Wall clock time and date at job start Tue Mar 31 2020 06:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37103 * 119.99956 * 2 1 4 4 H 1.08002 * 119.99658 * 204.39652 * 3 2 1 5 5 C 1.38953 * 119.99742 * 24.38860 * 3 2 1 6 6 N 1.31409 * 120.00156 * 12.64377 * 5 3 2 7 7 Si 1.86798 * 119.99546 * 192.63942 * 5 3 2 8 8 H 1.48504 * 109.46797 * 90.00503 * 7 5 3 9 9 H 1.48503 * 109.47188 * 209.99911 * 7 5 3 10 10 H 1.48498 * 109.47318 * 330.00503 * 7 5 3 11 11 C 1.34776 * 120.00006 * 179.97438 * 2 1 3 12 12 O 1.21297 * 119.99593 * 179.97438 * 11 2 1 13 13 C 1.50700 * 120.00019 * 0.02562 * 11 2 1 14 14 C 1.53002 * 109.46806 * 179.97438 * 13 11 2 15 15 H 1.08997 * 109.67684 * 304.49155 * 14 13 11 16 16 C 1.53317 * 109.67750 * 183.94192 * 14 13 11 17 17 C 1.52727 * 108.38188 * 170.41168 * 16 14 13 18 18 C 1.50637 * 110.58079 * 51.15420 * 17 16 14 19 19 C 1.38871 * 117.72519 * 162.48570 * 18 17 16 20 20 C 1.38161 * 120.52786 * 179.43221 * 19 18 17 21 21 F 1.35098 * 120.14547 * 179.97438 * 20 19 18 22 22 C 1.38493 * 119.71152 * 0.02562 * 20 19 18 23 23 C 1.37887 * 119.74345 * 0.13771 * 22 20 19 24 24 C 1.37683 * 122.56114 * 342.15776 * 18 17 16 25 25 C 1.50644 * 122.55405 * 0.74024 * 24 18 17 26 26 H 1.09004 * 109.46740 * 265.86710 * 1 2 3 27 27 H 1.09002 * 109.46619 * 145.86933 * 1 2 3 28 28 H 1.08998 * 109.47135 * 25.86781 * 1 2 3 29 29 H 0.97003 * 119.99633 * 179.97438 * 6 5 3 30 30 H 1.08996 * 109.46710 * 299.99274 * 13 11 2 31 31 H 1.09000 * 109.47022 * 59.99773 * 13 11 2 32 32 H 1.09009 * 109.68456 * 290.12966 * 16 14 13 33 33 H 1.09005 * 109.68669 * 50.68219 * 16 14 13 34 34 H 1.08993 * 109.25094 * 290.87071 * 17 16 14 35 35 H 1.09007 * 109.25585 * 171.43503 * 17 16 14 36 36 H 1.08006 * 119.73773 * 359.41624 * 19 18 17 37 37 H 1.07994 * 120.12653 * 180.10684 * 22 20 19 38 38 H 1.08004 * 119.70847 * 179.97438 * 23 22 20 39 39 H 1.08996 * 109.25000 * 221.97442 * 25 24 18 40 40 H 1.09000 * 109.24698 * 102.55668 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1582 1.2291 -0.3863 5 6 1.5487 2.3370 0.4969 6 7 0.4345 2.2492 1.1880 7 14 2.3237 4.0073 0.1826 8 1 1.7869 4.5719 -1.0817 9 1 2.0033 4.9214 1.3082 10 1 3.7968 3.8565 0.0712 11 6 2.1389 -1.1672 0.0005 12 8 3.3519 -1.1671 0.0001 13 6 1.3854 -2.4723 0.0005 14 6 2.3797 -3.6352 0.0005 15 1 3.0600 -3.5364 -0.8454 16 6 1.6206 -4.9635 -0.0987 17 6 2.6341 -6.0808 -0.3377 18 6 3.7442 -6.0150 0.6785 19 6 4.5346 -7.1445 0.8460 20 6 5.5761 -7.1439 1.7538 21 9 6.3398 -8.2472 1.9108 22 6 5.8332 -6.0077 2.5028 23 6 5.0460 -4.8876 2.3387 24 6 3.9977 -4.8875 1.4270 25 6 3.1759 -3.6310 1.3039 26 1 -0.3633 -0.0741 1.0251 27 1 -0.3632 -0.8507 -0.5766 28 1 -0.3633 0.9247 -0.4484 29 1 0.0146 3.0518 1.5352 30 1 0.7586 -2.5298 0.8903 31 1 0.7591 -2.5302 -0.8897 32 1 1.0821 -5.1490 0.8307 33 1 0.9163 -4.9228 -0.9297 34 1 3.0554 -5.9761 -1.3374 35 1 2.1316 -7.0449 -0.2591 36 1 4.3334 -8.0305 0.2621 37 1 6.6466 -5.9993 3.2131 38 1 5.2467 -4.0020 2.9235 39 1 3.8383 -2.7656 1.3177 40 1 2.4865 -3.5686 2.1459 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186153715.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:52 Heat of formation + Delta-G solvation = -70.849851 kcal Electronic energy + Delta-G solvation = -22872.224506 eV Core-core repulsion = 19372.535960 eV Total energy + Delta-G solvation = -3499.688546 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.88179 -40.05542 -38.47222 -36.09266 -34.57636 -32.65944 -31.69947 -30.77665 -29.26866 -27.02141 -25.97286 -24.24140 -23.50284 -22.36040 -21.75415 -19.41926 -18.59429 -17.18470 -16.83875 -16.37450 -15.97414 -15.74335 -15.58275 -14.77667 -14.43430 -14.29659 -14.24921 -13.92364 -13.54431 -13.31420 -13.16782 -12.85991 -12.45942 -12.12022 -11.99099 -11.79656 -11.41166 -11.33521 -11.26924 -11.10806 -10.96760 -10.87383 -10.45094 -10.38807 -10.33474 -10.23459 -10.05968 -8.99671 -8.87772 -8.40047 -8.21990 -7.63631 -6.31409 -3.87583 1.21122 1.22463 3.16446 3.25219 3.30604 3.58619 3.93070 4.14655 4.23197 4.60628 4.72203 4.81973 4.91523 5.08906 5.14550 5.15278 5.20059 5.28667 5.44556 5.60432 5.68966 5.74428 5.88279 5.94109 6.00335 6.01612 6.08174 6.12627 6.16466 6.22311 6.23336 6.37188 6.47752 6.63596 6.74708 6.81907 6.86434 6.99822 7.19761 7.57515 8.16945 8.50848 9.21264 9.45526 10.02173 10.73560 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.028575 B = 0.003398 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.633632 B = 8238.489575 C = 8899.211072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.449 5.449 3 C -0.306 4.306 4 H 0.097 0.903 5 C 0.030 3.970 6 N -0.884 5.884 7 Si 0.924 3.076 8 H -0.278 1.278 9 H -0.284 1.284 10 H -0.269 1.269 11 C 0.447 3.553 12 O -0.588 6.588 13 C -0.126 4.126 14 C -0.065 4.065 15 H 0.079 0.921 16 C -0.117 4.117 17 C -0.079 4.079 18 C -0.053 4.053 19 C -0.157 4.157 20 C 0.083 3.917 21 F -0.146 7.146 22 C -0.156 4.156 23 C -0.091 4.091 24 C -0.067 4.067 25 C -0.083 4.083 26 H 0.050 0.950 27 H 0.025 0.975 28 H 0.073 0.927 29 H 0.267 0.733 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.106 0.894 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.951 -15.392 -0.178 15.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.168 5.168 3 C -0.434 4.434 4 H 0.115 0.885 5 C -0.173 4.173 6 N -0.523 5.523 7 Si 0.751 3.249 8 H -0.204 1.204 9 H -0.210 1.210 10 H -0.194 1.194 11 C 0.235 3.765 12 O -0.473 6.473 13 C -0.166 4.166 14 C -0.084 4.084 15 H 0.097 0.903 16 C -0.154 4.154 17 C -0.116 4.116 18 C -0.053 4.053 19 C -0.176 4.176 20 C 0.064 3.936 21 F -0.125 7.125 22 C -0.175 4.175 23 C -0.109 4.109 24 C -0.067 4.067 25 C -0.120 4.120 26 H 0.069 0.931 27 H 0.044 0.956 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.124 0.876 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.425 -15.270 -0.076 15.336 hybrid contribution 0.296 0.689 0.078 0.754 sum 1.721 -14.581 0.002 14.682 Atomic orbital electron populations 1.21461 0.81414 0.99806 1.00491 1.43607 1.05384 1.04897 1.62925 1.19648 1.00554 0.84320 1.38892 0.88518 1.25330 0.96662 1.00073 0.95239 1.69991 1.19310 1.29515 1.33490 0.85956 0.79669 0.81459 0.77806 1.20436 1.20994 1.19390 1.20123 0.88119 0.84910 0.83301 1.90468 1.13998 1.87101 1.55731 1.21615 0.98507 0.93805 1.02709 1.20815 0.96385 0.92466 0.98689 0.90279 1.21666 0.97325 0.94308 1.02148 1.20479 0.94157 0.99594 0.97323 1.19502 0.96567 0.92096 0.97122 1.21075 0.96386 0.99892 1.00204 1.17557 0.92731 0.83733 0.99591 1.91466 1.74446 1.51695 1.94909 1.21039 1.02126 0.92751 1.01603 1.21130 0.94211 0.97746 0.97817 1.19952 0.96167 0.95429 0.95135 1.20730 0.98733 0.94960 0.97565 0.93110 0.95616 0.90871 0.92331 0.90373 0.90481 0.91615 0.91248 0.90301 0.90788 0.85257 0.85083 0.84939 0.87609 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.44 8.44 59.85 0.51 2.95 16 2 N -0.45 -11.25 3.01 -122.18 -0.37 -11.62 16 3 C -0.31 -8.44 9.24 -14.93 -0.14 -8.58 16 4 H 0.10 2.80 7.45 -52.49 -0.39 2.41 16 5 C 0.03 0.78 5.04 -17.47 -0.09 0.70 16 6 N -0.88 -23.40 10.83 55.50 0.60 -22.80 16 7 Si 0.92 20.65 29.57 -169.99 -5.03 15.62 16 8 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 11 C 0.45 10.34 7.38 -10.99 -0.08 10.26 16 12 O -0.59 -15.29 13.73 5.54 0.08 -15.22 16 13 C -0.13 -2.14 3.78 -27.88 -0.11 -2.24 16 14 C -0.06 -0.98 1.85 -90.59 -0.17 -1.15 16 15 H 0.08 1.33 7.93 -51.93 -0.41 0.92 16 16 C -0.12 -1.35 5.28 -26.71 -0.14 -1.49 16 17 C -0.08 -0.85 5.67 -28.05 -0.16 -1.01 16 18 C -0.05 -0.67 5.74 -104.62 -0.60 -1.27 16 19 C -0.16 -1.91 9.59 -39.38 -0.38 -2.28 16 20 C 0.08 1.07 7.30 -39.52 -0.29 0.78 16 21 F -0.15 -1.91 17.27 2.25 0.04 -1.87 16 22 C -0.16 -1.94 10.03 -39.62 -0.40 -2.34 16 23 C -0.09 -1.21 9.60 -39.45 -0.38 -1.59 16 24 C -0.07 -0.94 5.74 -104.60 -0.60 -1.55 16 25 C -0.08 -1.31 4.62 -28.05 -0.13 -1.44 16 26 H 0.05 1.13 7.83 -51.93 -0.41 0.73 16 27 H 0.03 0.45 6.61 -51.93 -0.34 0.11 16 28 H 0.07 1.70 6.80 -51.93 -0.35 1.34 16 29 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 30 H 0.08 1.25 8.09 -51.93 -0.42 0.83 16 31 H 0.08 1.17 7.41 -51.93 -0.38 0.78 16 32 H 0.07 0.73 8.10 -51.92 -0.42 0.31 16 33 H 0.07 0.71 8.13 -51.93 -0.42 0.28 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.66 8.13 -51.92 -0.42 0.23 16 36 H 0.13 1.30 8.05 -52.48 -0.42 0.88 16 37 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.13 1.62 8.05 -52.48 -0.42 1.19 16 39 H 0.11 2.01 6.14 -51.93 -0.32 1.69 16 40 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 LS Contribution 326.36 15.07 4.92 4.92 Total: -1.00 -29.93 326.36 -8.45 -38.38 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -5.54 Total: 2.83 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -3.15 Total: -10.26 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.23 Total: -34.41 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: 0.08 Total: -15.22 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.62 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.93 -8.45 -38.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186153715.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.471 kcal (2) G-P(sol) polarization free energy of solvation -29.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds