Wall clock time and date at job start Tue Mar 31 2020 06:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00073 * 2 1 4 4 H 1.48500 * 109.46971 * 272.68846 * 3 2 1 5 5 H 1.48501 * 109.47187 * 32.68677 * 3 2 1 6 6 H 1.48498 * 109.47310 * 152.68703 * 3 2 1 7 7 C 1.38812 * 119.99530 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00865 * 336.88899 * 7 2 1 9 9 N 1.36943 * 119.99663 * 156.89729 * 7 2 1 10 10 C 1.46501 * 119.99808 * 141.47836 * 9 7 2 11 11 C 1.50701 * 109.47193 * 274.10489 * 10 9 7 12 12 C 1.38238 * 119.99507 * 85.88932 * 11 10 9 13 13 C 1.38234 * 119.99412 * 179.97438 * 12 11 10 14 14 C 1.38235 * 120.00391 * 359.97438 * 13 12 11 15 15 C 1.38235 * 119.99799 * 0.27764 * 14 13 12 16 16 C 1.38228 * 119.99903 * 359.51089 * 15 14 13 17 17 C 1.46496 * 119.99911 * 321.47423 * 9 7 2 18 18 C 1.52997 * 109.47450 * 273.03537 * 17 9 7 19 19 C 1.52580 * 109.22504 * 295.12328 * 18 17 9 20 20 C 1.53095 * 109.95797 * 169.00254 * 19 18 17 21 21 S 1.81744 * 108.84005 * 63.02427 * 20 19 18 22 22 C 1.81746 * 102.22315 * 306.73408 * 21 20 19 23 23 C 1.52581 * 109.22938 * 173.88689 * 18 17 9 24 24 H 0.96999 * 120.00223 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46870 * 154.11201 * 10 9 7 26 26 H 1.08991 * 109.47238 * 34.10864 * 10 9 7 27 27 H 1.07992 * 120.00284 * 359.97438 * 12 11 10 28 28 H 1.08003 * 119.99599 * 180.02562 * 13 12 11 29 29 H 1.08001 * 119.99764 * 180.02562 * 14 13 12 30 30 H 1.08000 * 119.99559 * 179.72297 * 15 14 13 31 31 H 1.08002 * 120.00042 * 180.27723 * 16 15 14 32 32 H 1.09005 * 109.47091 * 33.03211 * 17 9 7 33 33 H 1.08998 * 109.47238 * 153.03246 * 17 9 7 34 34 H 1.08996 * 109.22245 * 54.48175 * 18 17 9 35 35 H 1.09005 * 109.38768 * 289.15230 * 19 18 17 36 36 H 1.08999 * 109.39080 * 48.85131 * 19 18 17 37 37 H 1.08994 * 109.57581 * 303.21770 * 20 19 18 38 38 H 1.09000 * 109.57931 * 182.82903 * 20 19 18 39 39 H 1.09007 * 109.57613 * 293.46235 * 22 21 20 40 40 H 1.08994 * 109.57829 * 173.07284 * 22 21 20 41 41 H 1.09003 * 109.38758 * 311.14131 * 23 18 17 42 42 H 1.09000 * 109.39163 * 70.84299 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4408 2.0792 -1.3985 5 1 1.4773 2.6356 0.7561 6 1 3.5750 1.4244 0.6424 7 6 2.0102 -1.2022 0.0005 8 1 1.5353 -2.0999 0.3680 9 7 3.2973 -1.2500 -0.4648 10 6 4.2886 -2.0929 0.2082 11 6 4.9041 -1.3288 1.3521 12 6 4.2890 -1.3236 2.5900 13 6 4.8538 -0.6231 3.6394 14 6 6.0340 0.0717 3.4510 15 6 6.6463 0.0707 2.2117 16 6 6.0838 -0.6333 1.1635 17 6 3.6827 -0.4583 -1.6356 18 6 3.3938 -1.2564 -2.9086 19 6 4.2863 -2.4936 -2.9393 20 6 3.8282 -3.4409 -4.0514 21 16 4.0225 -2.6035 -5.6527 22 6 3.1149 -1.0513 -5.3878 23 6 3.6533 -0.3731 -4.1253 24 1 -0.4850 0.8400 -0.0004 25 1 5.0670 -2.3749 -0.5008 26 1 3.8028 -2.9905 0.5905 27 1 3.3673 -1.8667 2.7373 28 1 4.3735 -0.6193 4.6067 29 1 6.4754 0.6185 4.2711 30 1 7.5659 0.6171 2.0634 31 1 6.5645 -0.6378 0.1964 32 1 3.1109 0.4696 -1.6510 33 1 4.7469 -0.2285 -1.5846 34 1 2.3493 -1.5680 -2.9075 35 1 5.3173 -2.1915 -3.1231 36 1 4.2267 -3.0067 -1.9795 37 1 2.7808 -3.7018 -3.9005 38 1 4.4376 -4.3445 -4.0356 39 1 2.0534 -1.2656 -5.2629 40 1 3.2582 -0.3936 -6.2451 41 1 3.1541 0.5863 -3.9890 42 1 4.7257 -0.2094 -4.2316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207752124.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:36 Heat of formation + Delta-G solvation = 21.437111 kcal Electronic energy + Delta-G solvation = -21786.690826 eV Core-core repulsion = 18857.217319 eV Total energy + Delta-G solvation = -2929.473507 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.20459 -39.03431 -36.46004 -33.96578 -32.39721 -32.24453 -31.64885 -29.69391 -27.57089 -25.58772 -24.01850 -23.43058 -23.19985 -21.58188 -21.21800 -18.70597 -17.84623 -17.64944 -17.16729 -16.19184 -16.04135 -15.77006 -15.53354 -15.43664 -14.90891 -14.75615 -14.55673 -14.37731 -14.15252 -13.86663 -13.68425 -13.40239 -13.37879 -13.13847 -12.84049 -12.42237 -12.37600 -12.18134 -12.02580 -11.94398 -11.71326 -11.61181 -11.43610 -11.01165 -10.68116 -10.53163 -9.69058 -9.50780 -8.76874 -8.62359 -8.20888 -5.55782 0.59975 0.63660 0.89544 1.23881 1.38297 1.49715 1.60525 2.40044 2.94089 3.06937 3.52588 3.76451 3.88036 4.00821 4.07676 4.10727 4.18982 4.28098 4.32829 4.36468 4.42037 4.49761 4.55475 4.69214 4.72851 4.75937 4.81529 4.89712 4.91833 4.97800 5.05051 5.10925 5.13491 5.27682 5.29714 5.42167 5.54535 5.68399 5.71707 5.88502 6.00699 6.18790 6.28322 7.00670 7.64042 8.06259 8.98952 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015780 B = 0.005879 C = 0.004944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.022297 B = 4761.404818 C = 5661.992200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.008 4.008 3 Si 0.927 3.073 4 H -0.274 1.274 5 H -0.320 1.320 6 H -0.262 1.262 7 C -0.235 4.235 8 H 0.044 0.956 9 N -0.598 5.598 10 C 0.178 3.822 11 C -0.102 4.102 12 C -0.122 4.122 13 C -0.137 4.137 14 C -0.139 4.139 15 C -0.130 4.130 16 C -0.128 4.128 17 C 0.143 3.857 18 C -0.104 4.104 19 C -0.103 4.103 20 C -0.069 4.069 21 S -0.293 6.293 22 C -0.070 4.070 23 C -0.112 4.112 24 H 0.259 0.741 25 H 0.085 0.915 26 H 0.050 0.950 27 H 0.103 0.897 28 H 0.129 0.871 29 H 0.142 0.858 30 H 0.143 0.857 31 H 0.131 0.869 32 H 0.027 0.973 33 H 0.064 0.936 34 H 0.043 0.957 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.118 0.882 39 H 0.072 0.928 40 H 0.118 0.882 41 H 0.062 0.938 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.036 -2.123 -3.753 14.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.205 4.205 3 Si 0.757 3.243 4 H -0.202 1.202 5 H -0.250 1.250 6 H -0.186 1.186 7 C -0.366 4.366 8 H 0.061 0.939 9 N -0.319 5.319 10 C 0.054 3.946 11 C -0.105 4.105 12 C -0.141 4.141 13 C -0.155 4.155 14 C -0.157 4.157 15 C -0.148 4.148 16 C -0.147 4.147 17 C 0.018 3.982 18 C -0.125 4.125 19 C -0.142 4.142 20 C -0.217 4.217 21 S -0.067 6.067 22 C -0.218 4.218 23 C -0.152 4.152 24 H 0.068 0.932 25 H 0.103 0.897 26 H 0.068 0.932 27 H 0.121 0.879 28 H 0.147 0.853 29 H 0.159 0.841 30 H 0.161 0.839 31 H 0.149 0.851 32 H 0.045 0.955 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.136 0.864 39 H 0.091 0.909 40 H 0.136 0.864 41 H 0.081 0.919 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 14.427 -2.427 -4.691 15.364 hybrid contribution -1.374 1.427 1.409 2.431 sum 13.053 -0.999 -3.282 13.497 Atomic orbital electron populations 1.69984 1.07509 1.27005 1.54479 1.25908 0.95294 1.00245 0.99046 0.86148 0.79550 0.81419 0.77160 1.20159 1.24954 1.18595 1.18529 0.87852 0.92600 1.37581 0.93852 1.44212 1.06236 1.53348 1.28121 1.20206 0.91280 0.92046 0.91107 1.21012 0.94552 0.99166 0.95753 1.21140 0.98970 1.00225 0.93765 1.21379 0.96814 0.98105 0.99192 1.21369 0.95970 1.00102 0.98264 1.21420 1.00843 0.99415 0.93145 1.21256 0.95778 0.97995 0.99661 1.21226 0.97988 0.92998 0.85954 1.21506 0.99427 0.96483 0.95080 1.21696 0.99389 0.94819 0.98278 1.23432 1.04608 1.00805 0.92847 1.86562 1.73572 1.22876 1.23729 1.23389 1.00910 0.95601 1.01867 1.21699 1.02390 0.98396 0.92705 0.93157 0.89714 0.93208 0.87890 0.85291 0.84065 0.83919 0.85080 0.95506 0.91789 0.93840 0.90088 0.90278 0.91112 0.86424 0.90896 0.86378 0.91897 0.89520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.98 13.97 21.65 0.30 -57.68 16 2 C -0.01 -0.46 5.30 84.86 0.45 -0.01 16 3 Si 0.93 46.14 25.25 68.60 1.73 47.88 16 4 H -0.27 -12.91 6.54 99.48 0.65 -12.26 16 5 H -0.32 -16.65 7.11 99.48 0.71 -15.94 16 6 H -0.26 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.24 -12.52 9.88 84.03 0.83 -11.69 16 8 H 0.04 2.59 8.06 -2.91 -0.02 2.56 16 9 N -0.60 -25.43 1.81 -706.36 -1.28 -26.71 16 10 C 0.18 6.33 4.68 85.63 0.40 6.73 16 11 C -0.10 -3.63 5.44 -19.87 -0.11 -3.74 16 12 C -0.12 -4.52 9.72 22.27 0.22 -4.30 16 13 C -0.14 -4.36 10.05 22.27 0.22 -4.14 16 14 C -0.14 -3.87 10.05 22.27 0.22 -3.65 16 15 C -0.13 -3.58 10.05 22.27 0.22 -3.36 16 16 C -0.13 -3.94 9.68 22.27 0.22 -3.72 16 17 C 0.14 5.49 4.02 86.38 0.35 5.83 16 18 C -0.10 -3.46 2.12 -11.07 -0.02 -3.48 16 19 C -0.10 -2.82 4.59 30.49 0.14 -2.68 16 20 C -0.07 -1.75 6.45 72.01 0.46 -1.29 16 21 S -0.29 -7.59 22.33 -56.49 -1.26 -8.85 16 22 C -0.07 -1.78 6.45 72.01 0.46 -1.32 16 23 C -0.11 -3.15 5.05 30.49 0.15 -3.00 16 24 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 25 H 0.08 2.47 6.23 -2.39 -0.01 2.46 16 26 H 0.05 1.83 8.04 -2.39 -0.02 1.81 16 27 H 0.10 4.07 8.06 -2.91 -0.02 4.04 16 28 H 0.13 3.54 8.06 -2.91 -0.02 3.52 16 29 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 30 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 31 H 0.13 3.41 8.06 -2.91 -0.02 3.39 16 32 H 0.03 1.19 3.17 -2.38 -0.01 1.18 16 33 H 0.06 2.14 8.05 -2.39 -0.02 2.12 16 34 H 0.04 1.77 8.08 -2.39 -0.02 1.75 16 35 H 0.08 1.96 8.06 -2.38 -0.02 1.94 16 36 H 0.08 2.28 5.24 -2.39 -0.01 2.27 16 37 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 40 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.06 1.87 8.03 -2.39 -0.02 1.85 16 42 H 0.09 2.15 8.06 -2.39 -0.02 2.13 16 Total: -1.00 -63.68 339.84 4.64 -59.03 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 0.93 Total: 20.14 kcal Atomic # 6 Polarization: -38.04 SS G_CDS: 4.22 Total: -33.81 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -0.98 Total: -84.39 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.73 Total: 47.88 kcal Atomic # 16 Polarization: -7.59 SS G_CDS: -1.26 Total: -8.85 kcal Total: -63.68 4.64 -59.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207752124.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.472 kcal (2) G-P(sol) polarization free energy of solvation -63.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds