Wall clock time and date at job start Tue Mar 31 2020 06:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00073 * 2 1 4 4 H 1.48500 * 109.46971 * 272.68846 * 3 2 1 5 5 H 1.48501 * 109.47187 * 32.68677 * 3 2 1 6 6 H 1.48498 * 109.47310 * 152.68703 * 3 2 1 7 7 C 1.38812 * 119.99530 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00865 * 336.88899 * 7 2 1 9 9 N 1.36943 * 119.99663 * 156.89729 * 7 2 1 10 10 C 1.46501 * 119.99808 * 141.47836 * 9 7 2 11 11 C 1.50701 * 109.47193 * 274.10489 * 10 9 7 12 12 C 1.38238 * 119.99507 * 85.88932 * 11 10 9 13 13 C 1.38234 * 119.99412 * 179.97438 * 12 11 10 14 14 C 1.38235 * 120.00391 * 359.97438 * 13 12 11 15 15 C 1.38235 * 119.99799 * 0.27764 * 14 13 12 16 16 C 1.38228 * 119.99903 * 359.51089 * 15 14 13 17 17 C 1.46496 * 119.99911 * 321.47423 * 9 7 2 18 18 C 1.52997 * 109.47450 * 273.03537 * 17 9 7 19 19 C 1.52580 * 109.22504 * 295.12328 * 18 17 9 20 20 C 1.53095 * 109.95797 * 169.00254 * 19 18 17 21 21 S 1.81744 * 108.84005 * 63.02427 * 20 19 18 22 22 C 1.81746 * 102.22315 * 306.73408 * 21 20 19 23 23 C 1.52581 * 109.22938 * 173.88689 * 18 17 9 24 24 H 0.96999 * 120.00223 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46870 * 154.11201 * 10 9 7 26 26 H 1.08991 * 109.47238 * 34.10864 * 10 9 7 27 27 H 1.07992 * 120.00284 * 359.97438 * 12 11 10 28 28 H 1.08003 * 119.99599 * 180.02562 * 13 12 11 29 29 H 1.08001 * 119.99764 * 180.02562 * 14 13 12 30 30 H 1.08000 * 119.99559 * 179.72297 * 15 14 13 31 31 H 1.08002 * 120.00042 * 180.27723 * 16 15 14 32 32 H 1.09005 * 109.47091 * 33.03211 * 17 9 7 33 33 H 1.08998 * 109.47238 * 153.03246 * 17 9 7 34 34 H 1.08996 * 109.22245 * 54.48175 * 18 17 9 35 35 H 1.09005 * 109.38768 * 289.15230 * 19 18 17 36 36 H 1.08999 * 109.39080 * 48.85131 * 19 18 17 37 37 H 1.08994 * 109.57581 * 303.21770 * 20 19 18 38 38 H 1.09000 * 109.57931 * 182.82903 * 20 19 18 39 39 H 1.09007 * 109.57613 * 293.46235 * 22 21 20 40 40 H 1.08994 * 109.57829 * 173.07284 * 22 21 20 41 41 H 1.09003 * 109.38758 * 311.14131 * 23 18 17 42 42 H 1.09000 * 109.39163 * 70.84299 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4408 2.0792 -1.3985 5 1 1.4773 2.6356 0.7561 6 1 3.5750 1.4244 0.6424 7 6 2.0102 -1.2022 0.0005 8 1 1.5353 -2.0999 0.3680 9 7 3.2973 -1.2500 -0.4648 10 6 4.2886 -2.0929 0.2082 11 6 4.9041 -1.3288 1.3521 12 6 4.2890 -1.3236 2.5900 13 6 4.8538 -0.6231 3.6394 14 6 6.0340 0.0717 3.4510 15 6 6.6463 0.0707 2.2117 16 6 6.0838 -0.6333 1.1635 17 6 3.6827 -0.4583 -1.6356 18 6 3.3938 -1.2564 -2.9086 19 6 4.2863 -2.4936 -2.9393 20 6 3.8282 -3.4409 -4.0514 21 16 4.0225 -2.6035 -5.6527 22 6 3.1149 -1.0513 -5.3878 23 6 3.6533 -0.3731 -4.1253 24 1 -0.4850 0.8400 -0.0004 25 1 5.0670 -2.3749 -0.5008 26 1 3.8028 -2.9905 0.5905 27 1 3.3673 -1.8667 2.7373 28 1 4.3735 -0.6193 4.6067 29 1 6.4754 0.6185 4.2711 30 1 7.5659 0.6171 2.0634 31 1 6.5645 -0.6378 0.1964 32 1 3.1109 0.4696 -1.6510 33 1 4.7469 -0.2285 -1.5846 34 1 2.3493 -1.5680 -2.9075 35 1 5.3173 -2.1915 -3.1231 36 1 4.2267 -3.0067 -1.9795 37 1 2.7808 -3.7018 -3.9005 38 1 4.4376 -4.3445 -4.0356 39 1 2.0534 -1.2656 -5.2629 40 1 3.2582 -0.3936 -6.2451 41 1 3.1541 0.5863 -3.9890 42 1 4.7257 -0.2094 -4.2316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207752124.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:37 Heat of formation + Delta-G solvation = 34.286381 kcal Electronic energy + Delta-G solvation = -21786.133639 eV Core-core repulsion = 18857.217319 eV Total energy + Delta-G solvation = -2928.916321 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -38.84007 -37.65582 -34.92141 -32.09117 -31.23802 -30.74004 -30.36449 -28.25404 -25.93068 -24.05002 -22.82373 -22.01303 -21.78563 -20.09437 -19.87585 -16.80138 -16.66853 -16.29293 -15.43385 -14.71557 -14.65172 -14.41329 -14.22935 -14.13062 -13.50852 -13.26179 -13.00118 -12.93823 -12.82834 -12.59740 -12.20162 -12.05319 -11.99186 -11.61858 -11.19309 -11.08992 -10.90075 -10.69427 -10.53525 -10.38464 -10.29780 -9.97954 -9.80762 -9.50998 -9.42262 -8.59834 -8.39297 -8.15611 -7.53080 -6.91732 -6.08817 -3.49611 1.89937 1.94206 1.99787 2.72083 3.24714 3.43542 3.53478 4.28639 4.46949 4.85216 5.04142 5.09038 5.21707 5.27042 5.31047 5.34864 5.38704 5.49658 5.52243 5.57402 5.67191 5.78798 5.91041 5.91923 6.01272 6.06923 6.11660 6.18398 6.22517 6.26544 6.34008 6.50688 6.53717 6.58626 6.62760 6.74685 6.94412 6.97448 7.02409 7.29025 7.56451 7.97368 8.29058 8.89025 9.62050 10.02127 11.06129 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015780 B = 0.005879 C = 0.004944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.022297 B = 4761.404818 C = 5661.992200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.044 3.956 3 Si 0.868 3.132 4 H -0.286 1.286 5 H -0.303 1.303 6 H -0.262 1.262 7 C -0.264 4.264 8 H 0.079 0.921 9 N -0.591 5.591 10 C 0.175 3.825 11 C -0.082 4.082 12 C -0.096 4.096 13 C -0.126 4.126 14 C -0.140 4.140 15 C -0.129 4.129 16 C -0.121 4.121 17 C 0.146 3.854 18 C -0.112 4.112 19 C -0.111 4.111 20 C -0.071 4.071 21 S -0.294 6.294 22 C -0.071 4.071 23 C -0.117 4.117 24 H 0.263 0.737 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.122 0.878 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.054 0.946 33 H 0.039 0.961 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.071 0.929 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.479 -2.718 -3.054 11.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.158 4.158 3 Si 0.699 3.301 4 H -0.214 1.214 5 H -0.231 1.231 6 H -0.187 1.187 7 C -0.393 4.393 8 H 0.097 0.903 9 N -0.312 5.312 10 C 0.049 3.951 11 C -0.085 4.085 12 C -0.114 4.114 13 C -0.144 4.144 14 C -0.159 4.159 15 C -0.147 4.147 16 C -0.140 4.140 17 C 0.020 3.980 18 C -0.133 4.133 19 C -0.150 4.150 20 C -0.219 4.219 21 S -0.069 6.069 22 C -0.220 4.220 23 C -0.157 4.157 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.140 0.860 28 H 0.131 0.869 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.115 0.885 41 H 0.089 0.911 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.817 -3.007 -3.980 11.911 hybrid contribution -0.352 1.733 1.134 2.101 sum 10.465 -1.274 -2.845 10.919 Atomic orbital electron populations 1.69867 1.06026 1.26815 1.50795 1.25460 0.94954 0.97655 0.97703 0.87098 0.81257 0.84810 0.76974 1.21450 1.23133 1.18655 1.18712 0.86091 0.94243 1.40249 0.90311 1.44212 1.06993 1.52987 1.26965 1.20179 0.91439 0.93082 0.90360 1.21020 0.93254 0.98231 0.95987 1.21077 0.98953 0.98963 0.92441 1.21104 0.96080 0.98301 0.98943 1.20940 0.96800 1.01017 0.97099 1.20978 0.99965 1.00122 0.93671 1.20969 0.96391 0.98474 0.98186 1.21171 0.97221 0.93982 0.85598 1.21661 1.01102 0.95321 0.95187 1.21786 0.99134 0.95919 0.98151 1.23451 1.04918 1.00215 0.93350 1.86547 1.73901 1.22822 1.23626 1.23399 1.01603 0.95316 1.01649 1.21749 1.01343 0.99277 0.93297 0.92676 0.92732 0.92321 0.85970 0.86928 0.87203 0.87190 0.87120 0.92847 0.94222 0.90025 0.91903 0.89559 0.89840 0.88581 0.89829 0.88522 0.91093 0.91301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.21 13.97 55.49 0.78 -25.43 16 2 C 0.04 1.20 5.30 -17.43 -0.09 1.11 16 3 Si 0.87 21.80 25.25 -169.99 -4.29 17.51 16 4 H -0.29 -6.94 6.54 56.52 0.37 -6.57 16 5 H -0.30 -7.90 7.11 56.52 0.40 -7.49 16 6 H -0.26 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.26 -6.78 9.88 -15.06 -0.15 -6.93 16 8 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 9 N -0.59 -12.59 1.81 -174.61 -0.32 -12.91 16 10 C 0.17 3.18 4.68 -5.19 -0.02 3.15 16 11 C -0.08 -1.51 5.44 -104.62 -0.57 -2.08 16 12 C -0.10 -1.77 9.72 -39.58 -0.38 -2.15 16 13 C -0.13 -2.11 10.05 -39.58 -0.40 -2.50 16 14 C -0.14 -2.19 10.05 -39.58 -0.40 -2.59 16 15 C -0.13 -2.04 10.05 -39.59 -0.40 -2.43 16 16 C -0.12 -2.06 9.68 -39.59 -0.38 -2.44 16 17 C 0.15 2.89 4.02 -4.05 -0.02 2.87 16 18 C -0.11 -1.91 2.12 -91.05 -0.19 -2.11 16 19 C -0.11 -1.64 4.59 -26.90 -0.12 -1.76 16 20 C -0.07 -0.97 6.45 37.21 0.24 -0.73 16 21 S -0.29 -4.16 22.33 -107.50 -2.40 -6.56 16 22 C -0.07 -0.98 6.45 37.21 0.24 -0.74 16 23 C -0.12 -1.76 5.05 -26.90 -0.14 -1.89 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.05 0.86 6.23 -51.93 -0.32 0.54 16 26 H 0.06 1.06 8.04 -51.93 -0.42 0.64 16 27 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 28 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 29 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.05 1.20 3.17 -51.93 -0.16 1.04 16 33 H 0.04 0.73 8.05 -51.93 -0.42 0.31 16 34 H 0.08 1.63 8.08 -51.93 -0.42 1.21 16 35 H 0.06 0.88 8.06 -51.93 -0.42 0.47 16 36 H 0.09 1.33 5.24 -51.93 -0.27 1.05 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 40 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.07 1.10 8.03 -51.93 -0.42 0.69 16 42 H 0.07 0.97 8.06 -51.93 -0.42 0.55 16 LS Contribution 339.84 15.07 5.12 5.12 Total: -1.00 -28.59 339.84 -10.56 -39.15 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -6.66 Total: 4.36 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: -2.78 Total: -21.23 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.46 Total: -38.34 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.29 Total: 17.51 kcal Atomic # 16 Polarization: -4.16 SS G_CDS: -2.40 Total: -6.56 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.59 -10.56 -39.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207752124.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.439 kcal (2) G-P(sol) polarization free energy of solvation -28.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds