Wall clock time and date at job start Tue Mar 31 2020 06:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37103 * 119.99956 * 2 1 4 4 H 1.08002 * 119.99658 * 204.39652 * 3 2 1 5 5 C 1.38953 * 119.99742 * 24.38860 * 3 2 1 6 6 N 1.31409 * 120.00156 * 12.64377 * 5 3 2 7 7 Si 1.86798 * 119.99546 * 192.63942 * 5 3 2 8 8 H 1.48504 * 109.46797 * 90.00503 * 7 5 3 9 9 H 1.48503 * 109.47188 * 209.99911 * 7 5 3 10 10 H 1.48498 * 109.47318 * 330.00503 * 7 5 3 11 11 C 1.34776 * 120.00006 * 179.97438 * 2 1 3 12 12 O 1.21297 * 119.99593 * 179.97438 * 11 2 1 13 13 C 1.50700 * 120.00019 * 0.02562 * 11 2 1 14 14 C 1.53002 * 109.46806 * 179.97438 * 13 11 2 15 15 H 1.08997 * 109.67684 * 304.49155 * 14 13 11 16 16 C 1.53317 * 109.67750 * 183.94192 * 14 13 11 17 17 C 1.52727 * 108.38188 * 170.41168 * 16 14 13 18 18 C 1.50637 * 110.58079 * 51.15420 * 17 16 14 19 19 C 1.38871 * 117.72519 * 162.48570 * 18 17 16 20 20 C 1.38161 * 120.52786 * 179.43221 * 19 18 17 21 21 F 1.35098 * 120.14547 * 179.97438 * 20 19 18 22 22 C 1.38493 * 119.71152 * 0.02562 * 20 19 18 23 23 C 1.37887 * 119.74345 * 0.13771 * 22 20 19 24 24 C 1.37683 * 122.56114 * 342.15776 * 18 17 16 25 25 C 1.50644 * 122.55405 * 0.74024 * 24 18 17 26 26 H 1.09004 * 109.46740 * 265.86710 * 1 2 3 27 27 H 1.09002 * 109.46619 * 145.86933 * 1 2 3 28 28 H 1.08998 * 109.47135 * 25.86781 * 1 2 3 29 29 H 0.97003 * 119.99633 * 179.97438 * 6 5 3 30 30 H 1.08996 * 109.46710 * 299.99274 * 13 11 2 31 31 H 1.09000 * 109.47022 * 59.99773 * 13 11 2 32 32 H 1.09009 * 109.68456 * 290.12966 * 16 14 13 33 33 H 1.09005 * 109.68669 * 50.68219 * 16 14 13 34 34 H 1.08993 * 109.25094 * 290.87071 * 17 16 14 35 35 H 1.09007 * 109.25585 * 171.43503 * 17 16 14 36 36 H 1.08006 * 119.73773 * 359.41624 * 19 18 17 37 37 H 1.07994 * 120.12653 * 180.10684 * 22 20 19 38 38 H 1.08004 * 119.70847 * 179.97438 * 23 22 20 39 39 H 1.08996 * 109.25000 * 221.97442 * 25 24 18 40 40 H 1.09000 * 109.24698 * 102.55668 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1582 1.2291 -0.3863 5 6 1.5487 2.3370 0.4969 6 7 0.4345 2.2492 1.1880 7 14 2.3237 4.0073 0.1826 8 1 1.7869 4.5719 -1.0817 9 1 2.0033 4.9214 1.3082 10 1 3.7968 3.8565 0.0712 11 6 2.1389 -1.1672 0.0005 12 8 3.3519 -1.1671 0.0001 13 6 1.3854 -2.4723 0.0005 14 6 2.3797 -3.6352 0.0005 15 1 3.0600 -3.5364 -0.8454 16 6 1.6206 -4.9635 -0.0987 17 6 2.6341 -6.0808 -0.3377 18 6 3.7442 -6.0150 0.6785 19 6 4.5346 -7.1445 0.8460 20 6 5.5761 -7.1439 1.7538 21 9 6.3398 -8.2472 1.9108 22 6 5.8332 -6.0077 2.5028 23 6 5.0460 -4.8876 2.3387 24 6 3.9977 -4.8875 1.4270 25 6 3.1759 -3.6310 1.3039 26 1 -0.3633 -0.0741 1.0251 27 1 -0.3632 -0.8507 -0.5766 28 1 -0.3633 0.9247 -0.4484 29 1 0.0146 3.0518 1.5352 30 1 0.7586 -2.5298 0.8903 31 1 0.7591 -2.5302 -0.8897 32 1 1.0821 -5.1490 0.8307 33 1 0.9163 -4.9228 -0.9297 34 1 3.0554 -5.9761 -1.3374 35 1 2.1316 -7.0449 -0.2591 36 1 4.3334 -8.0305 0.2621 37 1 6.6466 -5.9993 3.2131 38 1 5.2467 -4.0020 2.9235 39 1 3.8383 -2.7656 1.3177 40 1 2.4865 -3.5686 2.1459 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186153715.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:52 Heat of formation + Delta-G solvation = -85.855514 kcal Electronic energy + Delta-G solvation = -22872.875200 eV Core-core repulsion = 19372.535960 eV Total energy + Delta-G solvation = -3500.339240 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.88391 -41.18573 -40.13146 -37.34634 -36.38720 -33.77650 -33.57645 -31.99417 -30.29125 -28.57346 -27.61245 -25.99653 -24.55261 -23.36508 -22.95105 -20.68206 -20.13215 -18.81947 -18.19555 -17.66493 -17.39661 -16.94279 -16.60142 -16.49761 -16.00053 -15.79721 -15.46840 -15.11475 -14.73130 -14.55431 -14.15887 -14.15139 -13.86418 -13.59582 -13.26287 -13.23254 -13.07806 -12.92323 -12.64253 -12.60892 -12.33048 -12.18283 -12.13156 -12.00282 -11.59486 -11.46968 -11.20059 -10.95918 -10.14701 -9.83142 -9.60328 -9.36777 -8.31230 -5.95509 0.18431 0.25563 1.37592 1.40748 1.52500 2.12407 2.29738 2.58198 3.11839 3.16104 3.25582 3.66430 3.70268 3.94884 3.96936 4.08644 4.19529 4.21079 4.33024 4.43262 4.58425 4.61477 4.68589 4.79332 4.85215 4.91146 4.96451 5.01869 5.08670 5.09631 5.14355 5.20130 5.23015 5.35622 5.41553 5.46689 5.52052 5.58564 5.72319 5.98182 6.15730 6.54413 7.22807 7.55695 8.12910 8.71657 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.028575 B = 0.003398 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.633632 B = 8238.489575 C = 8899.211072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.470 5.470 3 C -0.342 4.342 4 H 0.068 0.932 5 C -0.003 4.003 6 N -0.898 5.898 7 Si 0.985 3.015 8 H -0.266 1.266 9 H -0.275 1.275 10 H -0.278 1.278 11 C 0.438 3.562 12 O -0.626 6.626 13 C -0.114 4.114 14 C -0.062 4.062 15 H 0.057 0.943 16 C -0.108 4.108 17 C -0.078 4.078 18 C -0.055 4.055 19 C -0.154 4.154 20 C 0.074 3.926 21 F -0.147 7.147 22 C -0.159 4.159 23 C -0.104 4.104 24 C -0.086 4.086 25 C -0.077 4.077 26 H 0.041 0.959 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.272 0.728 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.155 0.845 37 H 0.148 0.852 38 H 0.132 0.868 39 H 0.062 0.938 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.377 -17.160 -0.800 17.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.190 5.190 3 C -0.471 4.471 4 H 0.086 0.914 5 C -0.205 4.205 6 N -0.537 5.537 7 Si 0.809 3.191 8 H -0.191 1.191 9 H -0.200 1.200 10 H -0.203 1.203 11 C 0.228 3.772 12 O -0.513 6.513 13 C -0.154 4.154 14 C -0.081 4.081 15 H 0.075 0.925 16 C -0.145 4.145 17 C -0.114 4.114 18 C -0.055 4.055 19 C -0.172 4.172 20 C 0.055 3.945 21 F -0.126 7.126 22 C -0.177 4.177 23 C -0.122 4.122 24 C -0.087 4.087 25 C -0.114 4.114 26 H 0.059 0.941 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.124 0.876 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.122 0.878 36 H 0.173 0.827 37 H 0.166 0.834 38 H 0.150 0.850 39 H 0.080 0.920 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.071 -17.050 -0.696 17.064 hybrid contribution 0.773 1.207 0.303 1.465 sum 0.844 -15.843 -0.394 15.870 Atomic orbital electron populations 1.21410 0.79568 1.00717 1.00448 1.43903 1.06669 1.04812 1.63603 1.19579 1.00263 0.86482 1.40749 0.91412 1.26027 0.97113 1.02780 0.94547 1.70060 1.19804 1.30532 1.33309 0.85059 0.78253 0.77456 0.78337 1.19078 1.19971 1.20270 1.21267 0.88128 0.86483 0.81324 1.90449 1.16119 1.87990 1.56757 1.21623 0.98607 0.90517 1.04668 1.20787 0.95972 0.94082 0.97231 0.92469 1.21623 0.97433 0.91819 1.03632 1.20569 0.93388 1.00690 0.96796 1.19761 0.97260 0.91511 0.96979 1.21330 0.95573 1.00486 0.99824 1.17751 0.93089 0.83730 0.99952 1.91464 1.74529 1.51670 1.94948 1.21205 1.02323 0.92342 1.01872 1.21225 0.94595 0.98254 0.98138 1.19937 0.96732 0.95471 0.96511 1.20545 0.98310 0.94306 0.98272 0.94077 0.91154 0.92834 0.91872 0.88755 0.87649 0.90725 0.88897 0.89617 0.87794 0.82698 0.83427 0.85047 0.91969 0.90956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.22 8.44 127.77 1.08 6.30 16 2 N -0.47 -23.98 3.01 -658.86 -1.98 -25.97 16 3 C -0.34 -19.55 9.24 84.04 0.78 -18.78 16 4 H 0.07 4.15 7.45 -2.91 -0.02 4.13 16 5 C 0.00 -0.17 5.04 84.93 0.43 0.25 16 6 N -0.90 -47.78 10.83 21.66 0.23 -47.54 16 7 Si 0.98 42.83 29.57 68.60 2.03 44.86 16 8 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 9 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 11 C 0.44 20.62 7.38 87.66 0.65 21.27 16 12 O -0.63 -34.18 13.73 -3.08 -0.04 -34.23 16 13 C -0.11 -3.71 3.78 29.85 0.11 -3.59 16 14 C -0.06 -1.81 1.85 -10.78 -0.02 -1.83 16 15 H 0.06 1.92 7.93 -2.39 -0.02 1.91 16 16 C -0.11 -2.12 5.28 30.61 0.16 -1.95 16 17 C -0.08 -1.40 5.67 29.74 0.17 -1.23 16 18 C -0.05 -1.29 5.74 -19.86 -0.11 -1.41 16 19 C -0.15 -3.35 9.59 22.40 0.21 -3.14 16 20 C 0.07 1.79 7.30 22.31 0.16 1.95 16 21 F -0.15 -3.58 17.27 44.97 0.78 -2.81 16 22 C -0.16 -3.85 10.03 22.25 0.22 -3.62 16 23 C -0.10 -2.81 9.60 22.35 0.21 -2.59 16 24 C -0.09 -2.43 5.74 -19.85 -0.11 -2.55 16 25 C -0.08 -2.49 4.62 29.74 0.14 -2.35 16 26 H 0.04 1.81 7.83 -2.38 -0.02 1.79 16 27 H 0.07 2.33 6.61 -2.39 -0.02 2.31 16 28 H 0.05 2.47 6.80 -2.39 -0.02 2.46 16 29 H 0.27 13.57 8.31 -92.71 -0.77 12.80 16 30 H 0.09 2.79 8.09 -2.39 -0.02 2.78 16 31 H 0.11 2.84 7.41 -2.39 -0.02 2.82 16 32 H 0.07 1.38 8.10 -2.38 -0.02 1.36 16 33 H 0.09 1.44 8.13 -2.38 -0.02 1.42 16 34 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.10 1.32 8.13 -2.38 -0.02 1.30 16 36 H 0.16 2.53 8.05 -2.91 -0.02 2.51 16 37 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 38 H 0.13 3.42 8.05 -2.91 -0.02 3.40 16 39 H 0.06 2.53 6.14 -2.39 -0.01 2.52 16 40 H 0.07 2.22 8.10 -2.39 -0.02 2.20 16 Total: -1.00 -67.64 326.36 6.13 -61.51 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 1.04 Total: 17.44 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: 4.08 Total: -13.27 kcal Atomic # 7 Polarization: -71.76 SS G_CDS: -1.75 Total: -73.51 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -0.04 Total: -34.23 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.78 Total: -2.81 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -67.64 6.13 -61.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186153715.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.344 kcal (2) G-P(sol) polarization free energy of solvation -67.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds