Wall clock time and date at job start Tue Mar 31 2020 06:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35276 * 117.00103 * 2 1 4 4 N 1.32778 * 120.61442 * 0.26126 * 3 2 1 5 5 C 1.31722 * 120.87322 * 180.30965 * 4 3 2 6 6 N 1.31939 * 122.19860 * 359.70513 * 5 4 3 7 7 C 1.32190 * 121.13971 * 359.97438 * 6 5 4 8 8 C 1.39813 * 118.97708 * 0.02562 * 7 6 5 9 9 C 1.47530 * 120.97516 * 180.02562 * 8 7 6 10 10 O 1.21593 * 119.99676 * 179.97438 * 9 8 7 11 11 N 1.34773 * 120.00374 * 0.26797 * 9 8 7 12 12 C 1.46500 * 120.00431 * 179.72702 * 11 9 8 13 13 H 1.09004 * 109.41182 * 35.14060 * 12 11 9 14 14 C 1.52956 * 109.41580 * 155.00124 * 12 11 9 15 15 C 1.53229 * 109.40392 * 183.70339 * 14 12 11 16 16 C 1.51274 * 108.53988 * 305.37538 * 15 14 12 17 17 C 1.37875 * 120.84927 * 231.32685 * 16 15 14 18 18 N 1.31513 * 120.00242 * 359.97438 * 17 16 15 19 19 Si 1.86798 * 119.99820 * 179.97438 * 17 16 15 20 20 H 1.48498 * 109.47324 * 90.00077 * 19 17 16 21 21 H 1.48503 * 109.47115 * 209.99637 * 19 17 16 22 22 H 1.48498 * 109.47430 * 329.99819 * 19 17 16 23 23 C 1.51269 * 118.29898 * 51.34224 * 16 15 14 24 24 C 1.52959 * 109.41178 * 275.35774 * 12 11 9 25 25 H 1.09002 * 109.47072 * 299.99651 * 1 2 3 26 26 H 1.09001 * 109.46960 * 60.00139 * 1 2 3 27 27 H 1.09001 * 109.46577 * 179.97438 * 1 2 3 28 28 H 1.07999 * 118.90558 * 179.67988 * 5 4 3 29 29 H 1.08000 * 120.51338 * 180.02562 * 7 6 5 30 30 H 0.97000 * 120.00112 * 359.73140 * 11 9 8 31 31 H 1.09000 * 109.48280 * 303.68611 * 14 12 11 32 32 H 1.08999 * 109.48009 * 63.73189 * 14 12 11 33 33 H 1.09000 * 109.62612 * 65.08757 * 15 14 12 34 34 H 1.08999 * 109.63054 * 185.46736 * 15 14 12 35 35 H 0.97001 * 120.00496 * 180.02562 * 18 17 16 36 36 H 1.08999 * 109.62530 * 68.36999 * 23 16 15 37 37 H 1.08994 * 109.62620 * 188.74458 * 23 16 15 38 38 H 1.09000 * 109.48366 * 296.27094 * 24 12 11 39 39 H 1.09003 * 109.48746 * 56.31033 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2053 0.0000 4 7 1.3320 2.3266 0.0052 5 6 1.9247 3.5029 -0.0009 6 7 3.2381 3.6284 -0.0066 7 6 4.0262 2.5671 -0.0059 8 6 3.4481 1.2941 0.0004 9 6 4.2858 0.0798 0.0020 10 8 3.7642 -1.0186 0.0080 11 7 5.6292 0.1877 0.0027 12 6 6.4611 -1.0181 0.0103 13 1 5.9754 -1.7970 -0.5776 14 6 7.8266 -0.6977 -0.5997 15 6 8.6632 -1.9791 -0.6766 16 6 8.7262 -2.5959 0.7032 17 6 9.9347 -2.9480 1.2658 18 7 11.0521 -2.7492 0.6014 19 14 9.9849 -3.7075 2.9717 20 1 9.8893 -5.1851 2.8588 21 1 11.2610 -3.3436 3.6382 22 1 8.8443 -3.1976 3.7743 23 6 7.4293 -2.8169 1.4498 24 6 6.6374 -1.5050 1.4496 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.3152 4.3945 -0.0016 29 1 5.1001 2.6816 -0.0102 30 1 6.0453 1.0639 -0.0017 31 1 7.6907 -0.2915 -1.6021 32 1 8.3401 0.0348 0.0231 33 1 8.1973 -2.6795 -1.3698 34 1 9.6696 -1.7394 -1.0198 35 1 11.9024 -2.9973 0.9970 36 1 6.8491 -3.5948 0.9535 37 1 7.6438 -3.1182 2.4751 38 1 7.1790 -0.7534 2.0239 39 1 5.6587 -1.6711 1.8998 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196544197.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:44 Heat of formation + Delta-G solvation = -54.747365 kcal Electronic energy + Delta-G solvation = -23119.692235 eV Core-core repulsion = 19640.621907 eV Total energy + Delta-G solvation = -3479.070328 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.48211 -40.61332 -39.62610 -38.36244 -35.47095 -34.51058 -33.65286 -32.73909 -31.46426 -29.20643 -28.44879 -26.33751 -24.85842 -24.02810 -23.30298 -21.79334 -21.30034 -19.94808 -19.11739 -18.83636 -17.79383 -17.42178 -16.96825 -16.41435 -16.27486 -15.87594 -15.70821 -15.55579 -15.15026 -14.92504 -14.55018 -14.44073 -14.14283 -13.92829 -13.45873 -13.09614 -12.77763 -12.73011 -12.66382 -12.57995 -12.52939 -11.93323 -11.80062 -11.54789 -11.38725 -11.10722 -10.79625 -10.65160 -10.58750 -10.52060 -10.34022 -9.87077 -8.15711 -6.09788 -0.61666 -0.04912 1.39740 1.43214 1.50651 1.78360 1.82270 2.08039 2.42265 2.70152 2.89704 3.06772 3.12286 3.52046 3.65191 3.97087 4.11481 4.22683 4.30569 4.33945 4.38898 4.51491 4.65047 4.73278 4.85795 4.98824 5.05274 5.09312 5.13541 5.25378 5.26328 5.57164 5.58818 5.61893 5.68718 5.77739 5.84297 5.98393 6.36653 6.57191 6.86249 6.95769 7.23607 7.48494 8.94703 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.027833 B = 0.003659 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.766410 B = 7649.956815 C = 8065.709150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.292 6.292 3 C 0.396 3.604 4 N -0.584 5.584 5 C 0.358 3.642 6 N -0.551 5.551 7 C 0.226 3.774 8 C -0.280 4.280 9 C 0.565 3.435 10 O -0.563 6.563 11 N -0.705 5.705 12 C 0.169 3.831 13 H 0.057 0.943 14 C -0.100 4.100 15 C 0.008 3.992 16 C -0.498 4.498 17 C 0.027 3.973 18 N -0.928 5.928 19 Si 0.936 3.064 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.252 1.252 23 C -0.021 4.021 24 C -0.106 4.106 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.116 0.884 28 H 0.245 0.755 29 H 0.207 0.793 30 H 0.411 0.589 31 H 0.062 0.938 32 H 0.062 0.938 33 H -0.004 1.004 34 H 0.035 0.965 35 H 0.263 0.737 36 H 0.012 0.988 37 H 0.036 0.964 38 H 0.058 0.942 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.166 14.271 -0.618 23.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.194 6.194 3 C 0.209 3.791 4 N -0.315 5.315 5 C 0.072 3.928 6 N -0.269 5.269 7 C 0.061 3.939 8 C -0.289 4.289 9 C 0.351 3.649 10 O -0.442 6.442 11 N -0.357 5.357 12 C 0.065 3.935 13 H 0.075 0.925 14 C -0.139 4.139 15 C -0.030 4.030 16 C -0.517 4.517 17 C -0.172 4.172 18 N -0.568 5.568 19 Si 0.763 3.237 20 H -0.205 1.205 21 H -0.216 1.216 22 H -0.176 1.176 23 C -0.059 4.059 24 C -0.145 4.145 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.135 0.865 28 H 0.261 0.739 29 H 0.223 0.777 30 H 0.248 0.752 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.014 0.986 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.030 0.970 37 H 0.054 0.946 38 H 0.077 0.923 39 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -18.846 13.909 -0.609 23.431 hybrid contribution 0.868 -1.127 0.713 1.591 sum -17.978 12.783 0.104 22.059 Atomic orbital electron populations 1.23293 0.74998 1.05097 1.03285 1.86518 1.24997 1.23533 1.84304 1.20393 0.88790 0.85816 0.84131 1.68362 1.41115 0.98983 1.23027 1.25825 0.88911 0.94499 0.83536 1.68587 1.06652 1.33020 1.18638 1.23862 1.02237 0.84551 0.83244 1.20945 0.92295 0.96957 1.18723 1.17919 0.82506 0.88090 0.76398 1.90812 1.73637 1.28864 1.50913 1.45952 1.04882 1.10684 1.74196 1.20663 0.90428 0.85921 0.96530 0.92525 1.21707 0.93528 0.99441 0.99204 1.19302 0.96027 0.92760 0.94910 1.20583 0.90574 1.38871 1.01650 1.25527 0.95065 0.95917 1.00660 1.69947 0.98244 1.49125 1.39471 0.85880 0.77271 0.78963 0.81621 1.20461 1.21591 1.17642 1.19791 0.95035 0.94197 0.96905 1.21770 0.97852 0.98853 0.95977 0.91133 0.91057 0.86531 0.73898 0.77688 0.75165 0.91977 0.91916 0.98571 0.94652 0.92745 0.96983 0.94595 0.92291 0.94431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.41 113.37 1.18 1.68 16 2 O -0.29 -8.29 8.73 -65.40 -0.57 -8.86 16 3 C 0.40 10.29 7.54 85.17 0.64 10.94 16 4 N -0.58 -11.85 9.37 -312.04 -2.93 -14.77 16 5 C 0.36 5.43 12.27 180.86 2.22 7.65 16 6 N -0.55 -9.54 10.42 -199.12 -2.07 -11.62 16 7 C 0.23 4.14 10.81 85.02 0.92 5.06 16 8 C -0.28 -7.13 5.92 -19.83 -0.12 -7.25 16 9 C 0.56 18.16 7.74 86.69 0.67 18.83 16 10 O -0.56 -23.20 14.98 16.21 0.24 -22.96 16 11 N -0.71 -20.50 5.03 -445.84 -2.24 -22.75 16 12 C 0.17 6.30 2.35 44.96 0.11 6.40 16 13 H 0.06 2.42 7.58 -2.39 -0.02 2.40 16 14 C -0.10 -3.83 5.40 30.66 0.17 -3.67 16 15 C 0.01 0.39 5.96 30.11 0.18 0.57 16 16 C -0.50 -25.90 5.51 -16.17 -0.09 -25.99 16 17 C 0.03 1.46 5.46 84.65 0.46 1.92 16 18 N -0.93 -53.44 12.73 21.45 0.27 -53.16 16 19 Si 0.94 42.97 27.53 68.60 1.89 44.86 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 22 H -0.25 -10.95 6.11 99.48 0.61 -10.34 16 23 C -0.02 -0.99 5.59 30.11 0.17 -0.83 16 24 C -0.11 -4.29 5.50 30.66 0.17 -4.12 16 25 H 0.07 1.13 8.12 -2.39 -0.02 1.11 16 26 H 0.07 1.13 8.12 -2.39 -0.02 1.11 16 27 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.25 1.40 8.06 -2.91 -0.02 1.37 16 29 H 0.21 2.37 6.53 -2.91 -0.02 2.35 16 30 H 0.41 8.60 6.73 -92.71 -0.62 7.97 16 31 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 34 H 0.03 1.89 7.08 -2.39 -0.02 1.87 16 35 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 36 H 0.01 0.56 8.14 -2.39 -0.02 0.55 16 37 H 0.04 1.65 4.59 -2.39 -0.01 1.64 16 38 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -70.85 321.69 1.63 -69.22 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 0.36 Total: 8.83 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 6.67 Total: 11.20 kcal Atomic # 7 Polarization: -95.33 SS G_CDS: -6.97 Total: -102.30 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.33 Total: -31.81 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.89 Total: 44.86 kcal Total: -70.85 1.63 -69.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196544197.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.470 kcal (2) G-P(sol) polarization free energy of solvation -70.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds