Wall clock time and date at job start Tue Mar 31 2020 06:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00239 * 2 1 4 4 H 1.09010 * 109.63401 * 29.59053 * 3 2 1 5 5 C 1.53004 * 109.64103 * 268.99814 * 3 2 1 6 6 C 1.50087 * 110.14057 * 190.71078 * 5 3 2 7 7 C 1.30524 * 123.93375 * 17.14584 * 6 5 3 8 8 N 1.38941 * 118.03440 * 179.55153 * 7 6 5 9 9 C 1.39804 * 119.99459 * 121.69456 * 8 7 6 10 10 C 1.39434 * 119.91923 * 351.51387 * 9 8 7 11 11 C 1.38349 * 120.46765 * 179.97438 * 10 9 8 12 12 C 1.38015 * 120.29009 * 0.02743 * 11 10 9 13 13 F 1.35099 * 120.09110 * 179.97438 * 12 11 10 14 14 C 1.41024 * 119.82485 * 359.97408 * 12 11 10 15 15 C 1.41295 * 120.22703 * 180.02562 * 14 12 11 16 16 H 1.07999 * 119.99601 * 25.43097 * 15 14 12 17 17 C 1.39907 * 119.99792 * 205.42571 * 15 14 12 18 18 N 1.30863 * 120.00081 * 15.59600 * 17 15 14 19 19 Si 1.86805 * 120.00125 * 195.58869 * 17 15 14 20 20 H 1.48494 * 109.46750 * 60.00259 * 19 17 15 21 21 H 1.48496 * 109.47025 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46896 * 300.00764 * 19 17 15 23 23 C 1.38193 * 119.91686 * 171.24216 * 9 8 7 24 24 C 1.50084 * 123.92730 * 359.54070 * 7 6 5 25 25 C 1.53012 * 110.14207 * 17.16566 * 24 7 6 26 26 H 1.09001 * 109.47221 * 300.00598 * 1 2 3 27 27 H 1.09006 * 109.46665 * 60.00007 * 1 2 3 28 28 H 1.08999 * 109.47086 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.35589 * 70.50884 * 5 3 2 30 30 H 1.08994 * 109.35549 * 310.91401 * 5 3 2 31 31 H 1.08008 * 118.02808 * 197.43300 * 6 5 3 32 32 H 0.96991 * 120.00489 * 301.69299 * 8 7 6 33 33 H 1.08004 * 119.76620 * 0.02562 * 10 9 8 34 34 H 1.07997 * 119.85651 * 180.02562 * 11 10 9 35 35 H 0.96997 * 119.99493 * 179.97438 * 18 17 15 36 36 H 1.07994 * 120.14688 * 0.02562 * 23 9 8 37 37 H 1.08997 * 109.35956 * 137.37106 * 24 7 6 38 38 H 1.08999 * 109.35227 * 256.96087 * 24 7 6 39 39 H 1.09000 * 109.63539 * 70.10020 * 25 24 7 40 40 H 1.08994 * 109.63693 * 190.50488 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3437 2.0032 0.5070 5 6 2.2425 1.7649 -1.4408 6 6 3.0831 3.0082 -1.4576 7 6 3.8006 3.4163 -0.4465 8 7 4.5413 4.5818 -0.5995 9 6 4.3309 5.6619 0.2627 10 6 3.2625 5.6390 1.1584 11 6 3.0441 6.7015 2.0171 12 6 3.8825 7.7975 1.9958 13 9 3.6651 8.8331 2.8358 14 6 4.9668 7.8337 1.0948 15 6 5.8308 8.9513 1.0662 16 1 5.9449 9.5683 1.9452 17 6 6.5385 9.2586 -0.1009 18 7 6.1870 8.7196 -1.2404 19 14 7.9852 10.4385 -0.0328 20 1 9.0215 9.8985 0.8834 21 1 8.5599 10.5961 -1.3930 22 1 7.5237 11.7592 0.4653 23 6 5.1856 6.7473 0.2291 24 6 3.8733 2.7022 0.8716 25 6 3.3628 1.2675 0.7224 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.2822 1.9717 -1.9133 30 1 2.7527 0.9763 -1.9937 31 1 3.0913 3.6032 -2.3589 32 1 5.2044 4.6460 -1.3045 33 1 2.6014 4.7853 1.1826 34 1 2.2138 6.6731 2.7072 35 1 6.6775 8.9330 -2.0496 36 1 6.0154 6.7631 -0.4619 37 1 4.9072 2.6838 1.2161 38 1 3.2603 3.2297 1.6024 39 1 4.0742 0.6846 0.1374 40 1 3.2427 0.8171 1.7076 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212886336.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:59 Heat of formation + Delta-G solvation = -77.885174 kcal Electronic energy + Delta-G solvation = -22806.455500 eV Core-core repulsion = 19306.461880 eV Total energy + Delta-G solvation = -3499.993620 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.07399 -40.76769 -39.42180 -37.86081 -35.83970 -34.85374 -31.94615 -31.55823 -30.74717 -28.40166 -27.24887 -26.94515 -24.26729 -23.46580 -22.77545 -21.95601 -19.62682 -18.91786 -18.10167 -17.77105 -17.72965 -17.12381 -16.68928 -16.17146 -16.02388 -15.87673 -15.57292 -14.99431 -14.73885 -14.39376 -14.28144 -14.14928 -13.81396 -13.48884 -13.38228 -13.25859 -13.15006 -12.96488 -12.84802 -12.69912 -12.34444 -12.10860 -12.02737 -11.79087 -11.55745 -11.29327 -11.17980 -10.73736 -10.42177 -9.64131 -9.46171 -8.72135 -7.97540 -6.43648 0.85309 0.95089 1.32500 1.36688 1.47829 1.54117 2.19030 2.64516 2.70224 2.89248 3.58203 3.76982 3.88568 4.14298 4.18438 4.20234 4.32388 4.39912 4.49910 4.56896 4.60512 4.68128 4.75845 4.79076 4.92928 4.94775 4.95655 5.03474 5.08702 5.12078 5.22293 5.25664 5.36236 5.51615 5.76246 5.82084 5.93207 6.05577 6.10856 6.30243 6.44061 6.76237 6.81130 6.99926 7.08011 8.27270 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.025946 B = 0.003661 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.917034 B = 7645.599458 C = 8339.729773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.401 6.401 3 C 0.088 3.912 4 H 0.066 0.934 5 C -0.087 4.087 6 C -0.193 4.193 7 C 0.121 3.879 8 N -0.705 5.705 9 C 0.213 3.787 10 C -0.261 4.261 11 C -0.088 4.088 12 C -0.098 4.098 13 F -0.176 7.176 14 C 0.088 3.912 15 C -0.496 4.496 16 H 0.068 0.932 17 C 0.041 3.959 18 N -0.814 5.814 19 Si 0.983 3.017 20 H -0.260 1.260 21 H -0.261 1.261 22 H -0.264 1.264 23 C -0.227 4.227 24 C -0.091 4.091 25 C -0.103 4.103 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.401 0.599 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.291 0.709 36 H 0.115 0.885 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.816 -14.591 -1.695 15.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.320 6.320 3 C 0.031 3.969 4 H 0.084 0.916 5 C -0.125 4.125 6 C -0.215 4.215 7 C 0.027 3.973 8 N -0.332 5.332 9 C 0.114 3.886 10 C -0.284 4.284 11 C -0.107 4.107 12 C -0.119 4.119 13 F -0.155 7.155 14 C 0.084 3.916 15 C -0.525 4.525 16 H 0.087 0.913 17 C -0.176 4.176 18 N -0.439 5.439 19 Si 0.803 3.197 20 H -0.184 1.184 21 H -0.185 1.185 22 H -0.188 1.188 23 C -0.251 4.251 24 C -0.129 4.129 25 C -0.141 4.141 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.117 0.883 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.121 0.879 32 H 0.237 0.763 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.101 0.899 36 H 0.132 0.868 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.770 -14.802 -1.856 15.995 hybrid contribution 0.684 1.429 -0.260 1.605 sum -5.086 -13.374 -2.116 14.464 Atomic orbital electron populations 1.22975 0.79876 1.03768 1.00676 1.87864 1.21097 1.27873 1.95165 1.22190 0.94988 0.84349 0.95421 0.91633 1.20685 0.99485 0.94847 0.97525 1.22196 0.98946 1.00449 0.99888 1.18896 0.94549 0.87303 0.96541 1.42074 1.43806 1.11684 1.35616 1.17715 0.93418 0.87085 0.90418 1.20165 1.02801 1.01352 1.04044 1.20592 0.98169 0.92400 0.99576 1.18124 1.02830 0.89000 1.01922 1.91207 1.95005 1.58648 1.70659 1.17679 0.90017 0.93381 0.90488 1.19645 1.23174 1.10639 0.99008 0.91342 1.26678 0.99380 0.97839 0.93656 1.69858 1.36197 1.37988 0.99848 0.85246 0.77346 0.78203 0.78903 1.18394 1.18502 1.18846 1.20556 1.03155 0.93807 1.07540 1.20727 1.02483 0.94836 0.94888 1.21561 0.95592 0.95267 1.01656 0.93481 0.93406 0.88278 0.90049 0.89877 0.87862 0.76255 0.85282 0.85409 0.89872 0.86760 0.90780 0.90147 0.90883 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.83 113.37 1.23 1.57 16 2 O -0.40 -8.28 10.36 -148.98 -1.54 -9.82 16 3 C 0.09 1.84 2.66 30.72 0.08 1.92 16 4 H 0.07 1.37 7.77 -2.38 -0.02 1.35 16 5 C -0.09 -1.82 5.75 29.66 0.17 -1.65 16 6 C -0.19 -5.01 9.62 25.94 0.25 -4.76 16 7 C 0.12 3.53 5.01 41.69 0.21 3.74 16 8 N -0.71 -25.07 5.28 -177.49 -0.94 -26.00 16 9 C 0.21 9.30 6.46 38.15 0.25 9.55 16 10 C -0.26 -10.88 8.55 22.58 0.19 -10.69 16 11 C -0.09 -3.94 10.00 22.24 0.22 -3.72 16 12 C -0.10 -5.16 7.31 22.90 0.17 -4.99 16 13 F -0.18 -9.35 16.72 44.97 0.75 -8.60 16 14 C 0.09 4.89 5.57 -21.26 -0.12 4.78 16 15 C -0.50 -27.77 8.78 23.43 0.21 -27.57 16 16 H 0.07 3.85 7.73 -2.91 -0.02 3.83 16 17 C 0.04 2.05 5.18 85.24 0.44 2.50 16 18 N -0.81 -41.70 10.90 21.82 0.24 -41.46 16 19 Si 0.98 38.58 29.59 68.60 2.03 40.61 16 20 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 21 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 22 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 23 C -0.23 -11.58 8.52 22.84 0.19 -11.39 16 24 C -0.09 -2.37 5.33 29.66 0.16 -2.21 16 25 C -0.10 -2.19 5.66 30.73 0.17 -2.02 16 26 H 0.05 0.64 8.09 -2.39 -0.02 0.62 16 27 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.10 2.80 8.05 -2.91 -0.02 2.77 16 32 H 0.40 13.67 8.84 -92.71 -0.82 12.85 16 33 H 0.13 4.61 5.39 -2.91 -0.02 4.60 16 34 H 0.13 4.91 8.06 -2.91 -0.02 4.88 16 35 H 0.29 13.37 8.30 -92.71 -0.77 12.60 16 36 H 0.11 6.02 6.16 -2.91 -0.02 6.00 16 37 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.08 2.20 5.87 -2.39 -0.01 2.18 16 39 H 0.07 1.53 8.12 -2.39 -0.02 1.51 16 40 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -60.78 330.63 4.60 -56.17 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: 0.24 Total: 34.07 kcal Atomic # 6 Polarization: -48.78 SS G_CDS: 3.82 Total: -44.96 kcal Atomic # 7 Polarization: -66.77 SS G_CDS: -0.70 Total: -67.47 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: -1.54 Total: -9.82 kcal Atomic # 9 Polarization: -9.35 SS G_CDS: 0.75 Total: -8.60 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.61 kcal Total: -60.78 4.60 -56.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212886336.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.711 kcal (2) G-P(sol) polarization free energy of solvation -60.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds