Wall clock time and date at job start Tue Mar 31 2020 06:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35276 * 117.00103 * 2 1 4 4 N 1.32778 * 120.61442 * 0.26126 * 3 2 1 5 5 C 1.31722 * 120.87322 * 180.30965 * 4 3 2 6 6 N 1.31939 * 122.19860 * 359.70513 * 5 4 3 7 7 C 1.32190 * 121.13971 * 359.97438 * 6 5 4 8 8 C 1.39813 * 118.97708 * 0.02562 * 7 6 5 9 9 C 1.47530 * 120.97516 * 180.02562 * 8 7 6 10 10 O 1.21593 * 119.99676 * 179.97438 * 9 8 7 11 11 N 1.34773 * 120.00374 * 0.26797 * 9 8 7 12 12 C 1.46500 * 120.00431 * 179.72702 * 11 9 8 13 13 H 1.09004 * 109.41182 * 35.14060 * 12 11 9 14 14 C 1.52956 * 109.41580 * 155.00124 * 12 11 9 15 15 C 1.53229 * 109.40392 * 183.70339 * 14 12 11 16 16 C 1.51274 * 108.53988 * 305.37538 * 15 14 12 17 17 C 1.37875 * 120.84927 * 231.32685 * 16 15 14 18 18 N 1.31513 * 120.00242 * 359.97438 * 17 16 15 19 19 Si 1.86798 * 119.99820 * 179.97438 * 17 16 15 20 20 H 1.48498 * 109.47324 * 90.00077 * 19 17 16 21 21 H 1.48503 * 109.47115 * 209.99637 * 19 17 16 22 22 H 1.48498 * 109.47430 * 329.99819 * 19 17 16 23 23 C 1.51269 * 118.29898 * 51.34224 * 16 15 14 24 24 C 1.52959 * 109.41178 * 275.35774 * 12 11 9 25 25 H 1.09002 * 109.47072 * 299.99651 * 1 2 3 26 26 H 1.09001 * 109.46960 * 60.00139 * 1 2 3 27 27 H 1.09001 * 109.46577 * 179.97438 * 1 2 3 28 28 H 1.07999 * 118.90558 * 179.67988 * 5 4 3 29 29 H 1.08000 * 120.51338 * 180.02562 * 7 6 5 30 30 H 0.97000 * 120.00112 * 359.73140 * 11 9 8 31 31 H 1.09000 * 109.48280 * 303.68611 * 14 12 11 32 32 H 1.08999 * 109.48009 * 63.73189 * 14 12 11 33 33 H 1.09000 * 109.62612 * 65.08757 * 15 14 12 34 34 H 1.08999 * 109.63054 * 185.46736 * 15 14 12 35 35 H 0.97001 * 120.00496 * 180.02562 * 18 17 16 36 36 H 1.08999 * 109.62530 * 68.36999 * 23 16 15 37 37 H 1.08994 * 109.62620 * 188.74458 * 23 16 15 38 38 H 1.09000 * 109.48366 * 296.27094 * 24 12 11 39 39 H 1.09003 * 109.48746 * 56.31033 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2053 0.0000 4 7 1.3320 2.3266 0.0052 5 6 1.9247 3.5029 -0.0009 6 7 3.2381 3.6284 -0.0066 7 6 4.0262 2.5671 -0.0059 8 6 3.4481 1.2941 0.0004 9 6 4.2858 0.0798 0.0020 10 8 3.7642 -1.0186 0.0080 11 7 5.6292 0.1877 0.0027 12 6 6.4611 -1.0181 0.0103 13 1 5.9754 -1.7970 -0.5776 14 6 7.8266 -0.6977 -0.5997 15 6 8.6632 -1.9791 -0.6766 16 6 8.7262 -2.5959 0.7032 17 6 9.9347 -2.9480 1.2658 18 7 11.0521 -2.7492 0.6014 19 14 9.9849 -3.7075 2.9717 20 1 9.8893 -5.1851 2.8588 21 1 11.2610 -3.3436 3.6382 22 1 8.8443 -3.1976 3.7743 23 6 7.4293 -2.8169 1.4498 24 6 6.6374 -1.5050 1.4496 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.3152 4.3945 -0.0016 29 1 5.1001 2.6816 -0.0102 30 1 6.0453 1.0639 -0.0017 31 1 7.6907 -0.2915 -1.6021 32 1 8.3401 0.0348 0.0231 33 1 8.1973 -2.6795 -1.3698 34 1 9.6696 -1.7394 -1.0198 35 1 11.9024 -2.9973 0.9970 36 1 6.8491 -3.5948 0.9535 37 1 7.6438 -3.1182 2.4751 38 1 7.1790 -0.7534 2.0239 39 1 5.6587 -1.6711 1.8998 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196544197.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:44 Heat of formation + Delta-G solvation = -32.680444 kcal Electronic energy + Delta-G solvation = -23118.735342 eV Core-core repulsion = 19640.621907 eV Total energy + Delta-G solvation = -3478.113434 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.58248 -39.27433 -38.72984 -36.70828 -34.01218 -33.42776 -32.36168 -31.29129 -29.67668 -27.89418 -27.26623 -25.30969 -23.97154 -22.36140 -21.52738 -20.43863 -19.62914 -19.05654 -18.22777 -17.51307 -16.51706 -15.98675 -15.74902 -15.28196 -14.86940 -14.73745 -14.44954 -14.26373 -14.08546 -13.61021 -13.15390 -12.74669 -12.34130 -12.31248 -12.10835 -11.94699 -11.67910 -11.60211 -11.02122 -10.85512 -10.73889 -10.66626 -10.18839 -10.01568 -9.82893 -9.63867 -9.51637 -9.38239 -9.01004 -8.86351 -8.49792 -8.31778 -6.11140 -4.01936 0.25960 0.82283 2.62112 2.94056 3.27474 3.31823 3.36202 3.37473 3.65313 3.70881 3.78779 4.38259 4.42294 4.59317 4.96910 5.01772 5.03155 5.08914 5.17211 5.34068 5.70702 5.79593 5.87288 6.18192 6.43609 6.45216 6.47150 6.69817 6.73689 6.83925 6.88776 6.95359 7.10854 7.22736 7.43351 7.63835 7.65052 7.69973 7.74064 7.87751 8.37144 8.46803 8.95164 9.53885 10.98323 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.027833 B = 0.003659 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.766410 B = 7649.956815 C = 8065.709150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.261 6.261 3 C 0.408 3.592 4 N -0.581 5.581 5 C 0.350 3.650 6 N -0.546 5.546 7 C 0.209 3.791 8 C -0.255 4.255 9 C 0.562 3.438 10 O -0.517 6.517 11 N -0.719 5.719 12 C 0.156 3.844 13 H 0.080 0.920 14 C -0.114 4.114 15 C 0.013 3.987 16 C -0.488 4.488 17 C 0.076 3.924 18 N -0.891 5.891 19 Si 0.886 3.114 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.264 1.264 23 C -0.019 4.019 24 C -0.113 4.113 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.103 0.897 28 H 0.204 0.796 29 H 0.179 0.821 30 H 0.391 0.609 31 H 0.036 0.964 32 H 0.055 0.945 33 H 0.006 0.994 34 H 0.061 0.939 35 H 0.264 0.736 36 H 0.019 0.981 37 H 0.035 0.965 38 H 0.051 0.949 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.728 11.905 -1.221 20.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.162 6.162 3 C 0.220 3.780 4 N -0.312 5.312 5 C 0.062 3.938 6 N -0.264 5.264 7 C 0.044 3.956 8 C -0.264 4.264 9 C 0.346 3.654 10 O -0.393 6.393 11 N -0.369 5.369 12 C 0.053 3.947 13 H 0.098 0.902 14 C -0.153 4.153 15 C -0.025 4.025 16 C -0.507 4.507 17 C -0.126 4.126 18 N -0.529 5.529 19 Si 0.715 3.285 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.189 1.189 23 C -0.057 4.057 24 C -0.152 4.152 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.121 0.879 28 H 0.220 0.780 29 H 0.196 0.804 30 H 0.225 0.775 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.025 0.975 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.038 0.962 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -17.383 11.496 -1.214 20.875 hybrid contribution 0.518 -0.444 0.967 1.184 sum -16.864 11.052 -0.246 20.165 Atomic orbital electron populations 1.23072 0.76919 1.03859 1.02517 1.86558 1.22822 1.22484 1.84311 1.20166 0.88467 0.85330 0.84019 1.68248 1.41358 0.99058 1.22533 1.24902 0.88712 0.93923 0.86225 1.68440 1.06161 1.33567 1.18262 1.23443 1.00911 0.85738 0.85491 1.21168 0.92534 0.97343 1.15365 1.17539 0.82446 0.87655 0.77783 1.90837 1.72839 1.26822 1.48781 1.46317 1.05258 1.10916 1.74426 1.21106 0.90491 0.84977 0.98081 0.90165 1.21942 0.94144 1.01774 0.97431 1.19335 0.96629 0.90717 0.95784 1.20052 0.89785 1.39884 1.00953 1.24835 0.95148 0.95128 0.97508 1.69830 0.97789 1.47292 1.37956 0.86684 0.77000 0.79841 0.84979 1.20390 1.21683 1.18949 1.19789 0.95751 0.92791 0.97377 1.21891 0.98372 1.00170 0.94728 0.91912 0.91936 0.87870 0.78006 0.80448 0.77518 0.94505 0.92612 0.97532 0.92072 0.92595 0.96248 0.94621 0.93023 0.94450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.41 101.05 1.05 1.35 16 2 O -0.26 -3.74 8.73 -38.67 -0.34 -4.08 16 3 C 0.41 5.55 7.54 -16.19 -0.12 5.43 16 4 N -0.58 -6.58 9.37 -14.32 -0.13 -6.72 16 5 C 0.35 3.27 12.27 -92.09 -1.13 2.14 16 6 N -0.55 -5.70 10.42 -14.29 -0.15 -5.85 16 7 C 0.21 2.23 10.81 -16.81 -0.18 2.05 16 8 C -0.26 -3.46 5.92 -104.56 -0.62 -4.08 16 9 C 0.56 9.31 7.74 -12.47 -0.10 9.21 16 10 O -0.52 -10.57 14.98 -15.86 -0.24 -10.81 16 11 N -0.72 -11.11 5.03 -54.89 -0.28 -11.39 16 12 C 0.16 2.99 2.35 -67.97 -0.16 2.83 16 13 H 0.08 1.71 7.58 -51.93 -0.39 1.32 16 14 C -0.11 -2.26 5.40 -26.64 -0.14 -2.40 16 15 C 0.01 0.32 5.96 -27.48 -0.16 0.16 16 16 C -0.49 -12.64 5.51 -98.92 -0.55 -13.18 16 17 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 18 N -0.89 -25.20 12.73 55.43 0.71 -24.49 16 19 Si 0.89 20.95 27.53 -169.99 -4.68 16.28 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.26 -6.07 6.11 56.52 0.35 -5.73 16 23 C -0.02 -0.45 5.59 -27.49 -0.15 -0.60 16 24 C -0.11 -2.35 5.50 -26.63 -0.15 -2.50 16 25 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 26 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 27 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.20 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.18 1.38 6.53 -52.49 -0.34 1.04 16 30 H 0.39 4.70 6.73 -40.82 -0.27 4.42 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 34 H 0.06 1.60 7.08 -51.93 -0.37 1.24 16 35 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.04 0.84 4.59 -51.93 -0.24 0.60 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 321.69 15.07 4.85 4.85 Total: -1.00 -32.13 321.69 -7.80 -39.93 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -5.03 Total: -0.08 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -2.51 Total: 2.37 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: 0.15 Total: -48.45 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.58 Total: -14.89 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.68 Total: 16.28 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.13 -7.80 -39.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196544197.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.251 kcal (2) G-P(sol) polarization free energy of solvation -32.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds