Wall clock time and date at job start Tue Mar 31 2020 06:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00239 * 2 1 4 4 H 1.09010 * 109.63401 * 29.59053 * 3 2 1 5 5 C 1.53004 * 109.64103 * 268.99814 * 3 2 1 6 6 C 1.50087 * 110.14057 * 190.71078 * 5 3 2 7 7 C 1.30524 * 123.93375 * 17.14584 * 6 5 3 8 8 N 1.38941 * 118.03440 * 179.55153 * 7 6 5 9 9 C 1.39804 * 119.99459 * 121.69456 * 8 7 6 10 10 C 1.39434 * 119.91923 * 351.51387 * 9 8 7 11 11 C 1.38349 * 120.46765 * 179.97438 * 10 9 8 12 12 C 1.38015 * 120.29009 * 0.02743 * 11 10 9 13 13 F 1.35099 * 120.09110 * 179.97438 * 12 11 10 14 14 C 1.41024 * 119.82485 * 359.97408 * 12 11 10 15 15 C 1.41295 * 120.22703 * 180.02562 * 14 12 11 16 16 H 1.07999 * 119.99601 * 25.43097 * 15 14 12 17 17 C 1.39907 * 119.99792 * 205.42571 * 15 14 12 18 18 N 1.30863 * 120.00081 * 15.59600 * 17 15 14 19 19 Si 1.86805 * 120.00125 * 195.58869 * 17 15 14 20 20 H 1.48494 * 109.46750 * 60.00259 * 19 17 15 21 21 H 1.48496 * 109.47025 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46896 * 300.00764 * 19 17 15 23 23 C 1.38193 * 119.91686 * 171.24216 * 9 8 7 24 24 C 1.50084 * 123.92730 * 359.54070 * 7 6 5 25 25 C 1.53012 * 110.14207 * 17.16566 * 24 7 6 26 26 H 1.09001 * 109.47221 * 300.00598 * 1 2 3 27 27 H 1.09006 * 109.46665 * 60.00007 * 1 2 3 28 28 H 1.08999 * 109.47086 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.35589 * 70.50884 * 5 3 2 30 30 H 1.08994 * 109.35549 * 310.91401 * 5 3 2 31 31 H 1.08008 * 118.02808 * 197.43300 * 6 5 3 32 32 H 0.96991 * 120.00489 * 301.69299 * 8 7 6 33 33 H 1.08004 * 119.76620 * 0.02562 * 10 9 8 34 34 H 1.07997 * 119.85651 * 180.02562 * 11 10 9 35 35 H 0.96997 * 119.99493 * 179.97438 * 18 17 15 36 36 H 1.07994 * 120.14688 * 0.02562 * 23 9 8 37 37 H 1.08997 * 109.35956 * 137.37106 * 24 7 6 38 38 H 1.08999 * 109.35227 * 256.96087 * 24 7 6 39 39 H 1.09000 * 109.63539 * 70.10020 * 25 24 7 40 40 H 1.08994 * 109.63693 * 190.50488 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3437 2.0032 0.5070 5 6 2.2425 1.7649 -1.4408 6 6 3.0831 3.0082 -1.4576 7 6 3.8006 3.4163 -0.4465 8 7 4.5413 4.5818 -0.5995 9 6 4.3309 5.6619 0.2627 10 6 3.2625 5.6390 1.1584 11 6 3.0441 6.7015 2.0171 12 6 3.8825 7.7975 1.9958 13 9 3.6651 8.8331 2.8358 14 6 4.9668 7.8337 1.0948 15 6 5.8308 8.9513 1.0662 16 1 5.9449 9.5683 1.9452 17 6 6.5385 9.2586 -0.1009 18 7 6.1870 8.7196 -1.2404 19 14 7.9852 10.4385 -0.0328 20 1 9.0215 9.8985 0.8834 21 1 8.5599 10.5961 -1.3930 22 1 7.5237 11.7592 0.4653 23 6 5.1856 6.7473 0.2291 24 6 3.8733 2.7022 0.8716 25 6 3.3628 1.2675 0.7224 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.2822 1.9717 -1.9133 30 1 2.7527 0.9763 -1.9937 31 1 3.0913 3.6032 -2.3589 32 1 5.2044 4.6460 -1.3045 33 1 2.6014 4.7853 1.1826 34 1 2.2138 6.6731 2.7072 35 1 6.6775 8.9330 -2.0496 36 1 6.0154 6.7631 -0.4619 37 1 4.9072 2.6838 1.2161 38 1 3.2603 3.2297 1.6024 39 1 4.0742 0.6846 0.1374 40 1 3.2427 0.8171 1.7076 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212886336.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:59 Heat of formation + Delta-G solvation = -63.828898 kcal Electronic energy + Delta-G solvation = -22805.845975 eV Core-core repulsion = 19306.461880 eV Total energy + Delta-G solvation = -3499.384094 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -47.11499 -39.56562 -38.05801 -36.51629 -34.25986 -33.27051 -30.79682 -29.76111 -29.38096 -27.17862 -25.91774 -25.37556 -23.14703 -22.05702 -21.26472 -20.28780 -18.22242 -17.36595 -16.77003 -16.48329 -15.98293 -15.71502 -15.26810 -14.94725 -14.78318 -14.11155 -13.93275 -13.79171 -13.31685 -13.24229 -13.01211 -12.57832 -12.38490 -12.21508 -12.11919 -11.73800 -11.57052 -11.48445 -11.36536 -11.16595 -11.03279 -10.83456 -10.65571 -10.52556 -10.19517 -9.56614 -9.49508 -9.41632 -9.11253 -8.26779 -7.57764 -6.88255 -6.29379 -4.46407 2.35537 2.72497 2.93333 3.03180 3.06921 3.18801 3.63113 3.88455 4.16559 4.54084 4.77463 4.81942 5.14583 5.18286 5.23242 5.30688 5.41328 5.49423 5.51688 5.58395 5.76020 5.79566 5.88718 5.97526 6.00529 6.07225 6.13099 6.24820 6.52125 6.54552 6.90168 6.91796 7.06643 7.11107 7.13814 7.26870 7.56344 7.65446 7.86724 7.99547 8.27121 8.51812 8.63116 8.73280 8.86770 10.09910 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.025946 B = 0.003661 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.917034 B = 7645.599458 C = 8339.729773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.086 3.914 4 H 0.065 0.935 5 C -0.089 4.089 6 C -0.217 4.217 7 C 0.149 3.851 8 N -0.710 5.710 9 C 0.201 3.799 10 C -0.270 4.270 11 C -0.094 4.094 12 C -0.057 4.057 13 F -0.167 7.167 14 C 0.115 3.885 15 C -0.453 4.453 16 H 0.082 0.918 17 C 0.077 3.923 18 N -0.789 5.789 19 Si 0.912 3.088 20 H -0.263 1.263 21 H -0.278 1.278 22 H -0.264 1.264 23 C -0.205 4.205 24 C -0.097 4.097 25 C -0.109 4.109 26 H 0.041 0.959 27 H 0.040 0.960 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.399 0.601 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.282 0.718 36 H 0.127 0.873 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.038 -12.779 -1.035 13.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C 0.029 3.971 4 H 0.083 0.917 5 C -0.127 4.127 6 C -0.239 4.239 7 C 0.054 3.946 8 N -0.338 5.338 9 C 0.104 3.896 10 C -0.292 4.292 11 C -0.114 4.114 12 C -0.078 4.078 13 F -0.146 7.146 14 C 0.111 3.889 15 C -0.482 4.482 16 H 0.100 0.900 17 C -0.141 4.141 18 N -0.414 5.414 19 Si 0.736 3.264 20 H -0.187 1.187 21 H -0.203 1.203 22 H -0.189 1.189 23 C -0.229 4.229 24 C -0.136 4.136 25 C -0.147 4.147 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.126 0.874 32 H 0.234 0.766 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.145 0.855 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.089 0.911 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.966 -12.937 -1.178 13.907 hybrid contribution 0.585 1.056 -0.385 1.268 sum -4.381 -11.880 -1.563 12.758 Atomic orbital electron populations 1.22766 0.81404 1.02378 1.00046 1.87884 1.19408 1.28231 1.95107 1.22260 0.95057 0.84014 0.95792 0.91667 1.20646 0.99276 0.95893 0.96908 1.21996 1.00581 1.00365 1.00954 1.18638 0.93293 0.87627 0.95013 1.42070 1.43540 1.11716 1.36449 1.17645 0.94369 0.87010 0.90548 1.19841 1.03058 1.01063 1.05235 1.20263 0.98330 0.93361 0.99447 1.17801 1.01453 0.87771 1.00749 1.91251 1.94896 1.58078 1.70407 1.17318 0.89382 0.92662 0.89500 1.19482 1.20774 1.09620 0.98340 0.89981 1.25900 0.97346 0.96291 0.94602 1.69829 1.35266 1.37064 0.99282 0.86292 0.81027 0.80800 0.78234 1.18709 1.20268 1.18851 1.20635 1.02267 0.92838 1.07126 1.20814 1.02879 0.93743 0.96146 1.21622 0.95423 0.96801 1.00862 0.94049 0.94106 0.89919 0.91433 0.90784 0.87443 0.76552 0.88143 0.88197 0.90757 0.85537 0.90081 0.89446 0.91128 0.90893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.83 101.05 1.09 1.37 16 2 O -0.39 -4.60 10.36 -35.23 -0.37 -4.97 16 3 C 0.09 1.03 2.66 -26.53 -0.07 0.96 16 4 H 0.07 0.79 7.77 -51.92 -0.40 0.38 16 5 C -0.09 -1.07 5.75 -28.18 -0.16 -1.23 16 6 C -0.22 -3.09 9.62 -36.19 -0.35 -3.44 16 7 C 0.15 2.33 5.01 -81.25 -0.41 1.92 16 8 N -0.71 -12.92 5.28 -7.45 -0.04 -12.96 16 9 C 0.20 4.41 6.46 -83.79 -0.54 3.87 16 10 C -0.27 -5.79 8.55 -39.10 -0.33 -6.12 16 11 C -0.09 -2.14 10.00 -39.62 -0.40 -2.54 16 12 C -0.06 -1.46 7.31 -38.61 -0.28 -1.74 16 13 F -0.17 -4.29 16.72 2.25 0.04 -4.25 16 14 C 0.12 3.08 5.57 -106.78 -0.59 2.49 16 15 C -0.45 -12.13 8.78 -37.80 -0.33 -12.46 16 16 H 0.08 2.18 7.73 -52.49 -0.41 1.77 16 17 C 0.08 1.91 5.18 -17.34 -0.09 1.82 16 18 N -0.79 -19.80 10.90 55.55 0.61 -19.19 16 19 Si 0.91 18.54 29.59 -169.99 -5.03 13.51 16 20 H -0.26 -5.29 7.11 56.52 0.40 -4.88 16 21 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 22 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 23 C -0.21 -5.10 8.52 -38.70 -0.33 -5.42 16 24 C -0.10 -1.37 5.33 -28.17 -0.15 -1.52 16 25 C -0.11 -1.30 5.66 -26.53 -0.15 -1.45 16 26 H 0.04 0.34 8.09 -51.93 -0.42 -0.08 16 27 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.11 1.58 8.05 -52.48 -0.42 1.15 16 32 H 0.40 6.85 8.84 -40.82 -0.36 6.49 16 33 H 0.10 1.93 5.39 -52.48 -0.28 1.65 16 34 H 0.10 2.01 8.06 -52.49 -0.42 1.59 16 35 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 36 H 0.13 3.20 6.16 -52.49 -0.32 2.88 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.09 1.29 5.87 -51.93 -0.30 0.99 16 39 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 330.63 15.07 4.98 4.98 Total: -1.00 -27.63 330.63 -8.34 -35.97 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -5.44 Total: 10.41 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: -3.09 Total: -23.51 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: 0.57 Total: -32.15 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.37 Total: -4.97 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.04 Total: -4.25 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.63 -8.34 -35.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212886336.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.856 kcal (2) G-P(sol) polarization free energy of solvation -27.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds