Wall clock time and date at job start Tue Mar 31 2020 06:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21283 * 119.99457 * 2 1 4 4 N 1.34765 * 119.99783 * 180.02562 * 2 1 3 5 5 C 1.39583 * 119.99861 * 180.02562 * 4 2 1 6 6 N 1.32277 * 119.72721 * 0.26492 * 5 4 2 7 7 C 1.31951 * 121.69271 * 180.31140 * 6 5 4 8 8 C 1.38094 * 120.95069 * 359.70648 * 7 6 5 9 9 C 1.38772 * 119.35791 * 359.97438 * 8 7 6 10 10 C 1.38803 * 118.44503 * 359.97438 * 9 8 7 11 11 O 1.35982 * 120.49694 * 180.02562 * 10 9 8 12 12 C 1.42904 * 116.99748 * 0.02562 * 11 10 9 13 13 H 1.08998 * 110.77947 * 328.21185 * 12 11 10 14 14 C 1.55158 * 110.71496 * 204.97793 * 12 11 10 15 15 C 1.55137 * 101.48321 * 205.96593 * 14 12 11 16 16 N 1.47434 * 104.71970 * 37.29493 * 15 14 12 17 17 C 1.36931 * 125.64526 * 155.81715 * 16 15 14 18 18 H 1.08002 * 120.00103 * 179.69487 * 17 16 15 19 19 C 1.38812 * 120.00429 * 359.68990 * 17 16 15 20 20 N 1.31624 * 119.99535 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00484 * 179.97438 * 19 17 16 22 22 H 1.48490 * 109.47339 * 180.02562 * 21 19 17 23 23 H 1.48493 * 109.47239 * 300.00542 * 21 19 17 24 24 H 1.48504 * 109.46636 * 60.00101 * 21 19 17 25 25 C 1.47017 * 108.70092 * 335.55455 * 16 15 14 26 26 H 1.09000 * 109.47397 * 239.99718 * 1 2 3 27 27 H 1.09004 * 109.47238 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.47409 * 119.99544 * 1 2 3 29 29 H 0.97005 * 120.00708 * 359.97438 * 4 2 1 30 30 H 1.07994 * 119.52667 * 179.72527 * 7 6 5 31 31 H 1.08005 * 120.32173 * 180.02562 * 8 7 6 32 32 H 1.08000 * 120.77853 * 180.02562 * 9 8 7 33 33 H 1.09001 * 111.00555 * 324.20236 * 14 12 11 34 34 H 1.08996 * 111.00773 * 88.02357 * 14 12 11 35 35 H 1.08990 * 110.49672 * 278.45593 * 15 14 12 36 36 H 1.08998 * 110.34357 * 156.05816 * 15 14 12 37 37 H 0.97005 * 119.99717 * 179.97438 * 20 19 17 38 38 H 1.08999 * 109.88360 * 120.71034 * 25 16 15 39 39 H 1.09008 * 109.87914 * 241.71497 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1808 -1.1671 -0.0005 5 6 3.5766 -1.1671 0.0000 6 7 4.2326 -0.0185 0.0064 7 6 5.5513 0.0268 0.0010 8 6 6.3017 -1.1324 -0.0054 9 6 5.6561 -2.3608 -0.0057 10 6 4.2682 -2.3783 0.0010 11 8 3.5929 -3.5586 0.0016 12 6 4.3759 -4.7540 -0.0046 13 1 5.3099 -4.6017 -0.5453 14 6 3.5734 -5.9326 -0.6163 15 6 4.2493 -7.1523 0.0635 16 7 4.5448 -6.7003 1.4354 17 6 4.7005 -7.5123 2.5270 18 1 4.9212 -7.0822 3.4928 19 6 4.5745 -8.8881 2.3923 20 7 4.3059 -9.4122 1.2152 21 14 4.7876 -9.9958 3.8813 22 1 4.6057 -11.4123 3.4745 23 1 6.1501 -9.8136 4.4429 24 1 3.7767 -9.6419 4.9100 25 6 4.6510 -5.2340 1.4360 26 1 -0.3634 -0.5139 0.8899 27 1 -0.3634 1.0277 0.0005 28 1 -0.3634 -0.5138 -0.8901 29 1 1.6959 -2.0073 -0.0005 30 1 6.0510 0.9842 0.0020 31 1 7.3807 -1.0835 -0.0094 32 1 6.2203 -3.2817 -0.0103 33 1 2.5186 -5.8672 -0.3495 34 1 3.6989 -5.9708 -1.6984 35 1 5.1705 -7.4165 -0.4555 36 1 3.5666 -8.0018 0.0828 37 1 4.2182 -10.3737 1.1210 38 1 3.9124 -4.8091 2.1158 39 1 5.6530 -4.9350 1.7438 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226151196.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:41 Heat of formation + Delta-G solvation = -11.781883 kcal Electronic energy + Delta-G solvation = -23030.788600 eV Core-core repulsion = 19553.581395 eV Total energy + Delta-G solvation = -3477.207205 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.10135 -40.54518 -39.58207 -37.89743 -35.91764 -34.31659 -32.88696 -31.67940 -31.02224 -29.67070 -29.06481 -26.63462 -24.99349 -24.07779 -22.16399 -22.00157 -21.30623 -19.69874 -19.06005 -18.60404 -18.17440 -17.02781 -16.86126 -16.69450 -16.37565 -16.02056 -15.67882 -15.55930 -14.99327 -14.83285 -14.41065 -14.31805 -14.08626 -13.61982 -13.41611 -13.31092 -13.05907 -12.95819 -12.95059 -12.63022 -12.24560 -12.07654 -11.90624 -11.83644 -11.76504 -11.39775 -11.35042 -10.77158 -10.42230 -10.19126 -8.96096 -8.87749 -7.80703 -5.26121 0.07448 0.24947 1.47843 1.50028 1.56605 1.68379 1.92014 1.93866 2.48785 2.85299 3.30193 3.43201 3.55523 3.64282 3.74607 3.86599 3.90784 3.98773 4.09951 4.19515 4.40561 4.55397 4.59038 4.66111 4.67164 4.85135 4.89312 4.95151 4.98875 5.08814 5.13225 5.27733 5.42889 5.52536 5.57753 5.75509 6.22565 6.25490 6.28943 6.94261 7.07158 7.30285 7.72403 8.34234 9.20702 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.022915 B = 0.003605 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.595089 B = 7765.087841 C = 8266.304732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.494 3.506 3 O -0.537 6.537 4 N -0.652 5.652 5 C 0.312 3.688 6 N -0.477 5.477 7 C 0.075 3.925 8 C -0.147 4.147 9 C -0.148 4.148 10 C 0.044 3.956 11 O -0.303 6.303 12 C 0.088 3.912 13 H 0.099 0.901 14 C -0.121 4.121 15 C 0.153 3.847 16 N -0.622 5.622 17 C -0.246 4.246 18 H 0.078 0.922 19 C -0.059 4.059 20 N -0.945 5.945 21 Si 0.980 3.020 22 H -0.291 1.291 23 H -0.279 1.279 24 H -0.278 1.278 25 C 0.118 3.882 26 H 0.111 0.889 27 H 0.098 0.902 28 H 0.114 0.886 29 H 0.432 0.568 30 H 0.184 0.816 31 H 0.172 0.828 32 H 0.155 0.845 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.001 0.999 36 H 0.082 0.918 37 H 0.250 0.750 38 H 0.025 0.975 39 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.692 15.243 -5.520 16.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.283 3.717 3 O -0.411 6.411 4 N -0.301 5.301 5 C 0.080 3.920 6 N -0.193 5.193 7 C -0.082 4.082 8 C -0.168 4.168 9 C -0.175 4.175 10 C -0.006 4.006 11 O -0.215 6.215 12 C 0.031 3.969 13 H 0.117 0.883 14 C -0.159 4.159 15 C 0.028 3.972 16 N -0.350 5.350 17 C -0.375 4.375 18 H 0.096 0.904 19 C -0.252 4.252 20 N -0.594 5.594 21 Si 0.808 3.192 22 H -0.217 1.217 23 H -0.205 1.205 24 H -0.204 1.204 25 C -0.008 4.008 26 H 0.129 0.871 27 H 0.116 0.884 28 H 0.132 0.868 29 H 0.271 0.729 30 H 0.201 0.799 31 H 0.190 0.810 32 H 0.172 0.828 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.019 0.981 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.043 0.957 39 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -3.071 16.552 -5.457 17.696 hybrid contribution 0.757 -2.077 0.838 2.364 sum -2.314 14.475 -4.619 15.369 Atomic orbital electron populations 1.21961 0.86732 1.06659 1.06675 1.21999 0.92530 0.82395 0.74750 1.90777 1.71536 1.31985 1.46808 1.43716 1.02866 1.11595 1.71919 1.18091 0.85914 0.87030 1.00960 1.67699 1.11663 1.25275 1.14644 1.23035 0.87605 1.00297 0.97214 1.22261 1.03140 0.91091 1.00288 1.21879 0.92185 1.01194 1.02200 1.19612 0.92291 0.85676 1.03016 1.86058 1.35512 1.11584 1.88393 1.23427 0.95475 0.81969 0.96021 0.88288 1.23052 0.99916 0.92393 1.00533 1.21852 0.97108 0.95511 0.82715 1.44629 1.83758 1.00688 1.05891 1.19373 1.41235 0.88512 0.88334 0.90415 1.25584 1.02042 0.97765 0.99816 1.69976 1.55957 1.10669 1.22838 0.85138 0.78092 0.77504 0.78499 1.21667 1.20507 1.20410 1.21766 0.98198 0.85180 0.95645 0.87092 0.88362 0.86752 0.72918 0.79936 0.81034 0.82775 0.90685 0.88402 0.98135 0.89965 0.94039 0.95703 0.95146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 10.32 71.24 0.74 -1.35 16 2 C 0.49 12.22 7.90 87.66 0.69 12.92 16 3 O -0.54 -18.28 15.34 -3.04 -0.05 -18.32 16 4 N -0.65 -16.22 5.39 -308.03 -1.66 -17.88 16 5 C 0.31 9.25 7.45 132.98 0.99 10.24 16 6 N -0.48 -14.80 7.88 -192.58 -1.52 -16.31 16 7 C 0.08 1.78 11.17 84.64 0.95 2.73 16 8 C -0.15 -3.01 10.10 22.36 0.23 -2.78 16 9 C -0.15 -3.63 9.12 22.53 0.21 -3.43 16 10 C 0.04 1.26 6.72 22.70 0.15 1.41 16 11 O -0.30 -8.94 9.11 -93.35 -0.85 -9.79 16 12 C 0.09 2.80 2.84 31.78 0.09 2.89 16 13 H 0.10 2.79 5.96 -2.39 -0.01 2.78 16 14 C -0.12 -4.11 6.82 32.07 0.22 -3.89 16 15 C 0.15 7.06 5.91 86.93 0.51 7.57 16 16 N -0.62 -31.00 3.39 -691.54 -2.35 -33.34 16 17 C -0.25 -13.48 10.27 84.03 0.86 -12.62 16 18 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 19 C -0.06 -3.24 5.49 84.86 0.47 -2.78 16 20 N -0.95 -54.05 10.08 21.65 0.22 -53.83 16 21 Si 0.98 44.33 29.55 68.60 2.03 46.35 16 22 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 24 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 25 C 0.12 4.72 7.01 86.73 0.61 5.33 16 26 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.10 1.24 8.12 -2.38 -0.02 1.22 16 28 H 0.11 0.95 8.14 -2.38 -0.02 0.94 16 29 H 0.43 8.65 8.05 -92.70 -0.75 7.90 16 30 H 0.18 3.19 8.06 -2.91 -0.02 3.16 16 31 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 32 H 0.15 3.49 6.00 -2.91 -0.02 3.47 16 33 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.10 2.75 8.14 -2.39 -0.02 2.74 16 35 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 36 H 0.08 4.36 5.86 -2.39 -0.01 4.35 16 37 H 0.25 13.89 8.31 -92.70 -0.77 13.12 16 38 H 0.02 1.04 8.06 -2.39 -0.02 1.03 16 39 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 Total: -1.00 -73.51 326.33 2.87 -70.64 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.33 Total: 16.25 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 6.71 Total: 16.24 kcal Atomic # 7 Polarization: -116.06 SS G_CDS: -5.31 Total: -121.37 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.90 Total: -28.12 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -73.51 2.87 -70.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226151196.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.859 kcal (2) G-P(sol) polarization free energy of solvation -73.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds