Wall clock time and date at job start Tue Mar 31 2020 06:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36706 * 120.00060 * 2 1 4 4 H 1.07998 * 120.00764 * 215.33452 * 3 2 1 5 5 C 1.39168 * 119.99704 * 35.34368 * 3 2 1 6 6 N 1.31279 * 119.99948 * 5.15063 * 5 3 2 7 7 Si 1.86805 * 120.00080 * 185.15744 * 5 3 2 8 8 H 1.48502 * 109.46857 * 59.99207 * 7 5 3 9 9 H 1.48499 * 109.47149 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46817 * 299.99403 * 7 5 3 11 11 C 1.34774 * 120.00270 * 180.02562 * 2 1 3 12 12 O 1.21538 * 120.00145 * 5.80502 * 11 2 1 13 13 C 1.48247 * 120.00255 * 185.81404 * 11 2 1 14 14 C 1.39315 * 120.52843 * 175.22990 * 13 11 2 15 15 C 1.39521 * 118.20402 * 179.97438 * 14 13 11 16 16 O 1.35515 * 120.49249 * 179.97438 * 15 14 13 17 17 C 1.42898 * 117.00367 * 179.97438 * 16 15 14 18 18 C 1.52993 * 109.47045 * 179.97438 * 17 16 15 19 19 C 1.53780 * 113.69178 * 85.93292 * 18 17 16 20 20 C 1.53785 * 87.08033 * 139.98936 * 19 18 17 21 21 C 1.53777 * 87.08101 * 334.56854 * 20 19 18 22 22 N 1.32712 * 119.02276 * 0.24698 * 15 14 13 23 23 C 1.31866 * 120.96472 * 359.49027 * 22 15 14 24 24 N 1.31548 * 121.99814 * 0.52689 * 23 22 15 25 25 H 1.08991 * 109.47397 * 264.99598 * 1 2 3 26 26 H 1.08997 * 109.46953 * 24.99951 * 1 2 3 27 27 H 1.09003 * 109.46868 * 144.99730 * 1 2 3 28 28 H 0.97008 * 120.00103 * 180.02562 * 6 5 3 29 29 H 1.08001 * 120.90493 * 359.97438 * 14 13 11 30 30 H 1.08999 * 109.47023 * 59.99826 * 17 16 15 31 31 H 1.08998 * 109.46573 * 299.99597 * 17 16 15 32 32 H 1.08997 * 112.85110 * 314.66373 * 18 17 16 33 33 H 1.08994 * 113.61737 * 254.53757 * 19 18 17 34 34 H 1.09000 * 113.61284 * 25.44841 * 19 18 17 35 35 H 1.09000 * 113.61429 * 220.02034 * 20 19 18 36 36 H 1.08998 * 113.61156 * 89.12075 * 20 19 18 37 37 H 1.09001 * 113.61586 * 270.88091 * 21 20 19 38 38 H 1.09009 * 113.68889 * 139.98880 * 21 20 19 39 39 H 1.08008 * 119.00467 * 180.24596 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1485 1.1839 0.0000 4 1 3.0793 1.2702 -0.5409 5 6 1.6450 2.2780 0.6972 6 7 0.5684 2.1462 1.4368 7 14 2.5009 3.9343 0.5806 8 1 2.5149 4.3857 -0.8341 9 1 1.7721 4.9277 1.4096 10 1 3.8960 3.8063 1.0731 11 6 2.1389 -1.1671 -0.0005 12 8 1.5359 -2.2170 -0.1074 13 6 3.6156 -1.1705 0.1295 14 6 4.3145 -2.3715 0.2298 15 6 5.7035 -2.3181 0.3497 16 8 6.4293 -3.4581 0.4509 17 6 7.8463 -3.3167 0.5698 18 6 8.4900 -4.7007 0.6725 19 6 8.7819 -5.3492 -0.6910 20 6 10.1051 -5.8446 -0.0837 21 6 10.0119 -4.6577 0.8895 22 7 6.3031 -1.1343 0.3688 23 6 5.6066 -0.0193 0.2664 24 7 4.2961 -0.0240 0.1518 25 1 -0.3634 -0.0896 1.0236 26 1 -0.3633 0.9314 -0.4343 27 1 -0.3633 -0.8418 -0.5895 28 1 0.2172 2.9089 1.9225 29 1 3.7952 -3.3184 0.2151 30 1 8.0800 -2.7402 1.4649 31 1 8.2346 -2.7991 -0.3074 32 1 7.9685 -5.3597 1.3667 33 1 8.0921 -6.1527 -0.9490 34 1 8.9147 -4.6284 -1.4978 35 1 10.9505 -5.7820 -0.7690 36 1 10.0251 -6.8163 0.4036 37 1 10.4808 -3.7478 0.5148 38 1 10.3148 -4.9015 1.9079 39 1 6.1274 0.9268 0.2816 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198812027.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:39 Heat of formation + Delta-G solvation = 14.779468 kcal Electronic energy + Delta-G solvation = -22730.231703 eV Core-core repulsion = 19254.176285 eV Total energy + Delta-G solvation = -3476.055418 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.72412 -39.36563 -38.33825 -37.43692 -34.90354 -32.67238 -31.58308 -31.23483 -28.82518 -26.83000 -25.86341 -25.24159 -23.76981 -23.61022 -22.51459 -19.95314 -19.59504 -18.49956 -17.66916 -16.71160 -16.22604 -15.75340 -15.34783 -14.86109 -14.79160 -14.72169 -14.26152 -14.17812 -14.01534 -13.51688 -13.40389 -12.70500 -12.69651 -12.48697 -12.02268 -11.77042 -11.37945 -11.27729 -11.23726 -10.96503 -10.84109 -10.71718 -10.62942 -10.45137 -10.39349 -10.11691 -9.66017 -9.21917 -9.00649 -8.65635 -8.31468 -7.61195 -6.47771 -4.00075 1.21132 1.61773 3.00186 3.13421 3.18497 3.20989 3.74314 4.04192 4.32791 4.36982 4.40967 4.45294 4.57025 4.59589 4.65156 4.93108 5.09211 5.13705 5.25562 5.44228 5.47388 5.48437 5.50145 5.63652 5.67191 5.75118 5.78579 5.96718 6.05509 6.14663 6.24044 6.57006 6.80333 6.86446 7.19678 7.27288 7.49899 7.55293 7.76830 8.44496 8.61678 8.98810 9.35288 9.77965 10.54808 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.026543 B = 0.003584 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.638553 B = 7811.224496 C = 8674.761271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.397 5.397 3 C -0.298 4.298 4 H 0.134 0.866 5 C 0.034 3.966 6 N -0.861 5.861 7 Si 0.931 3.069 8 H -0.271 1.271 9 H -0.285 1.285 10 H -0.267 1.267 11 C 0.476 3.524 12 O -0.608 6.608 13 C 0.189 3.811 14 C -0.207 4.207 15 C 0.346 3.654 16 O -0.302 6.302 17 C 0.081 3.919 18 C -0.114 4.114 19 C -0.136 4.136 20 C -0.142 4.142 21 C -0.130 4.130 22 N -0.588 5.588 23 C 0.311 3.689 24 N -0.480 5.480 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.273 0.727 29 H 0.153 0.847 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.962 -6.909 -1.522 16.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.111 5.111 3 C -0.429 4.429 4 H 0.150 0.850 5 C -0.173 4.173 6 N -0.498 5.498 7 Si 0.757 3.243 8 H -0.196 1.196 9 H -0.211 1.211 10 H -0.192 1.192 11 C 0.265 3.735 12 O -0.496 6.496 13 C 0.045 3.955 14 C -0.231 4.231 15 C 0.160 3.840 16 O -0.207 6.207 17 C 0.006 3.994 18 C -0.132 4.132 19 C -0.173 4.173 20 C -0.180 4.180 21 C -0.167 4.167 22 N -0.320 5.320 23 C 0.023 3.977 24 N -0.200 5.200 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.171 0.829 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.118 0.882 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 14.852 -6.764 -1.427 16.382 hybrid contribution 0.158 0.424 0.280 0.532 sum 15.010 -6.341 -1.147 16.335 Atomic orbital electron populations 1.21454 0.80237 0.99979 1.01305 1.43623 1.05987 1.05099 1.56372 1.20690 1.07411 0.86052 1.28742 0.84955 1.25707 0.96146 1.00861 0.94557 1.69908 1.21165 1.32132 1.26621 0.85919 0.79625 0.80236 0.78508 1.19621 1.21089 1.19227 1.17649 0.84624 0.84329 0.86874 1.90629 1.68170 1.31366 1.59431 1.21636 0.95846 0.87269 0.90745 1.21762 0.91112 1.01689 1.08554 1.19860 0.88783 0.85152 0.90175 1.86208 1.20698 1.26933 1.86897 1.22664 0.77531 0.97010 1.02243 1.22647 0.95586 0.95781 0.99174 1.22985 0.97256 1.00617 0.96459 1.22806 0.98127 0.98188 0.98846 1.22888 0.94477 0.99197 1.00175 1.67928 1.42712 0.98895 1.22470 1.24892 0.87999 0.95005 0.89770 1.69466 1.07474 1.28397 1.14694 0.92371 0.91316 0.94051 0.91695 0.82940 0.91547 0.91502 0.88204 0.91122 0.89965 0.91313 0.90097 0.89760 0.91079 0.79060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.74 8.71 59.84 0.52 3.26 16 2 N -0.40 -10.30 2.96 -123.15 -0.36 -10.66 16 3 C -0.30 -7.56 7.90 -15.03 -0.12 -7.68 16 4 H 0.13 3.26 5.51 -52.49 -0.29 2.97 16 5 C 0.03 0.85 5.18 -17.44 -0.09 0.76 16 6 N -0.86 -22.23 11.17 55.51 0.62 -21.61 16 7 Si 0.93 19.21 29.56 -169.99 -5.02 14.19 16 8 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 9 H -0.29 -5.89 7.11 56.52 0.40 -5.49 16 10 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 11 C 0.48 12.24 7.62 -12.15 -0.09 12.15 16 12 O -0.61 -16.54 16.06 5.33 0.09 -16.45 16 13 C 0.19 4.31 6.68 -82.70 -0.55 3.76 16 14 C -0.21 -4.21 9.68 -38.70 -0.37 -4.59 16 15 C 0.35 6.32 7.53 -16.69 -0.13 6.20 16 16 O -0.30 -4.84 10.13 -18.24 -0.18 -5.03 16 17 C 0.08 1.01 5.16 37.15 0.19 1.20 16 18 C -0.11 -1.12 4.01 -89.81 -0.36 -1.48 16 19 C -0.14 -1.23 7.64 -25.92 -0.20 -1.43 16 20 C -0.14 -1.05 8.08 -25.92 -0.21 -1.26 16 21 C -0.13 -1.02 7.64 -25.92 -0.20 -1.21 16 22 N -0.59 -10.33 9.36 -14.66 -0.14 -10.47 16 23 C 0.31 5.57 12.27 -92.30 -1.13 4.44 16 24 N -0.48 -10.29 6.42 -11.21 -0.07 -10.37 16 25 H 0.06 1.46 7.73 -51.93 -0.40 1.05 16 26 H 0.07 1.63 7.32 -51.93 -0.38 1.25 16 27 H 0.04 0.95 7.50 -51.93 -0.39 0.56 16 28 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 29 H 0.15 3.05 7.74 -52.49 -0.41 2.65 16 30 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 31 H 0.07 0.83 7.86 -51.93 -0.41 0.42 16 32 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.75 7.92 -51.93 -0.41 0.34 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 38 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 39 H 0.19 2.70 8.06 -52.48 -0.42 2.28 16 LS Contribution 329.95 15.07 4.97 4.97 Total: -1.00 -29.34 329.95 -8.04 -37.39 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -5.20 Total: 3.92 kcal Atomic # 6 Polarization: 16.85 SS G_CDS: -2.74 Total: 14.11 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: 0.05 Total: -53.10 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.10 Total: -21.48 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.34 -8.04 -37.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198812027.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.166 kcal (2) G-P(sol) polarization free energy of solvation -29.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds