Wall clock time and date at job start Tue Mar 31 2020 06:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37100 * 119.99561 * 2 1 4 4 H 1.08005 * 119.99939 * 201.70674 * 3 2 1 5 5 C 1.38948 * 120.00357 * 21.70398 * 3 2 1 6 6 N 1.31408 * 120.00014 * 11.34456 * 5 3 2 7 7 Si 1.86803 * 119.99774 * 191.34401 * 5 3 2 8 8 H 1.48492 * 109.47346 * 85.07330 * 7 5 3 9 9 H 1.48500 * 109.46772 * 205.06993 * 7 5 3 10 10 H 1.48503 * 109.47371 * 325.07089 * 7 5 3 11 11 C 1.34776 * 120.00131 * 179.97438 * 2 1 3 12 12 O 1.21287 * 119.99999 * 180.02562 * 11 2 1 13 13 C 1.50698 * 119.99916 * 359.72706 * 11 2 1 14 14 C 1.52995 * 109.47178 * 180.27910 * 13 11 2 15 15 H 1.09004 * 109.68239 * 54.99558 * 14 13 11 16 16 C 1.53317 * 109.68359 * 175.51648 * 14 13 11 17 17 C 1.52717 * 108.39773 * 189.55222 * 16 14 13 18 18 C 1.50629 * 110.61466 * 308.94755 * 17 16 14 19 19 C 1.38880 * 117.72631 * 197.39614 * 18 17 16 20 20 C 1.38157 * 120.52801 * 180.56955 * 19 18 17 21 21 F 1.35095 * 120.14224 * 180.02562 * 20 19 18 22 22 C 1.38487 * 119.71364 * 0.02562 * 20 19 18 23 23 C 1.37884 * 119.74825 * 359.89143 * 22 20 19 24 24 C 1.37678 * 122.56603 * 17.76662 * 18 17 16 25 25 C 1.50640 * 122.55043 * 359.25380 * 24 18 17 26 26 H 1.08999 * 109.47372 * 272.18226 * 1 2 3 27 27 H 1.08997 * 109.47175 * 32.18068 * 1 2 3 28 28 H 1.08999 * 109.46932 * 152.17926 * 1 2 3 29 29 H 0.97005 * 120.00051 * 180.02562 * 6 5 3 30 30 H 1.09006 * 109.46806 * 300.27575 * 13 11 2 31 31 H 1.09000 * 109.47287 * 60.27256 * 13 11 2 32 32 H 1.09004 * 109.68661 * 309.31763 * 16 14 13 33 33 H 1.09006 * 109.68621 * 69.86940 * 16 14 13 34 34 H 1.09001 * 109.25718 * 188.63972 * 17 16 14 35 35 H 1.08997 * 109.18606 * 69.21188 * 17 16 14 36 36 H 1.08000 * 119.73744 * 0.59637 * 19 18 17 37 37 H 1.08003 * 120.12695 * 179.86095 * 22 20 19 38 38 H 1.07995 * 119.70945 * 180.02562 * 23 22 20 39 39 H 1.09001 * 109.25466 * 257.50231 * 25 24 18 40 40 H 1.09005 * 109.21934 * 138.06027 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1731 1.2206 -0.3459 5 6 1.5296 2.3480 0.4450 6 7 0.3757 2.2778 1.0697 7 14 2.3353 4.0083 0.1551 8 1 1.9736 4.5047 -1.1968 9 1 1.8624 4.9735 1.1797 10 1 3.8104 3.8664 0.2521 11 6 2.1390 -1.1672 0.0005 12 8 3.3518 -1.1671 0.0010 13 6 1.3855 -2.4723 0.0073 14 6 2.3797 -3.6351 0.0135 15 1 3.0657 -3.5271 0.8537 16 6 1.6214 -4.9622 0.1333 17 6 2.6364 -6.0770 0.3769 18 6 3.7403 -6.0220 -0.6465 19 6 4.5310 -7.1527 -0.8054 20 6 5.5672 -7.1616 -1.7192 21 9 6.3311 -8.2659 -1.8677 22 6 5.8193 -6.0338 -2.4822 23 6 5.0331 -4.9119 -2.3255 24 6 3.9889 -4.9030 -1.4090 25 6 3.1670 -3.6457 -1.2952 26 1 -0.3634 0.0391 1.0269 27 1 -0.3633 0.8698 -0.5473 28 1 -0.3633 -0.9089 -0.4796 29 1 -0.0580 3.0882 1.3801 30 1 0.7588 -2.5253 0.8976 31 1 0.7588 -2.5347 -0.8823 32 1 0.9230 -4.9120 0.9687 33 1 1.0763 -5.1583 -0.7901 34 1 2.1333 -7.0418 0.3114 35 1 3.0635 -5.9613 1.3730 36 1 4.3341 -8.0321 -0.2102 37 1 6.6290 -6.0327 -3.1969 38 1 5.2300 -4.0329 -2.9211 39 1 2.4719 -3.5935 -2.1332 40 1 3.8293 -2.7803 -1.3232 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186153716.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:55 Heat of formation + Delta-G solvation = -69.775038 kcal Electronic energy + Delta-G solvation = -22849.225173 eV Core-core repulsion = 19349.583235 eV Total energy + Delta-G solvation = -3499.641938 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.89614 -40.06935 -38.47901 -36.10242 -34.58238 -32.67649 -31.69102 -30.78600 -29.28210 -27.03989 -25.96764 -24.23098 -23.51230 -22.37917 -21.76687 -19.43027 -18.59201 -17.19922 -16.84753 -16.39040 -15.91863 -15.82073 -15.59801 -14.74098 -14.47549 -14.31322 -14.20383 -13.96159 -13.53266 -13.31746 -13.18385 -12.87101 -12.50185 -12.09936 -11.91595 -11.86253 -11.53964 -11.31404 -11.20928 -11.09032 -10.93254 -10.89404 -10.47330 -10.41546 -10.34586 -10.15240 -10.07864 -9.00844 -8.89223 -8.40764 -8.24427 -7.66227 -6.29669 -3.85878 1.19329 1.20844 3.16956 3.25098 3.30154 3.56823 3.92955 4.14440 4.21859 4.59475 4.70995 4.81504 4.90145 5.08208 5.13065 5.17489 5.19169 5.27001 5.43500 5.61233 5.66917 5.73467 5.86122 5.94656 6.00451 6.03315 6.05600 6.07502 6.13966 6.18535 6.28209 6.36734 6.45472 6.62472 6.74709 6.79391 6.90470 6.97387 7.24613 7.57606 8.15154 8.50830 9.21477 9.46271 10.02089 10.73806 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.030135 B = 0.003347 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.921868 B = 8364.325854 C = 9070.153325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.450 5.450 3 C -0.305 4.305 4 H 0.098 0.902 5 C 0.029 3.971 6 N -0.885 5.885 7 Si 0.926 3.074 8 H -0.278 1.278 9 H -0.284 1.284 10 H -0.270 1.270 11 C 0.445 3.555 12 O -0.589 6.589 13 C -0.125 4.125 14 C -0.065 4.065 15 H 0.080 0.920 16 C -0.117 4.117 17 C -0.079 4.079 18 C -0.052 4.052 19 C -0.157 4.157 20 C 0.083 3.917 21 F -0.146 7.146 22 C -0.157 4.157 23 C -0.091 4.091 24 C -0.068 4.068 25 C -0.082 4.082 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.026 0.974 29 H 0.266 0.734 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.070 0.930 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.047 -15.501 -4.093 16.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.168 5.168 3 C -0.433 4.433 4 H 0.116 0.884 5 C -0.174 4.174 6 N -0.525 5.525 7 Si 0.753 3.247 8 H -0.204 1.204 9 H -0.210 1.210 10 H -0.195 1.195 11 C 0.234 3.766 12 O -0.474 6.474 13 C -0.166 4.166 14 C -0.084 4.084 15 H 0.098 0.902 16 C -0.154 4.154 17 C -0.116 4.116 18 C -0.052 4.052 19 C -0.175 4.175 20 C 0.064 3.936 21 F -0.125 7.125 22 C -0.176 4.176 23 C -0.109 4.109 24 C -0.068 4.068 25 C -0.119 4.119 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.044 0.956 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.089 0.911 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.516 -15.374 -4.011 15.961 hybrid contribution 0.313 0.690 -0.095 0.764 sum 1.829 -14.684 -4.106 15.357 Atomic orbital electron populations 1.21497 0.81226 0.98730 1.01620 1.43631 1.05500 1.04916 1.62780 1.19663 0.99053 0.83876 1.40728 0.88396 1.25322 0.96508 1.00002 0.95553 1.70000 1.16860 1.29076 1.36593 0.85950 0.79610 0.81269 0.77919 1.20376 1.21006 1.19455 1.20081 0.88113 0.84882 0.83561 1.90467 1.13985 1.87085 1.55907 1.21606 0.98478 0.93781 1.02690 1.20824 0.96474 0.92479 0.98637 0.90177 1.21663 0.97340 0.94317 1.02127 1.20481 0.94227 0.99624 0.97277 1.19507 0.96556 0.92116 0.97010 1.21084 0.96434 0.99907 1.00123 1.17555 0.92754 0.83771 0.99484 1.91466 1.74409 1.51589 1.95034 1.21036 1.02152 0.92842 1.01527 1.21117 0.94253 0.97660 0.97886 1.19942 0.96226 0.95467 0.95134 1.20721 0.98687 0.94940 0.97543 0.92550 0.91323 0.95555 0.92333 0.90262 0.90612 0.91171 0.91678 0.90766 0.90249 0.85233 0.85084 0.84982 0.91146 0.87723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.47 8.52 59.85 0.51 2.98 16 2 N -0.45 -11.27 3.02 -122.19 -0.37 -11.64 16 3 C -0.31 -8.42 9.31 -14.93 -0.14 -8.56 16 4 H 0.10 2.83 7.39 -52.48 -0.39 2.44 16 5 C 0.03 0.76 5.12 -17.47 -0.09 0.67 16 6 N -0.89 -23.45 10.56 55.50 0.59 -22.87 16 7 Si 0.93 20.70 29.57 -169.99 -5.03 15.67 16 8 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 11 C 0.45 10.30 7.38 -10.99 -0.08 10.21 16 12 O -0.59 -15.32 13.73 5.55 0.08 -15.24 16 13 C -0.13 -2.12 3.70 -27.89 -0.10 -2.23 16 14 C -0.07 -0.99 1.84 -90.60 -0.17 -1.16 16 15 H 0.08 1.38 7.92 -51.93 -0.41 0.97 16 16 C -0.12 -1.35 5.28 -26.71 -0.14 -1.49 16 17 C -0.08 -0.85 5.67 -28.06 -0.16 -1.01 16 18 C -0.05 -0.66 5.74 -104.62 -0.60 -1.26 16 19 C -0.16 -1.89 9.59 -39.37 -0.38 -2.26 16 20 C 0.08 1.06 7.30 -39.52 -0.29 0.77 16 21 F -0.15 -1.88 17.27 2.25 0.04 -1.85 16 22 C -0.16 -1.91 10.03 -39.62 -0.40 -2.30 16 23 C -0.09 -1.18 9.60 -39.45 -0.38 -1.55 16 24 C -0.07 -0.94 5.74 -104.60 -0.60 -1.54 16 25 C -0.08 -1.26 4.63 -28.05 -0.13 -1.39 16 26 H 0.06 1.28 7.56 -51.93 -0.39 0.89 16 27 H 0.07 1.59 7.00 -51.93 -0.36 1.23 16 28 H 0.03 0.46 6.37 -51.93 -0.33 0.13 16 29 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 30 H 0.08 1.26 8.10 -51.93 -0.42 0.84 16 31 H 0.08 1.15 7.38 -51.93 -0.38 0.77 16 32 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 33 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 34 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.13 1.30 8.05 -52.49 -0.42 0.87 16 37 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 38 H 0.13 1.54 8.05 -52.49 -0.42 1.11 16 39 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 40 H 0.10 1.92 6.18 -51.93 -0.32 1.60 16 LS Contribution 325.88 15.07 4.91 4.91 Total: -1.00 -29.97 325.88 -8.45 -38.42 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -5.52 Total: 2.70 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -3.14 Total: -10.11 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.22 Total: -34.50 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: 0.08 Total: -15.24 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.97 -8.45 -38.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186153716.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.359 kcal (2) G-P(sol) polarization free energy of solvation -29.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds