 10 14 14 C 1.46989 * 110.99668 * 70.38528 * 13 12 11 15 15 C 1.53349 * 109.09708 * 163.95342 * 14 13 12 16 16 C 1.51418 * 108.07406 * 48.80528 * 15 14 13 17 17 S 1.75592 * 125.99376 * 164.46661 * 16 15 14 18 18 C 1.75789 * 91.04279 * 180.02562 * 17 16 15 19 19 C 1.33024 * 109.60260 * 359.97438 * 18 17 16 20 20 C 1.34802 * 123.96199 * 344.51285 * 16 15 14 21 21 C 1.46903 * 111.00202 * 306.05107 * 13 12 11 22 22 C 1.53002 * 109.46951 * 59.99733 * 12 11 10 23 23 C 1.52996 * 109.47171 * 215.15444 * 9 7 2 24 24 H 0.96997 * 120.00058 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46667 * 335.15498 * 9 7 2 26 26 H 1.09005 * 109.47048 * 300.00402 * 10 9 7 27 27 H 1.08999 * 109.47063 * 59.99971 * 10 9 7 28 28 H 1.09002 * 109.47786 * 180.02562 * 11 10 9 29 29 H 1.08999 * 109.47404 * 59.99757 * 11 10 9 30 30 H 1.08999 * 109.46695 * 300.00171 * 12 11 10 31 31 H 1.09000 * 109.53416 * 283.83342 * 14 13 12 32 32 H 1.09004 * 109.53257 * 44.06455 * 14 13 12 33 33 H 1.09000 * 109.72653 * 289.17657 * 15 14 13 34 34 H 1.08991 * 109.79752 * 168.48388 * 15 14 13 35 35 H 1.08002 * 125.19929 * 179.97438 * 18 17 16 36 36 H 1.07996 * 122.17064 * 180.02562 * 19 18 17 37 37 H 1.09001 * 109.60716 * 296.57634 * 21 13 12 38 38 H 1.08996 * 109.61244 * 57.08763 * 21 13 12 39 39 H 1.08996 * 109.47195 * 180.02562 * 22 12 11 40 40 H 1.09004 * 109.46936 * 60.00207 * 22 12 11 41 41 H 1.08996 * 109.47554 * 299.99328 * 23 9 7 42 42 H 1.09003 * 109.47239 * 59.99738 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6071 1.9827 -1.3942 5 1 1.3957 2.6820 0.5867 6 1 3.4871 1.4746 0.8076 7 6 2.0045 -1.1940 -0.0005 8 1 1.4689 -2.1267 -0.0984 9 6 3.5053 -1.1977 0.1355 10 6 3.8839 -1.4038 1.6036 11 6 5.4076 -1.4069 1.7417 12 6 5.9938 -2.5420 0.8997 13 7 7.4568 -2.5446 1.0318 14 6 7.8635 -2.9822 2.3748 15 6 9.3509 -3.3549 2.3521 16 6 10.1068 -2.2296 1.6774 17 16 11.8433 -1.9747 1.7323 18 6 11.6969 -0.5406 0.7262 19 6 10.4184 -0.3403 0.4180 20 6 9.5216 -1.2667 0.9376 21 6 8.0171 -1.2258 0.7079 22 6 5.6152 -2.3358 -0.5684 23 6 4.0910 -2.3330 -0.7064 24 1 -0.4850 0.8400 0.0004 25 1 3.9039 -0.2445 -0.2121 26 1 3.4667 -0.5950 2.2034 27 1 3.4853 -2.3569 1.9512 28 1 5.6774 -1.5542 2.7875 29 1 5.8059 -0.4537 1.3942 30 1 5.5955 -3.4952 1.2472 31 1 7.7016 -2.1726 3.0865 32 1 7.2745 -3.8509 2.6690 33 1 9.4900 -4.2795 1.7919 34 1 9.7148 -3.4837 3.3713 35 1 12.5192 0.0825 0.4070 36 1 10.0979 0.4887 -0.1955 37 1 7.8128 -0.9880 -0.3361 38 1 7.5690 -0.4696 1.3524 39 1 6.0324 -3.1446 -1.1682 40 1 6.0135 -1.3825 -0.9159 41 1 3.6924 -3.2861 -0.3588 42 1 3.8213 -2.1861 -1.7523 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173336418.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:39 Heat of formation + Delta-G solvation = 19.609090 kcal Electronic energy + Delta-G solvation = -21456.792279 eV Core-core repulsion = 18527.239503 eV Total energy + Delta-G solvation = -2929.552776 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.96541 -37.86868 -35.57219 -32.96729 -31.77796 -30.09790 -29.65117 -28.67434 -25.36197 -23.95325 -23.64370 -22.08388 -21.44711 -19.92442 -18.93630 -18.03328 -17.21703 -16.78217 -15.70884 -15.40784 -14.93488 -14.52694 -14.41266 -13.74108 -13.64366 -13.23461 -13.14852 -12.98390 -12.80933 -12.50291 -12.19258 -11.86565 -11.78527 -11.69695 -11.45904 -11.21767 -11.12530 -10.94865 -10.73790 -10.61157 -10.30571 -10.19557 -9.73556 -9.46475 -9.17756 -8.89787 -8.65446 -8.49593 -8.43114 -8.02607 -6.05751 -4.03563 0.90617 1.51581 1.88480 2.59742 3.29000 3.37463 3.38983 3.90669 4.43712 4.59762 4.73058 4.97467 5.09295 5.18997 5.20924 5.24813 5.31803 5.40911 5.51187 5.59901 5.62182 5.68113 5.78462 5.88059 5.94424 5.96294 6.01194 6.14776 6.20308 6.26764 6.31686 6.40696 6.49507 6.61697 6.67044 6.81813 6.95407 7.03781 7.20222 7.25414 7.41734 7.55539 7.82490 8.56384 9.00658 9.58708 11.08024 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.028994 B = 0.003810 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.490018 B = 7346.429476 C = 7819.960607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.069 3.931 3 Si 0.876 3.124 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.266 1.266 7 C -0.510 4.510 8 H 0.071 0.929 9 C 0.015 3.985 10 C -0.104 4.104 11 C -0.153 4.153 12 C 0.090 3.910 13 N -0.533 5.533 14 C 0.058 3.942 15 C -0.042 4.042 16 C -0.168 4.168 17 S 0.081 5.919 18 C -0.219 4.219 19 C -0.121 4.121 20 C -0.105 4.105 21 C 0.112 3.888 22 C -0.109 4.109 23 C -0.102 4.102 24 H 0.262 0.738 25 H 0.028 0.972 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.162 0.838 36 H 0.138 0.862 37 H 0.091 0.909 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.762 -3.754 3.963 23.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.190 1.190 7 C -0.548 4.548 8 H 0.090 0.910 9 C -0.004 4.004 10 C -0.142 4.142 11 C -0.192 4.192 12 C -0.017 4.017 13 N -0.256 5.256 14 C -0.072 4.072 15 C -0.081 4.081 16 C -0.285 4.285 17 S 0.346 5.654 18 C -0.354 4.354 19 C -0.152 4.152 20 C -0.117 4.117 21 C -0.018 4.018 22 C -0.147 4.147 23 C -0.140 4.140 24 H 0.072 0.928 25 H 0.046 0.954 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.180 0.820 36 H 0.156 0.844 37 H 0.110 0.890 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 24.058 -4.720 4.298 24.890 hybrid contribution -0.990 2.436 -0.105 2.631 sum 23.068 -2.285 4.193 23.557 Atomic orbital electron populations 1.69915 1.06333 1.26849 1.51067 1.25072 0.94640 0.98936 0.94546 0.86872 0.80180 0.83835 0.78700 1.20269 1.21793 1.19036 1.21051 0.89561 0.94460 1.49680 0.91040 1.19151 0.96342 0.94197 0.90752 1.21738 0.91046 1.00971 1.00492 1.22322 0.99459 0.98959 0.98507 1.21789 0.84235 0.98781 0.96905 1.62220 1.10725 1.26280 1.26336 1.22102 0.94555 1.00344 0.90189 1.20388 0.93541 0.94993 0.99196 1.24784 0.95462 1.02379 1.05923 1.84008 1.05228 1.24784 1.51385 1.25307 1.00588 1.02527 1.06981 1.19952 0.92074 1.00819 1.02311 1.19692 0.96741 0.95533 0.99723 1.21093 0.87945 0.90829 1.01946 1.21657 0.97847 1.00973 0.94243 1.21564 0.91793 1.00118 1.00541 0.92773 0.95382 0.93208 0.92870 0.93464 0.92452 0.89963 0.94179 0.89944 0.89610 0.90465 0.82009 0.84432 0.89043 0.92582 0.92334 0.92773 0.92922 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.56 13.96 55.43 0.77 -26.78 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.51 27.02 -169.99 -4.59 16.91 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.27 -6.22 6.78 56.52 0.38 -5.84 16 7 C -0.51 -14.02 8.86 -34.44 -0.30 -14.33 16 8 H 0.07 2.14 8.06 -52.48 -0.42 1.72 16 9 C 0.01 0.33 1.79 -91.77 -0.16 0.16 16 10 C -0.10 -2.10 5.19 -26.73 -0.14 -2.24 16 11 C -0.15 -2.52 4.48 -26.73 -0.12 -2.64 16 12 C 0.09 1.35 2.18 -67.71 -0.15 1.20 16 13 N -0.53 -7.14 4.54 -226.82 -1.03 -8.17 16 14 C 0.06 0.67 4.99 -3.59 -0.02 0.65 16 15 C -0.04 -0.43 6.50 -27.35 -0.18 -0.61 16 16 C -0.17 -1.97 6.42 -35.17 -0.23 -2.20 16 17 S 0.08 0.82 23.32 -107.50 -2.51 -1.69 16 18 C -0.22 -2.18 11.21 28.92 0.32 -1.85 16 19 C -0.12 -1.34 10.02 -41.11 -0.41 -1.75 16 20 C -0.10 -1.31 5.85 -104.79 -0.61 -1.92 16 21 C 0.11 1.48 4.90 -4.20 -0.02 1.46 16 22 C -0.11 -1.75 5.13 -26.71 -0.14 -1.89 16 23 C -0.10 -1.97 5.19 -26.71 -0.14 -2.11 16 24 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.03 0.65 5.24 -51.93 -0.27 0.38 16 26 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.05 0.72 7.08 -51.93 -0.37 0.35 16 29 H 0.06 0.97 6.26 -51.93 -0.33 0.64 16 30 H 0.08 1.23 7.86 -51.93 -0.41 0.82 16 31 H 0.04 0.48 7.33 -51.93 -0.38 0.10 16 32 H 0.08 0.87 7.81 -51.93 -0.41 0.47 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.16 1.21 8.06 -52.49 -0.42 0.78 16 36 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.09 1.22 6.64 -51.93 -0.34 0.88 16 38 H 0.06 0.78 6.05 -51.93 -0.31 0.47 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.87 6.63 -51.93 -0.34 0.52 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 328.38 15.07 4.95 4.95 Total: -1.00 -29.58 328.38 -11.34 -40.92 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -6.54 Total: 0.06 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: -2.39 Total: -26.19 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: -0.26 Total: -34.96 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.59 Total: 16.91 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.51 Total: -1.69 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.58 -11.34 -40.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173336418.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.529 kcal (2) G-P(sol) polarization free energy of solvation -29.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds