Wall clock time and date at job start Tue Mar 31 2020 06:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36706 * 120.00060 * 2 1 4 4 H 1.07998 * 120.00764 * 215.33452 * 3 2 1 5 5 C 1.39168 * 119.99704 * 35.34368 * 3 2 1 6 6 N 1.31279 * 119.99948 * 5.15063 * 5 3 2 7 7 Si 1.86805 * 120.00080 * 185.15744 * 5 3 2 8 8 H 1.48502 * 109.46857 * 59.99207 * 7 5 3 9 9 H 1.48499 * 109.47149 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46817 * 299.99403 * 7 5 3 11 11 C 1.34774 * 120.00270 * 180.02562 * 2 1 3 12 12 O 1.21538 * 120.00145 * 5.80502 * 11 2 1 13 13 C 1.48247 * 120.00255 * 185.81404 * 11 2 1 14 14 C 1.39315 * 120.52843 * 175.22990 * 13 11 2 15 15 C 1.39521 * 118.20402 * 179.97438 * 14 13 11 16 16 O 1.35515 * 120.49249 * 179.97438 * 15 14 13 17 17 C 1.42898 * 117.00367 * 179.97438 * 16 15 14 18 18 C 1.52993 * 109.47045 * 179.97438 * 17 16 15 19 19 C 1.53780 * 113.69178 * 85.93292 * 18 17 16 20 20 C 1.53785 * 87.08033 * 139.98936 * 19 18 17 21 21 C 1.53777 * 87.08101 * 334.56854 * 20 19 18 22 22 N 1.32712 * 119.02276 * 0.24698 * 15 14 13 23 23 C 1.31866 * 120.96472 * 359.49027 * 22 15 14 24 24 N 1.31548 * 121.99814 * 0.52689 * 23 22 15 25 25 H 1.08991 * 109.47397 * 264.99598 * 1 2 3 26 26 H 1.08997 * 109.46953 * 24.99951 * 1 2 3 27 27 H 1.09003 * 109.46868 * 144.99730 * 1 2 3 28 28 H 0.97008 * 120.00103 * 180.02562 * 6 5 3 29 29 H 1.08001 * 120.90493 * 359.97438 * 14 13 11 30 30 H 1.08999 * 109.47023 * 59.99826 * 17 16 15 31 31 H 1.08998 * 109.46573 * 299.99597 * 17 16 15 32 32 H 1.08997 * 112.85110 * 314.66373 * 18 17 16 33 33 H 1.08994 * 113.61737 * 254.53757 * 19 18 17 34 34 H 1.09000 * 113.61284 * 25.44841 * 19 18 17 35 35 H 1.09000 * 113.61429 * 220.02034 * 20 19 18 36 36 H 1.08998 * 113.61156 * 89.12075 * 20 19 18 37 37 H 1.09001 * 113.61586 * 270.88091 * 21 20 19 38 38 H 1.09009 * 113.68889 * 139.98880 * 21 20 19 39 39 H 1.08008 * 119.00467 * 180.24596 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1485 1.1839 0.0000 4 1 3.0793 1.2702 -0.5409 5 6 1.6450 2.2780 0.6972 6 7 0.5684 2.1462 1.4368 7 14 2.5009 3.9343 0.5806 8 1 2.5149 4.3857 -0.8341 9 1 1.7721 4.9277 1.4096 10 1 3.8960 3.8063 1.0731 11 6 2.1389 -1.1671 -0.0005 12 8 1.5359 -2.2170 -0.1074 13 6 3.6156 -1.1705 0.1295 14 6 4.3145 -2.3715 0.2298 15 6 5.7035 -2.3181 0.3497 16 8 6.4293 -3.4581 0.4509 17 6 7.8463 -3.3167 0.5698 18 6 8.4900 -4.7007 0.6725 19 6 8.7819 -5.3492 -0.6910 20 6 10.1051 -5.8446 -0.0837 21 6 10.0119 -4.6577 0.8895 22 7 6.3031 -1.1343 0.3688 23 6 5.6066 -0.0193 0.2664 24 7 4.2961 -0.0240 0.1518 25 1 -0.3634 -0.0896 1.0236 26 1 -0.3633 0.9314 -0.4343 27 1 -0.3633 -0.8418 -0.5895 28 1 0.2172 2.9089 1.9225 29 1 3.7952 -3.3184 0.2151 30 1 8.0800 -2.7402 1.4649 31 1 8.2346 -2.7991 -0.3074 32 1 7.9685 -5.3597 1.3667 33 1 8.0921 -6.1527 -0.9490 34 1 8.9147 -4.6284 -1.4978 35 1 10.9505 -5.7820 -0.7690 36 1 10.0251 -6.8163 0.4036 37 1 10.4808 -3.7478 0.5148 38 1 10.3148 -4.9015 1.9079 39 1 6.1274 0.9268 0.2816 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198812027.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:39 Heat of formation + Delta-G solvation = -2.082234 kcal Electronic energy + Delta-G solvation = -22730.962881 eV Core-core repulsion = 19254.176285 eV Total energy + Delta-G solvation = -3476.786596 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.24992 -40.56408 -39.87668 -38.70912 -36.86241 -34.25471 -33.46946 -32.74969 -29.86583 -28.70529 -27.07512 -26.51484 -25.26624 -25.10378 -23.60799 -21.63876 -20.47337 -20.08950 -19.16948 -18.44100 -17.38361 -17.15329 -16.57910 -16.44737 -16.38990 -16.18514 -15.90911 -15.65653 -15.57788 -15.00317 -14.57826 -14.43317 -13.76190 -13.40439 -13.34896 -13.19356 -13.12400 -12.83446 -12.71999 -12.53107 -12.22648 -12.08191 -11.72675 -11.51599 -11.30783 -11.25820 -11.10258 -11.02493 -10.96863 -10.15306 -10.06222 -9.52318 -8.33338 -5.95874 -0.43497 0.10107 1.51488 1.52425 1.62601 1.69512 1.96851 2.33070 2.67763 2.92489 3.09250 3.16755 3.36944 3.60746 3.68777 3.75032 3.92975 3.99305 4.07448 4.27519 4.32537 4.44736 4.52804 4.62576 4.73963 4.83746 4.84893 4.88015 4.91127 5.09073 5.09856 5.18767 5.19902 5.29981 5.56087 5.61511 5.78450 5.86936 6.12516 6.54063 7.00201 7.14146 7.42571 7.83380 8.70503 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.026543 B = 0.003584 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.638553 B = 7811.224496 C = 8674.761271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.411 5.411 3 C -0.319 4.319 4 H 0.139 0.861 5 C -0.006 4.006 6 N -0.896 5.896 7 Si 0.996 3.004 8 H -0.262 1.262 9 H -0.287 1.287 10 H -0.256 1.256 11 C 0.463 3.537 12 O -0.634 6.634 13 C 0.174 3.826 14 C -0.214 4.214 15 C 0.359 3.641 16 O -0.305 6.305 17 C 0.076 3.924 18 C -0.118 4.118 19 C -0.142 4.142 20 C -0.134 4.134 21 C -0.122 4.122 22 N -0.573 5.573 23 C 0.318 3.682 24 N -0.501 5.501 25 H 0.043 0.957 26 H 0.068 0.932 27 H 0.045 0.955 28 H 0.274 0.726 29 H 0.149 0.851 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.122 -6.405 -1.580 19.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.125 5.125 3 C -0.449 4.449 4 H 0.156 0.844 5 C -0.209 4.209 6 N -0.534 5.534 7 Si 0.819 3.181 8 H -0.187 1.187 9 H -0.213 1.213 10 H -0.180 1.180 11 C 0.253 3.747 12 O -0.524 6.524 13 C 0.031 3.969 14 C -0.239 4.239 15 C 0.172 3.828 16 O -0.210 6.210 17 C 0.002 3.998 18 C -0.137 4.137 19 C -0.179 4.179 20 C -0.171 4.171 21 C -0.160 4.160 22 N -0.305 5.305 23 C 0.031 3.969 24 N -0.222 5.222 25 H 0.061 0.939 26 H 0.087 0.913 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.167 0.833 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 18.036 -6.269 -1.492 19.152 hybrid contribution -0.684 0.112 0.296 0.754 sum 17.352 -6.157 -1.195 18.451 Atomic orbital electron populations 1.21312 0.80229 1.00048 1.00349 1.43852 1.06395 1.05614 1.56610 1.20956 1.08005 0.86077 1.29834 0.84367 1.26571 0.96563 1.04058 0.93752 1.70021 1.22590 1.33116 1.27630 0.84933 0.78853 0.75589 0.78762 1.18693 1.21280 1.17999 1.18170 0.86208 0.83950 0.86376 1.90579 1.69309 1.32168 1.60382 1.21275 0.94591 0.88725 0.92357 1.21720 0.92300 1.00804 1.09111 1.19851 0.88292 0.86026 0.88628 1.86236 1.22701 1.25927 1.86108 1.23002 0.75346 0.98987 1.02489 1.22747 0.96835 0.94220 0.99881 1.23035 0.98357 1.00510 0.96017 1.22788 0.97373 0.98343 0.98637 1.22897 0.92332 0.99708 1.01019 1.68093 1.42061 0.98579 1.21735 1.25673 0.86886 0.96529 0.87816 1.69339 1.09168 1.27985 1.15693 0.93886 0.91333 0.93595 0.91633 0.83332 0.91315 0.91069 0.88505 0.91663 0.90101 0.90174 0.89358 0.89132 0.90053 0.74920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 6.19 8.71 127.77 1.11 7.31 16 2 N -0.41 -21.84 2.96 -661.83 -1.96 -23.80 16 3 C -0.32 -16.24 7.90 84.16 0.66 -15.58 16 4 H 0.14 6.74 5.51 -2.91 -0.02 6.72 16 5 C -0.01 -0.30 5.18 85.00 0.44 0.14 16 6 N -0.90 -46.87 11.17 21.70 0.24 -46.62 16 7 Si 1.00 38.50 29.56 68.60 2.03 40.53 16 8 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 9 H -0.29 -11.08 7.11 99.48 0.71 -10.37 16 10 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 11 C 0.46 24.44 7.62 86.91 0.66 25.10 16 12 O -0.63 -35.63 16.06 -3.83 -0.06 -35.69 16 13 C 0.17 7.97 6.68 41.84 0.28 8.25 16 14 C -0.21 -8.73 9.68 22.84 0.22 -8.51 16 15 C 0.36 12.60 7.53 84.87 0.64 13.24 16 16 O -0.31 -9.31 10.13 -88.18 -0.89 -10.21 16 17 C 0.08 1.74 5.16 71.98 0.37 2.11 16 18 C -0.12 -2.10 4.01 -10.27 -0.04 -2.14 16 19 C -0.14 -2.30 7.64 31.12 0.24 -2.06 16 20 C -0.13 -1.61 8.08 31.12 0.25 -1.36 16 21 C -0.12 -1.56 7.64 31.12 0.24 -1.32 16 22 N -0.57 -18.65 9.36 -313.01 -2.93 -21.58 16 23 C 0.32 10.52 12.27 180.94 2.22 12.74 16 24 N -0.50 -20.93 6.42 -189.38 -1.21 -22.15 16 25 H 0.04 2.24 7.73 -2.39 -0.02 2.23 16 26 H 0.07 3.36 7.32 -2.39 -0.02 3.34 16 27 H 0.05 2.19 7.50 -2.39 -0.02 2.17 16 28 H 0.27 13.52 8.31 -92.70 -0.77 12.75 16 29 H 0.15 6.07 7.74 -2.91 -0.02 6.05 16 30 H 0.07 1.55 8.12 -2.39 -0.02 1.53 16 31 H 0.07 1.58 7.86 -2.39 -0.02 1.56 16 32 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.08 1.33 7.92 -2.39 -0.02 1.31 16 35 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.09 1.06 8.10 -2.39 -0.02 1.04 16 38 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.23 5.57 8.06 -2.91 -0.02 5.55 16 Total: -1.00 -63.45 329.95 3.57 -59.88 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 1.06 Total: 21.71 kcal Atomic # 6 Polarization: 30.63 SS G_CDS: 7.30 Total: 37.92 kcal Atomic # 7 Polarization: -108.29 SS G_CDS: -5.86 Total: -114.15 kcal Atomic # 8 Polarization: -44.94 SS G_CDS: -0.96 Total: -45.89 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.03 Total: 40.53 kcal Total: -63.45 3.57 -59.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198812027.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.801 kcal (2) G-P(sol) polarization free energy of solvation -63.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds