Wall clock time and date at job start Tue Mar 31 2020 06:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21283 * 119.99457 * 2 1 4 4 N 1.34765 * 119.99783 * 180.02562 * 2 1 3 5 5 C 1.39583 * 119.99861 * 180.02562 * 4 2 1 6 6 N 1.32277 * 119.72721 * 0.26492 * 5 4 2 7 7 C 1.31951 * 121.69271 * 180.31140 * 6 5 4 8 8 C 1.38094 * 120.95069 * 359.70648 * 7 6 5 9 9 C 1.38772 * 119.35791 * 359.97438 * 8 7 6 10 10 C 1.38803 * 118.44503 * 359.97438 * 9 8 7 11 11 O 1.35982 * 120.49694 * 180.02562 * 10 9 8 12 12 C 1.42904 * 116.99748 * 0.02562 * 11 10 9 13 13 H 1.08998 * 110.77947 * 328.21185 * 12 11 10 14 14 C 1.55158 * 110.71496 * 204.97793 * 12 11 10 15 15 C 1.55137 * 101.48321 * 205.96593 * 14 12 11 16 16 N 1.47434 * 104.71970 * 37.29493 * 15 14 12 17 17 C 1.36931 * 125.64526 * 155.81715 * 16 15 14 18 18 H 1.08002 * 120.00103 * 179.69487 * 17 16 15 19 19 C 1.38812 * 120.00429 * 359.68990 * 17 16 15 20 20 N 1.31624 * 119.99535 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00484 * 179.97438 * 19 17 16 22 22 H 1.48490 * 109.47339 * 180.02562 * 21 19 17 23 23 H 1.48493 * 109.47239 * 300.00542 * 21 19 17 24 24 H 1.48504 * 109.46636 * 60.00101 * 21 19 17 25 25 C 1.47017 * 108.70092 * 335.55455 * 16 15 14 26 26 H 1.09000 * 109.47397 * 239.99718 * 1 2 3 27 27 H 1.09004 * 109.47238 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.47409 * 119.99544 * 1 2 3 29 29 H 0.97005 * 120.00708 * 359.97438 * 4 2 1 30 30 H 1.07994 * 119.52667 * 179.72527 * 7 6 5 31 31 H 1.08005 * 120.32173 * 180.02562 * 8 7 6 32 32 H 1.08000 * 120.77853 * 180.02562 * 9 8 7 33 33 H 1.09001 * 111.00555 * 324.20236 * 14 12 11 34 34 H 1.08996 * 111.00773 * 88.02357 * 14 12 11 35 35 H 1.08990 * 110.49672 * 278.45593 * 15 14 12 36 36 H 1.08998 * 110.34357 * 156.05816 * 15 14 12 37 37 H 0.97005 * 119.99717 * 179.97438 * 20 19 17 38 38 H 1.08999 * 109.88360 * 120.71034 * 25 16 15 39 39 H 1.09008 * 109.87914 * 241.71497 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1808 -1.1671 -0.0005 5 6 3.5766 -1.1671 0.0000 6 7 4.2326 -0.0185 0.0064 7 6 5.5513 0.0268 0.0010 8 6 6.3017 -1.1324 -0.0054 9 6 5.6561 -2.3608 -0.0057 10 6 4.2682 -2.3783 0.0010 11 8 3.5929 -3.5586 0.0016 12 6 4.3759 -4.7540 -0.0046 13 1 5.3099 -4.6017 -0.5453 14 6 3.5734 -5.9326 -0.6163 15 6 4.2493 -7.1523 0.0635 16 7 4.5448 -6.7003 1.4354 17 6 4.7005 -7.5123 2.5270 18 1 4.9212 -7.0822 3.4928 19 6 4.5745 -8.8881 2.3923 20 7 4.3059 -9.4122 1.2152 21 14 4.7876 -9.9958 3.8813 22 1 4.6057 -11.4123 3.4745 23 1 6.1501 -9.8136 4.4429 24 1 3.7767 -9.6419 4.9100 25 6 4.6510 -5.2340 1.4360 26 1 -0.3634 -0.5139 0.8899 27 1 -0.3634 1.0277 0.0005 28 1 -0.3634 -0.5138 -0.8901 29 1 1.6959 -2.0073 -0.0005 30 1 6.0510 0.9842 0.0020 31 1 7.3807 -1.0835 -0.0094 32 1 6.2203 -3.2817 -0.0103 33 1 2.5186 -5.8672 -0.3495 34 1 3.6989 -5.9708 -1.6984 35 1 5.1705 -7.4165 -0.4555 36 1 3.5666 -8.0018 0.0828 37 1 4.2182 -10.3737 1.1210 38 1 3.9124 -4.8091 2.1158 39 1 5.6530 -4.9350 1.7438 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226151196.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:41 Heat of formation + Delta-G solvation = 9.933120 kcal Electronic energy + Delta-G solvation = -23029.846967 eV Core-core repulsion = 19553.581395 eV Total energy + Delta-G solvation = -3476.265572 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.03513 -39.40867 -38.37143 -36.34791 -34.86654 -32.44942 -31.84660 -30.61607 -29.42735 -28.69983 -27.50795 -24.85730 -23.80204 -23.00349 -20.79597 -20.38471 -20.12009 -18.59350 -17.61247 -17.21423 -17.00178 -15.81108 -15.73566 -15.22404 -15.05552 -14.78661 -14.40222 -14.13412 -13.90131 -13.54757 -13.14126 -12.85783 -12.77366 -12.57703 -12.35821 -12.20865 -11.86210 -11.48611 -11.09744 -10.85251 -10.81877 -10.64779 -10.46942 -10.30974 -10.19642 -9.93293 -9.70535 -9.32742 -9.15593 -8.76467 -7.82186 -6.98040 -5.76532 -3.19431 1.08745 1.30103 2.62476 2.83451 3.16540 3.35121 3.39573 3.40832 3.88350 4.34702 4.40088 4.66733 4.80175 4.88249 4.99974 5.12510 5.17148 5.18431 5.21262 5.32887 5.40203 5.47632 5.59961 5.64510 5.90870 6.07339 6.11709 6.22574 6.29530 6.34451 6.37857 6.49026 6.65092 7.16386 7.32057 7.42354 7.50380 7.71094 7.94393 8.22459 8.25269 9.09712 9.69948 10.32268 11.27545 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.022915 B = 0.003605 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.595089 B = 7765.087841 C = 8266.304732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.500 3.500 3 O -0.488 6.488 4 N -0.654 5.654 5 C 0.330 3.670 6 N -0.444 5.444 7 C 0.080 3.920 8 C -0.159 4.159 9 C -0.144 4.144 10 C 0.063 3.937 11 O -0.304 6.304 12 C 0.070 3.930 13 H 0.079 0.921 14 C -0.135 4.135 15 C 0.152 3.848 16 N -0.600 5.600 17 C -0.227 4.227 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.923 5.923 21 Si 0.917 3.083 22 H -0.289 1.289 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.120 3.880 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.423 0.577 30 H 0.158 0.842 31 H 0.136 0.864 32 H 0.147 0.853 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.017 0.983 36 H 0.115 0.885 37 H 0.254 0.746 38 H 0.035 0.965 39 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.917 14.400 -5.357 15.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.287 3.713 3 O -0.358 6.358 4 N -0.303 5.303 5 C 0.098 3.902 6 N -0.159 5.159 7 C -0.077 4.077 8 C -0.180 4.180 9 C -0.171 4.171 10 C 0.012 3.988 11 O -0.216 6.216 12 C 0.013 3.987 13 H 0.097 0.903 14 C -0.174 4.174 15 C 0.027 3.973 16 N -0.328 5.328 17 C -0.355 4.355 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.571 5.571 21 Si 0.748 3.252 22 H -0.214 1.214 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.006 4.006 26 H 0.109 0.891 27 H 0.113 0.887 28 H 0.108 0.892 29 H 0.261 0.739 30 H 0.175 0.825 31 H 0.154 0.846 32 H 0.164 0.836 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.035 0.965 36 H 0.133 0.867 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -3.275 15.700 -5.291 16.888 hybrid contribution 0.767 -1.905 0.775 2.195 sum -2.509 13.795 -4.515 14.730 Atomic orbital electron populations 1.21934 0.90913 1.05712 1.04612 1.21038 0.90630 0.83291 0.76385 1.90810 1.70138 1.30450 1.44388 1.43589 1.03387 1.10925 1.72399 1.17842 0.84885 0.87004 1.00499 1.67652 1.10101 1.24666 1.13528 1.22471 0.88218 0.98571 0.98426 1.21919 1.01461 0.92332 1.02307 1.21641 0.92643 1.00082 1.02710 1.19514 0.91554 0.86257 1.01469 1.86088 1.35814 1.11736 1.87967 1.23741 0.94749 0.81638 0.98530 0.90312 1.23260 1.00441 0.94501 0.99209 1.22068 0.98254 0.94116 0.82854 1.44360 1.83698 0.98886 1.05817 1.19036 1.41418 0.87666 0.87352 0.90403 1.24794 1.01841 0.96506 0.97235 1.69733 1.55207 1.10919 1.21263 0.86109 0.78013 0.79654 0.81469 1.21447 1.21128 1.21035 1.21655 0.98332 0.87454 0.93208 0.89104 0.88699 0.89169 0.73936 0.82453 0.84574 0.83550 0.90708 0.91477 0.96503 0.86712 0.93480 0.94703 0.95663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 10.32 36.01 0.37 -0.91 16 2 C 0.50 6.36 7.90 -10.99 -0.09 6.27 16 3 O -0.49 -8.25 15.34 5.55 0.09 -8.16 16 4 N -0.65 -8.40 5.39 -11.29 -0.06 -8.46 16 5 C 0.33 5.02 7.45 -154.43 -1.15 3.87 16 6 N -0.44 -7.05 7.88 -12.22 -0.10 -7.15 16 7 C 0.08 1.02 11.17 -17.55 -0.20 0.83 16 8 C -0.16 -1.85 10.10 -39.44 -0.40 -2.25 16 9 C -0.14 -1.93 9.12 -39.17 -0.36 -2.29 16 10 C 0.06 0.94 6.72 -38.91 -0.26 0.67 16 11 O -0.30 -4.72 9.11 -19.68 -0.18 -4.90 16 12 C 0.07 1.17 2.84 -24.90 -0.07 1.10 16 13 H 0.08 1.21 5.96 -51.93 -0.31 0.90 16 14 C -0.14 -2.41 6.82 -24.46 -0.17 -2.57 16 15 C 0.15 3.48 5.91 -2.40 -0.01 3.46 16 16 N -0.60 -14.86 3.39 -169.93 -0.58 -15.43 16 17 C -0.23 -6.16 10.27 -15.06 -0.15 -6.31 16 18 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 19 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 20 N -0.92 -25.89 10.08 55.49 0.56 -25.33 16 21 Si 0.92 21.47 29.55 -169.99 -5.02 16.44 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C 0.12 2.44 7.01 -3.07 -0.02 2.42 16 26 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.09 0.68 8.12 -51.93 -0.42 0.26 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.42 4.47 8.05 -40.82 -0.33 4.14 16 30 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 31 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 32 H 0.15 1.86 6.00 -52.49 -0.31 1.54 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.12 2.96 5.86 -51.93 -0.30 2.66 16 37 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 38 H 0.04 0.74 8.06 -51.93 -0.42 0.32 16 39 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 LS Contribution 326.33 15.07 4.92 4.92 Total: -1.00 -33.13 326.33 -8.00 -41.13 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -5.02 Total: 2.98 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -2.60 Total: 3.97 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.17 Total: -56.37 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.09 Total: -13.07 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.13 -8.00 -41.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226151196.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.061 kcal (2) G-P(sol) polarization free energy of solvation -33.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds