Wall clock time and date at job start Tue Mar 31 2020 06:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21285 * 120.00312 * 2 1 4 4 N 1.34779 * 120.00012 * 179.97438 * 2 1 3 5 5 C 1.39587 * 120.00279 * 185.10851 * 4 2 1 6 6 C 1.39011 * 119.63993 * 174.89029 * 5 4 2 7 7 C 1.38332 * 119.16312 * 180.02562 * 6 5 4 8 8 C 1.39248 * 118.44773 * 359.97438 * 7 6 5 9 9 O 1.35976 * 120.39792 * 180.02562 * 8 7 6 10 10 C 1.42901 * 117.00366 * 5.95399 * 9 8 7 11 11 H 1.08997 * 110.88792 * 25.37053 * 10 9 8 12 12 C 1.55153 * 111.00698 * 149.25732 * 10 9 8 13 13 C 1.54321 * 102.94250 * 153.57552 * 12 10 9 14 14 N 1.47015 * 107.27150 * 337.80468 * 13 12 10 15 15 C 1.36944 * 125.64868 * 178.90008 * 14 13 12 16 16 H 1.07990 * 120.00392 * 180.02562 * 15 14 13 17 17 C 1.38816 * 119.99523 * 0.02883 * 15 14 13 18 18 N 1.31618 * 120.00504 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99593 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46902 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.46948 * 119.99786 * 19 17 15 22 22 H 1.48500 * 109.47088 * 239.99538 * 19 17 15 23 23 C 1.47463 * 108.72585 * 358.97595 * 14 13 12 24 24 C 1.38546 * 119.20083 * 359.97438 * 8 7 6 25 25 N 1.31942 * 120.76848 * 0.02562 * 24 8 7 26 26 H 1.09007 * 109.47134 * 270.00052 * 1 2 3 27 27 H 1.09004 * 109.47377 * 30.00121 * 1 2 3 28 28 H 1.09002 * 109.47258 * 150.00629 * 1 2 3 29 29 H 0.97002 * 119.99933 * 5.10737 * 4 2 1 30 30 H 1.08003 * 120.41989 * 359.97438 * 6 5 4 31 31 H 1.07993 * 120.77717 * 179.97438 * 7 6 5 32 32 H 1.09002 * 110.71897 * 271.93989 * 12 10 9 33 33 H 1.09003 * 110.71954 * 35.20753 * 12 10 9 34 34 H 1.08999 * 109.88061 * 97.22605 * 13 12 10 35 35 H 1.09000 * 109.87930 * 218.23154 * 13 12 10 36 36 H 0.96997 * 119.99926 * 180.02562 * 18 17 15 37 37 H 1.09004 * 110.34882 * 265.25602 * 23 14 13 38 38 H 1.08999 * 110.41054 * 142.91182 * 23 14 13 39 39 H 1.07994 * 119.61261 * 180.29207 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5726 -1.1696 0.1082 6 6 4.2517 -2.3778 0.2153 7 6 5.6309 -2.3687 0.3220 8 6 6.2884 -1.1413 0.3172 9 8 7.6432 -1.0861 0.4194 10 6 8.3467 -2.3297 0.3975 11 1 7.7717 -3.0923 -0.1277 12 6 9.7542 -2.1615 -0.2335 13 6 10.5638 -3.3022 0.4184 14 7 9.8783 -3.6656 1.6671 15 6 10.2670 -4.6529 2.5328 16 1 9.6930 -4.8434 3.4275 17 6 11.3989 -5.4089 2.2602 18 7 12.0982 -5.1771 1.1695 19 14 11.9296 -6.7553 3.4414 20 1 10.9819 -6.8138 4.5832 21 1 11.9341 -8.0609 2.7339 22 1 13.2948 -6.4611 3.9463 23 6 8.7016 -2.7923 1.8327 24 6 5.5457 0.0230 0.2061 25 7 4.2309 -0.0221 0.1060 26 1 -0.3634 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5139 28 1 -0.3634 -0.8900 -0.5137 29 1 1.6987 -2.0056 -0.0739 30 1 3.7094 -3.3118 0.2161 31 1 6.1847 -3.2919 0.4070 32 1 9.7097 -2.2894 -1.3151 33 1 10.1788 -1.1912 0.0239 34 1 10.5968 -4.1623 -0.2503 35 1 11.5764 -2.9615 0.6342 36 1 12.8889 -5.7056 0.9789 37 1 8.9513 -1.9343 2.4570 38 1 7.8723 -3.3503 2.2674 39 1 6.0492 0.9784 0.1969 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229098115.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:49 Heat of formation + Delta-G solvation = -13.581222 kcal Electronic energy + Delta-G solvation = -22486.483659 eV Core-core repulsion = 19009.198429 eV Total energy + Delta-G solvation = -3477.285230 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.97917 -40.74894 -39.50282 -37.92732 -35.70883 -34.29271 -33.25922 -31.66644 -31.09362 -29.66524 -28.81359 -26.55064 -25.19242 -24.03531 -22.29109 -22.08569 -21.15488 -19.44708 -19.11954 -18.98279 -18.07058 -16.93786 -16.77349 -16.61994 -16.31909 -15.88855 -15.76768 -15.54845 -14.82682 -14.72769 -14.54311 -14.39753 -14.13870 -13.87225 -13.75033 -13.29094 -13.04216 -12.98224 -12.92046 -12.70061 -12.18221 -12.04670 -11.98836 -11.78706 -11.54054 -11.25341 -11.23042 -10.75641 -10.73779 -10.21733 -8.98293 -8.83845 -7.88190 -5.25546 0.06811 0.22085 1.46996 1.48016 1.58321 1.69133 1.87435 2.14603 2.49808 2.83339 3.31147 3.41116 3.58848 3.61441 3.77942 3.78868 3.92617 4.03642 4.05727 4.06968 4.47386 4.55053 4.62178 4.63149 4.69806 4.77329 4.81524 4.94954 4.97649 5.07854 5.10713 5.16493 5.42092 5.58032 5.62661 5.70497 6.12865 6.20541 6.39375 6.94628 7.05715 7.36859 7.70551 8.34092 9.22365 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.035035 B = 0.002905 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.007890 B = 9635.684388 C =10157.209908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.490 3.510 3 O -0.543 6.543 4 N -0.647 5.647 5 C 0.298 3.702 6 C -0.144 4.144 7 C -0.141 4.141 8 C 0.048 3.952 9 O -0.304 6.304 10 C 0.081 3.919 11 H 0.098 0.902 12 C -0.127 4.127 13 C 0.186 3.814 14 N -0.623 5.623 15 C -0.244 4.244 16 H 0.085 0.915 17 C -0.063 4.063 18 N -0.950 5.950 19 Si 0.981 3.019 20 H -0.265 1.265 21 H -0.289 1.289 22 H -0.294 1.294 23 C 0.120 3.880 24 C 0.086 3.914 25 N -0.473 5.473 26 H 0.112 0.888 27 H 0.094 0.906 28 H 0.116 0.884 29 H 0.438 0.562 30 H 0.180 0.820 31 H 0.155 0.845 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.025 0.975 35 H 0.014 0.986 36 H 0.249 0.751 37 H 0.024 0.976 38 H 0.053 0.947 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.317 4.364 -4.472 24.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.279 3.721 3 O -0.417 6.417 4 N -0.298 5.298 5 C 0.067 3.933 6 C -0.167 4.167 7 C -0.168 4.168 8 C -0.001 4.001 9 O -0.216 6.216 10 C 0.024 3.976 11 H 0.116 0.884 12 C -0.165 4.165 13 C 0.061 3.939 14 N -0.351 5.351 15 C -0.373 4.373 16 H 0.102 0.898 17 C -0.257 4.257 18 N -0.599 5.599 19 Si 0.809 3.191 20 H -0.189 1.189 21 H -0.216 1.216 22 H -0.221 1.221 23 C -0.006 4.006 24 C -0.072 4.072 25 N -0.188 5.188 26 H 0.130 0.870 27 H 0.112 0.888 28 H 0.134 0.866 29 H 0.279 0.721 30 H 0.197 0.803 31 H 0.173 0.827 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.043 0.957 35 H 0.032 0.968 36 H 0.058 0.942 37 H 0.041 0.959 38 H 0.071 0.929 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -23.187 5.948 -4.493 24.356 hybrid contribution 1.270 -1.908 0.624 2.375 sum -21.917 4.041 -3.869 22.619 Atomic orbital electron populations 1.21915 0.86492 1.06764 1.06506 1.22096 0.92633 0.82665 0.74678 1.90826 1.71582 1.32591 1.46728 1.43657 1.02652 1.11679 1.71812 1.18765 0.86148 0.89720 0.98716 1.21650 0.93608 0.98474 1.02920 1.21832 0.95494 0.97830 1.01619 1.20285 0.83992 0.95710 1.00065 1.86120 1.15269 1.32579 1.87649 1.23589 0.92770 0.84248 0.96976 0.88420 1.22899 0.93010 0.99819 1.00741 1.20934 0.93340 0.93140 0.86477 1.44627 1.27970 1.38489 1.23979 1.19482 1.07793 1.08271 1.01742 0.89768 1.25677 0.97996 1.02310 0.99679 1.70159 1.19222 1.43243 1.27284 0.84978 0.77612 0.78332 0.78185 1.18943 1.21590 1.22073 1.21977 0.90084 0.93434 0.95117 1.22104 0.87690 0.97393 1.00061 1.67666 1.08204 1.28486 1.14456 0.86970 0.88755 0.86569 0.72134 0.80281 0.82734 0.88809 0.90554 0.95715 0.96811 0.94175 0.95867 0.92900 0.81567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 10.31 71.23 0.73 -0.35 16 2 C 0.49 9.35 7.90 87.65 0.69 10.04 16 3 O -0.54 -17.06 15.37 -3.05 -0.05 -17.10 16 4 N -0.65 -10.13 5.39 -308.36 -1.66 -11.80 16 5 C 0.30 7.00 7.42 132.86 0.99 7.99 16 6 C -0.14 -2.77 9.94 22.48 0.22 -2.55 16 7 C -0.14 -3.44 9.07 22.54 0.20 -3.23 16 8 C 0.05 1.40 6.70 22.59 0.15 1.55 16 9 O -0.30 -9.88 9.96 -93.28 -0.93 -10.80 16 10 C 0.08 2.78 3.01 31.99 0.10 2.88 16 11 H 0.10 3.04 5.86 -2.39 -0.01 3.02 16 12 C -0.13 -4.64 6.69 31.78 0.21 -4.42 16 13 C 0.19 9.03 5.37 86.73 0.47 9.50 16 14 N -0.62 -31.63 3.40 -691.90 -2.35 -33.98 16 15 C -0.24 -13.47 10.28 84.03 0.86 -12.61 16 16 H 0.08 4.43 7.83 -2.92 -0.02 4.41 16 17 C -0.06 -3.55 5.49 84.86 0.47 -3.08 16 18 N -0.95 -56.16 10.31 21.65 0.22 -55.93 16 19 Si 0.98 44.88 29.55 68.60 2.03 46.90 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 21 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 22 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 23 C 0.12 4.90 6.97 86.85 0.61 5.50 16 24 C 0.09 2.54 11.13 84.75 0.94 3.48 16 25 N -0.47 -14.54 7.88 -192.58 -1.52 -16.05 16 26 H 0.11 0.47 8.14 -2.38 -0.02 0.45 16 27 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.44 2.35 8.70 -92.71 -0.81 1.54 16 30 H 0.18 1.84 8.06 -2.91 -0.02 1.82 16 31 H 0.16 3.58 6.04 -2.91 -0.02 3.56 16 32 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 33 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.02 1.31 7.38 -2.39 -0.02 1.29 16 35 H 0.01 0.75 7.51 -2.39 -0.02 0.73 16 36 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 37 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.17 4.57 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -78.46 328.18 2.66 -75.80 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 0.27 Total: 8.28 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: 6.64 Total: 14.69 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -5.31 Total: -117.76 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.98 Total: -27.91 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -78.46 2.66 -75.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229098115.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.216 kcal (2) G-P(sol) polarization free energy of solvation -78.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds