Wall clock time and date at job start Tue Mar 31 2020 07:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86809 * 120.00004 * 2 1 4 4 H 1.48496 * 109.47059 * 264.77306 * 3 2 1 5 5 H 1.48493 * 109.46857 * 24.77487 * 3 2 1 6 6 H 1.48504 * 109.47078 * 144.77484 * 3 2 1 7 7 C 1.37873 * 120.00312 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99623 * 5.97838 * 7 2 1 9 9 C 1.50698 * 120.00566 * 185.98484 * 7 2 1 10 10 C 1.53002 * 109.47520 * 95.15235 * 9 7 2 11 11 C 1.52992 * 109.47354 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47265 * 300.00020 * 11 10 9 13 13 N 1.46895 * 109.47568 * 179.97438 * 12 11 10 14 14 C 1.46989 * 110.99668 * 70.38528 * 13 12 11 15 15 C 1.53349 * 109.09708 * 163.95342 * 14 13 12 16 16 C 1.51418 * 108.07406 * 48.80528 * 15 14 13 17 17 S 1.75592 * 125.99376 * 164.46661 * 16 15 14 18 18 C 1.75789 * 91.04279 * 180.02562 * 17 16 15 19 19 C 1.33024 * 109.60260 * 359.97438 * 18 17 16 20 20 C 1.34802 * 123.96199 * 344.51285 * 16 15 14 21 21 C 1.46903 * 111.00202 * 306.05107 * 13 12 11 22 22 C 1.53002 * 109.46951 * 59.99733 * 12 11 10 23 23 C 1.52996 * 109.47171 * 215.15444 * 9 7 2 24 24 H 0.96997 * 120.00058 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46667 * 335.15498 * 9 7 2 26 26 H 1.09005 * 109.47048 * 300.00402 * 10 9 7 27 27 H 1.08999 * 109.47063 * 59.99971 * 10 9 7 28 28 H 1.09002 * 109.47786 * 180.02562 * 11 10 9 29 29 H 1.08999 * 109.47404 * 59.99757 * 11 10 9 30 30 H 1.08999 * 109.46695 * 300.00171 * 12 11 10 31 31 H 1.09000 * 109.53416 * 283.83342 * 14 13 12 32 32 H 1.09004 * 109.53257 * 44.06455 * 14 13 12 33 33 H 1.09000 * 109.72653 * 289.17657 * 15 14 13 34 34 H 1.08991 * 109.79752 * 168.48388 * 15 14 13 35 35 H 1.08002 * 125.19929 * 179.97438 * 18 17 16 36 36 H 1.07996 * 122.17064 * 180.02562 * 19 18 17 37 37 H 1.09001 * 109.60716 * 296.57634 * 21 13 12 38 38 H 1.08996 * 109.61244 * 57.08763 * 21 13 12 39 39 H 1.08996 * 109.47195 * 180.02562 * 22 12 11 40 40 H 1.09004 * 109.46936 * 60.00207 * 22 12 11 41 41 H 1.08996 * 109.47554 * 299.99328 * 23 9 7 42 42 H 1.09003 * 109.47239 * 59.99738 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6071 1.9827 -1.3942 5 1 1.3957 2.6820 0.5867 6 1 3.4871 1.4746 0.8076 7 6 2.0045 -1.1940 -0.0005 8 1 1.4689 -2.1267 -0.0984 9 6 3.5053 -1.1977 0.1355 10 6 3.8839 -1.4038 1.6036 11 6 5.4076 -1.4069 1.7417 12 6 5.9938 -2.5420 0.8997 13 7 7.4568 -2.5446 1.0318 14 6 7.8635 -2.9822 2.3748 15 6 9.3509 -3.3549 2.3521 16 6 10.1068 -2.2296 1.6774 17 16 11.8433 -1.9747 1.7323 18 6 11.6969 -0.5406 0.7262 19 6 10.4184 -0.3403 0.4180 20 6 9.5216 -1.2667 0.9376 21 6 8.0171 -1.2258 0.7079 22 6 5.6152 -2.3358 -0.5684 23 6 4.0910 -2.3330 -0.7064 24 1 -0.4850 0.8400 0.0004 25 1 3.9039 -0.2445 -0.2121 26 1 3.4667 -0.5950 2.2034 27 1 3.4853 -2.3569 1.9512 28 1 5.6774 -1.5542 2.7875 29 1 5.8059 -0.4537 1.3942 30 1 5.5955 -3.4952 1.2472 31 1 7.7016 -2.1726 3.0865 32 1 7.2745 -3.8509 2.6690 33 1 9.4900 -4.2795 1.7919 34 1 9.7148 -3.4837 3.3713 35 1 12.5192 0.0825 0.4070 36 1 10.0979 0.4887 -0.1955 37 1 7.8128 -0.9880 -0.3361 38 1 7.5690 -0.4696 1.3524 39 1 6.0324 -3.1446 -1.1682 40 1 6.0135 -1.3825 -0.9159 41 1 3.6924 -3.2861 -0.3588 42 1 3.8213 -2.1861 -1.7523 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173336418.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:38 Heat of formation + Delta-G solvation = 3.309515 kcal Electronic energy + Delta-G solvation = -21457.499081 eV Core-core repulsion = 18527.239503 eV Total energy + Delta-G solvation = -2930.259578 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.03030 -39.04395 -36.76256 -34.65519 -33.21140 -31.55689 -30.76765 -29.94817 -26.76923 -25.23666 -24.63326 -23.45670 -22.62860 -21.27322 -20.36322 -19.04086 -18.80921 -18.04598 -16.86099 -16.59153 -16.13658 -15.79708 -15.39962 -15.14628 -15.04944 -14.58070 -14.50698 -14.15931 -14.08035 -13.88170 -13.24563 -13.20932 -12.99117 -12.96185 -12.79161 -12.63909 -12.47154 -12.18810 -12.06830 -11.79942 -11.73328 -11.56938 -11.49879 -11.11661 -10.89166 -10.70504 -10.58485 -9.43435 -9.34291 -9.03625 -8.27361 -6.29025 0.10863 0.74292 1.10011 1.33959 1.34672 1.45653 1.76427 2.35708 2.87402 3.08825 3.74900 3.83657 3.92298 4.04615 4.16972 4.27434 4.35206 4.42557 4.45115 4.49925 4.54272 4.61572 4.67982 4.73990 4.78759 4.81270 4.87487 4.89987 4.93612 5.08101 5.10436 5.17749 5.23739 5.27384 5.39840 5.41085 5.46474 5.62884 5.66940 5.75526 5.86439 6.15675 6.17643 6.37506 6.79185 7.36491 8.90159 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.028994 B = 0.003810 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.490018 B = 7346.429476 C = 7819.960607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.008 3.992 3 Si 0.940 3.060 4 H -0.267 1.267 5 H -0.291 1.291 6 H -0.246 1.246 7 C -0.512 4.512 8 H 0.030 0.970 9 C 0.013 3.987 10 C -0.100 4.100 11 C -0.142 4.142 12 C 0.098 3.902 13 N -0.532 5.532 14 C 0.055 3.945 15 C -0.039 4.039 16 C -0.184 4.184 17 S 0.102 5.898 18 C -0.217 4.217 19 C -0.138 4.138 20 C -0.123 4.123 21 C 0.112 3.888 22 C -0.099 4.099 23 C -0.097 4.097 24 H 0.264 0.736 25 H 0.026 0.974 26 H 0.031 0.969 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.036 0.964 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.186 0.814 36 H 0.147 0.853 37 H 0.087 0.913 38 H 0.048 0.952 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.048 0.952 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.220 -3.520 4.468 26.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.188 4.188 3 Si 0.765 3.235 4 H -0.192 1.192 5 H -0.218 1.218 6 H -0.170 1.170 7 C -0.550 4.550 8 H 0.048 0.952 9 C -0.006 4.006 10 C -0.138 4.138 11 C -0.181 4.181 12 C -0.010 4.010 13 N -0.254 5.254 14 C -0.074 4.074 15 C -0.078 4.078 16 C -0.302 4.302 17 S 0.367 5.633 18 C -0.352 4.352 19 C -0.169 4.169 20 C -0.135 4.135 21 C -0.017 4.017 22 C -0.137 4.137 23 C -0.136 4.136 24 H 0.072 0.928 25 H 0.045 0.955 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.054 0.946 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.203 0.797 36 H 0.165 0.835 37 H 0.105 0.895 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 27.547 -4.503 4.806 28.324 hybrid contribution -2.071 2.267 -0.258 3.082 sum 25.476 -2.236 4.548 25.975 Atomic orbital electron populations 1.70071 1.08283 1.27853 1.53297 1.25945 0.95380 1.02955 0.94510 0.85835 0.79372 0.78901 0.79409 1.19209 1.21786 1.16976 1.21401 0.92366 0.92801 1.48462 0.95201 1.19158 0.93004 0.95445 0.93030 1.21568 0.94105 1.00025 0.98151 1.22203 0.96099 0.99758 1.00049 1.21636 0.85512 0.98207 0.95631 1.62206 1.09123 1.26454 1.27665 1.22203 0.95704 1.00560 0.88947 1.20419 0.92442 0.94648 1.00281 1.25060 0.96672 1.02587 1.05877 1.83936 1.03778 1.24607 1.50976 1.25663 1.00927 1.02461 1.06100 1.20107 0.92426 1.01273 1.03080 1.19757 0.96398 0.96576 1.00805 1.21042 0.88795 0.90383 1.01507 1.21530 0.94839 1.01818 0.95535 1.21437 0.94398 0.98492 0.99228 0.92757 0.95546 0.95026 0.93285 0.91747 0.92523 0.89579 0.94584 0.88854 0.89189 0.88603 0.79658 0.83494 0.89464 0.93382 0.90809 0.92444 0.93328 0.93414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.26 13.96 21.44 0.30 -59.96 16 2 C 0.01 0.48 5.47 84.65 0.46 0.95 16 3 Si 0.94 44.58 27.02 68.60 1.85 46.43 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 6 H -0.25 -10.79 6.78 99.48 0.67 -10.11 16 7 C -0.51 -29.07 8.86 25.60 0.23 -28.85 16 8 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 9 C 0.01 0.56 1.79 -11.54 -0.02 0.54 16 10 C -0.10 -3.98 5.19 30.59 0.16 -3.82 16 11 C -0.14 -4.38 4.48 30.59 0.14 -4.25 16 12 C 0.10 2.71 2.18 44.92 0.10 2.81 16 13 N -0.53 -12.91 4.54 -871.53 -3.96 -16.88 16 14 C 0.06 1.12 4.99 86.40 0.43 1.55 16 15 C -0.04 -0.68 6.50 30.19 0.20 -0.49 16 16 C -0.18 -3.86 6.42 25.12 0.16 -3.70 16 17 S 0.10 1.77 23.32 -56.49 -1.32 0.45 16 18 C -0.22 -3.69 11.21 66.66 0.75 -2.94 16 19 C -0.14 -2.76 10.02 21.29 0.21 -2.55 16 20 C -0.12 -2.81 5.85 -19.97 -0.12 -2.92 16 21 C 0.11 2.75 4.90 86.05 0.42 3.17 16 22 C -0.10 -2.99 5.13 30.61 0.16 -2.84 16 23 C -0.10 -3.71 5.19 30.61 0.16 -3.55 16 24 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 25 H 0.03 1.20 5.24 -2.38 -0.01 1.18 16 26 H 0.03 1.34 8.14 -2.38 -0.02 1.33 16 27 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.06 1.79 7.08 -2.39 -0.02 1.77 16 29 H 0.06 1.78 6.26 -2.39 -0.01 1.77 16 30 H 0.09 2.35 7.86 -2.39 -0.02 2.33 16 31 H 0.04 0.77 7.33 -2.39 -0.02 0.75 16 32 H 0.09 1.70 7.81 -2.38 -0.02 1.68 16 33 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.19 2.14 8.06 -2.91 -0.02 2.11 16 36 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 37 H 0.09 2.16 6.64 -2.39 -0.02 2.15 16 38 H 0.05 1.24 6.05 -2.39 -0.01 1.23 16 39 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.06 1.71 6.63 -2.38 -0.02 1.69 16 41 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -65.00 328.38 1.27 -63.73 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.97 Total: 13.10 kcal Atomic # 6 Polarization: -50.32 SS G_CDS: 3.43 Total: -46.88 kcal Atomic # 7 Polarization: -73.18 SS G_CDS: -3.66 Total: -76.84 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.85 Total: 46.43 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -1.32 Total: 0.45 kcal Total: -65.00 1.27 -63.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173336418.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.038 kcal (2) G-P(sol) polarization free energy of solvation -65.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds