Wall clock time and date at job start Tue Mar 31 2020 06:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37100 * 119.99561 * 2 1 4 4 H 1.08005 * 119.99939 * 201.70674 * 3 2 1 5 5 C 1.38948 * 120.00357 * 21.70398 * 3 2 1 6 6 N 1.31408 * 120.00014 * 11.34456 * 5 3 2 7 7 Si 1.86803 * 119.99774 * 191.34401 * 5 3 2 8 8 H 1.48492 * 109.47346 * 85.07330 * 7 5 3 9 9 H 1.48500 * 109.46772 * 205.06993 * 7 5 3 10 10 H 1.48503 * 109.47371 * 325.07089 * 7 5 3 11 11 C 1.34776 * 120.00131 * 179.97438 * 2 1 3 12 12 O 1.21287 * 119.99999 * 180.02562 * 11 2 1 13 13 C 1.50698 * 119.99916 * 359.72706 * 11 2 1 14 14 C 1.52995 * 109.47178 * 180.27910 * 13 11 2 15 15 H 1.09004 * 109.68239 * 54.99558 * 14 13 11 16 16 C 1.53317 * 109.68359 * 175.51648 * 14 13 11 17 17 C 1.52717 * 108.39773 * 189.55222 * 16 14 13 18 18 C 1.50629 * 110.61466 * 308.94755 * 17 16 14 19 19 C 1.38880 * 117.72631 * 197.39614 * 18 17 16 20 20 C 1.38157 * 120.52801 * 180.56955 * 19 18 17 21 21 F 1.35095 * 120.14224 * 180.02562 * 20 19 18 22 22 C 1.38487 * 119.71364 * 0.02562 * 20 19 18 23 23 C 1.37884 * 119.74825 * 359.89143 * 22 20 19 24 24 C 1.37678 * 122.56603 * 17.76662 * 18 17 16 25 25 C 1.50640 * 122.55043 * 359.25380 * 24 18 17 26 26 H 1.08999 * 109.47372 * 272.18226 * 1 2 3 27 27 H 1.08997 * 109.47175 * 32.18068 * 1 2 3 28 28 H 1.08999 * 109.46932 * 152.17926 * 1 2 3 29 29 H 0.97005 * 120.00051 * 180.02562 * 6 5 3 30 30 H 1.09006 * 109.46806 * 300.27575 * 13 11 2 31 31 H 1.09000 * 109.47287 * 60.27256 * 13 11 2 32 32 H 1.09004 * 109.68661 * 309.31763 * 16 14 13 33 33 H 1.09006 * 109.68621 * 69.86940 * 16 14 13 34 34 H 1.09001 * 109.25718 * 188.63972 * 17 16 14 35 35 H 1.08997 * 109.18606 * 69.21188 * 17 16 14 36 36 H 1.08000 * 119.73744 * 0.59637 * 19 18 17 37 37 H 1.08003 * 120.12695 * 179.86095 * 22 20 19 38 38 H 1.07995 * 119.70945 * 180.02562 * 23 22 20 39 39 H 1.09001 * 109.25466 * 257.50231 * 25 24 18 40 40 H 1.09005 * 109.21934 * 138.06027 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1731 1.2206 -0.3459 5 6 1.5296 2.3480 0.4450 6 7 0.3757 2.2778 1.0697 7 14 2.3353 4.0083 0.1551 8 1 1.9736 4.5047 -1.1968 9 1 1.8624 4.9735 1.1797 10 1 3.8104 3.8664 0.2521 11 6 2.1390 -1.1672 0.0005 12 8 3.3518 -1.1671 0.0010 13 6 1.3855 -2.4723 0.0073 14 6 2.3797 -3.6351 0.0135 15 1 3.0657 -3.5271 0.8537 16 6 1.6214 -4.9622 0.1333 17 6 2.6364 -6.0770 0.3769 18 6 3.7403 -6.0220 -0.6465 19 6 4.5310 -7.1527 -0.8054 20 6 5.5672 -7.1616 -1.7192 21 9 6.3311 -8.2659 -1.8677 22 6 5.8193 -6.0338 -2.4822 23 6 5.0331 -4.9119 -2.3255 24 6 3.9889 -4.9030 -1.4090 25 6 3.1670 -3.6457 -1.2952 26 1 -0.3634 0.0391 1.0269 27 1 -0.3633 0.8698 -0.5473 28 1 -0.3633 -0.9089 -0.4796 29 1 -0.0580 3.0882 1.3801 30 1 0.7588 -2.5253 0.8976 31 1 0.7588 -2.5347 -0.8823 32 1 0.9230 -4.9120 0.9687 33 1 1.0763 -5.1583 -0.7901 34 1 2.1333 -7.0418 0.3114 35 1 3.0635 -5.9613 1.3730 36 1 4.3341 -8.0321 -0.2102 37 1 6.6290 -6.0327 -3.1969 38 1 5.2300 -4.0329 -2.9211 39 1 2.4719 -3.5935 -2.1332 40 1 3.8293 -2.7803 -1.3232 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186153716.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:54 Heat of formation + Delta-G solvation = -84.765490 kcal Electronic energy + Delta-G solvation = -22849.875208 eV Core-core repulsion = 19349.583235 eV Total energy + Delta-G solvation = -3500.291973 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.88180 -41.18432 -40.13515 -37.34737 -36.39376 -33.77705 -33.56551 -31.99128 -30.29245 -28.58568 -27.60143 -25.98339 -24.55203 -23.36268 -22.95231 -20.67763 -20.13447 -18.82738 -18.19590 -17.65846 -17.39326 -16.94181 -16.60304 -16.49916 -15.93056 -15.84226 -15.46267 -15.11824 -14.72209 -14.56603 -14.15340 -14.13051 -13.90142 -13.49723 -13.35173 -13.27645 -13.04419 -12.88500 -12.63414 -12.60940 -12.29723 -12.16075 -12.13840 -12.03397 -11.58668 -11.43640 -11.21001 -10.96963 -10.16091 -9.82797 -9.63617 -9.36034 -8.29373 -5.93798 0.19007 0.26087 1.37985 1.40677 1.52064 2.12139 2.29516 2.58740 3.13136 3.16060 3.26108 3.66603 3.70557 3.95130 3.98333 4.07319 4.19953 4.21396 4.34601 4.41482 4.55885 4.65323 4.66914 4.79505 4.87237 4.89932 4.97512 5.02473 5.09221 5.11243 5.14175 5.20365 5.23181 5.35984 5.44850 5.47098 5.52245 5.58543 5.72437 5.98611 6.14325 6.54114 7.22840 7.56325 8.12704 8.71804 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.030135 B = 0.003347 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.921868 B = 8364.325854 C = 9070.153325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.471 5.471 3 C -0.342 4.342 4 H 0.070 0.930 5 C -0.005 4.005 6 N -0.899 5.899 7 Si 0.986 3.014 8 H -0.267 1.267 9 H -0.274 1.274 10 H -0.278 1.278 11 C 0.437 3.563 12 O -0.627 6.627 13 C -0.114 4.114 14 C -0.063 4.063 15 H 0.052 0.948 16 C -0.108 4.108 17 C -0.078 4.078 18 C -0.055 4.055 19 C -0.155 4.155 20 C 0.073 3.927 21 F -0.148 7.148 22 C -0.159 4.159 23 C -0.102 4.102 24 C -0.086 4.086 25 C -0.076 4.076 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.271 0.729 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.154 0.846 37 H 0.149 0.851 38 H 0.135 0.865 39 H 0.078 0.922 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.231 -17.152 -4.074 17.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.190 5.190 3 C -0.470 4.470 4 H 0.088 0.912 5 C -0.206 4.206 6 N -0.538 5.538 7 Si 0.810 3.190 8 H -0.192 1.192 9 H -0.199 1.199 10 H -0.203 1.203 11 C 0.227 3.773 12 O -0.514 6.514 13 C -0.154 4.154 14 C -0.082 4.082 15 H 0.070 0.930 16 C -0.145 4.145 17 C -0.115 4.115 18 C -0.056 4.056 19 C -0.173 4.173 20 C 0.054 3.946 21 F -0.127 7.127 22 C -0.177 4.177 23 C -0.120 4.120 24 C -0.087 4.087 25 C -0.113 4.113 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.122 0.878 35 H 0.101 0.899 36 H 0.171 0.829 37 H 0.166 0.834 38 H 0.153 0.847 39 H 0.097 0.903 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.211 -17.039 -3.992 17.501 hybrid contribution 0.774 1.170 -0.102 1.407 sum 0.986 -15.869 -4.095 16.418 Atomic orbital electron populations 1.21430 0.79432 1.00101 1.01022 1.43923 1.06751 1.04844 1.63491 1.19603 0.98698 0.86028 1.42713 0.91236 1.26023 0.97054 1.02655 0.94842 1.70075 1.17361 1.30062 1.36330 0.85059 0.78128 0.77359 0.78466 1.19171 1.19864 1.20296 1.21229 0.88125 0.86430 0.81525 1.90448 1.16098 1.87972 1.56896 1.21615 0.98595 0.90491 1.04664 1.20786 0.96009 0.94039 0.97330 0.92957 1.21619 0.97386 0.91870 1.03638 1.20558 0.93570 1.00736 0.96646 1.19745 0.97222 0.91664 0.96932 1.21323 0.95717 1.00456 0.99831 1.17756 0.93108 0.83817 0.99895 1.91462 1.74502 1.51616 1.95078 1.21216 1.02358 0.92409 1.01755 1.21233 0.94476 0.98209 0.98127 1.19948 0.96822 0.95478 0.96416 1.20545 0.98358 0.94247 0.98138 0.93781 0.93237 0.91052 0.91890 0.88405 0.87990 0.89268 0.90351 0.87823 0.89938 0.82875 0.83369 0.84746 0.90338 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.31 8.52 127.77 1.09 6.40 16 2 N -0.47 -24.01 3.02 -658.89 -1.99 -26.00 16 3 C -0.34 -19.54 9.31 84.04 0.78 -18.75 16 4 H 0.07 4.25 7.39 -2.91 -0.02 4.23 16 5 C 0.00 -0.24 5.12 84.93 0.43 0.19 16 6 N -0.90 -47.73 10.56 21.66 0.23 -47.50 16 7 Si 0.99 42.88 29.57 68.60 2.03 44.90 16 8 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 9 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 11 C 0.44 20.53 7.38 87.66 0.65 21.18 16 12 O -0.63 -34.14 13.73 -3.05 -0.04 -34.18 16 13 C -0.11 -3.68 3.70 29.85 0.11 -3.57 16 14 C -0.06 -1.83 1.84 -10.78 -0.02 -1.85 16 15 H 0.05 1.81 7.92 -2.39 -0.02 1.80 16 16 C -0.11 -2.13 5.28 30.61 0.16 -1.97 16 17 C -0.08 -1.44 5.67 29.73 0.17 -1.27 16 18 C -0.06 -1.29 5.74 -19.87 -0.11 -1.41 16 19 C -0.15 -3.36 9.59 22.40 0.21 -3.15 16 20 C 0.07 1.75 7.30 22.31 0.16 1.91 16 21 F -0.15 -3.56 17.27 44.97 0.78 -2.79 16 22 C -0.16 -3.72 10.03 22.25 0.22 -3.50 16 23 C -0.10 -2.64 9.60 22.35 0.21 -2.43 16 24 C -0.09 -2.36 5.74 -19.85 -0.11 -2.47 16 25 C -0.08 -2.33 4.63 29.74 0.14 -2.19 16 26 H 0.04 1.98 7.56 -2.39 -0.02 1.96 16 27 H 0.05 2.29 7.00 -2.39 -0.02 2.27 16 28 H 0.07 2.36 6.37 -2.39 -0.02 2.35 16 29 H 0.27 13.54 8.31 -92.70 -0.77 12.77 16 30 H 0.10 2.84 8.10 -2.38 -0.02 2.82 16 31 H 0.10 2.79 7.38 -2.39 -0.02 2.77 16 32 H 0.09 1.47 8.13 -2.38 -0.02 1.45 16 33 H 0.08 1.39 8.10 -2.38 -0.02 1.37 16 34 H 0.10 1.35 8.13 -2.39 -0.02 1.33 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.15 2.54 8.05 -2.91 -0.02 2.52 16 37 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 38 H 0.13 3.26 8.05 -2.91 -0.02 3.24 16 39 H 0.08 2.19 8.09 -2.39 -0.02 2.17 16 40 H 0.06 2.47 6.18 -2.38 -0.01 2.46 16 Total: -1.00 -67.44 325.88 6.14 -61.30 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 1.04 Total: 17.16 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: 4.10 Total: -12.89 kcal Atomic # 7 Polarization: -71.73 SS G_CDS: -1.76 Total: -73.49 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -0.04 Total: -34.18 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.78 Total: -2.79 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -67.44 6.14 -61.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186153716.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.469 kcal (2) G-P(sol) polarization free energy of solvation -67.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds