Wall clock time and date at job start Tue Mar 31 2020 06:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46904 * 109.46861 * 2 1 4 4 C 1.46896 * 111.00016 * 301.59241 * 3 2 1 5 5 C 1.50698 * 109.47281 * 293.95448 * 4 3 2 6 6 H 1.08000 * 120.00126 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99848 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00243 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99828 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47143 * 89.99997 * 9 7 5 11 11 H 1.48496 * 109.47286 * 210.00330 * 9 7 5 12 12 H 1.48502 * 109.47131 * 330.00141 * 9 7 5 13 13 C 1.46900 * 110.99713 * 65.54847 * 3 2 1 14 14 C 1.50692 * 109.47194 * 71.23962 * 13 3 2 15 15 C 1.35317 * 126.04080 * 259.01770 * 14 13 3 16 16 N 1.34943 * 107.74950 * 179.87542 * 15 14 13 17 17 C 1.46498 * 126.04152 * 180.15171 * 16 15 14 18 18 N 1.40091 * 107.92452 * 0.39127 * 16 15 14 19 19 C 1.30833 * 108.20441 * 359.76143 * 18 16 15 20 20 C 1.50699 * 125.90191 * 180.02562 * 19 18 16 21 21 F 1.39895 * 109.47066 * 269.97256 * 20 19 18 22 22 F 1.39904 * 109.47070 * 29.97038 * 20 19 18 23 23 F 1.39893 * 109.47392 * 149.96999 * 20 19 18 24 24 H 1.09006 * 109.46835 * 182.61795 * 1 2 3 25 25 H 1.08998 * 109.47167 * 302.61274 * 1 2 3 26 26 H 1.08999 * 109.47333 * 62.62363 * 1 2 3 27 27 H 1.08999 * 109.47309 * 240.00310 * 2 1 3 28 28 H 1.08998 * 109.47158 * 120.00082 * 2 1 3 29 29 H 1.09001 * 109.46976 * 53.95562 * 4 3 2 30 30 H 1.09004 * 109.47362 * 173.95297 * 4 3 2 31 31 H 0.97000 * 120.00144 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.46701 * 191.24074 * 13 3 2 33 33 H 1.09003 * 109.47262 * 311.23177 * 13 3 2 34 34 H 1.08003 * 126.12532 * 0.02647 * 15 14 13 35 35 H 1.09004 * 109.47392 * 270.26113 * 17 16 15 36 36 H 1.09001 * 109.47200 * 30.25856 * 17 16 15 37 37 H 1.09003 * 109.47725 * 150.26094 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5178 2.1208 -1.1681 5 6 2.1073 1.5322 -2.4239 6 1 2.7865 0.6949 -2.3607 7 6 1.7786 2.0619 -3.6538 8 7 0.9511 3.0811 -3.7309 9 14 2.5099 1.3327 -5.2103 10 1 1.6232 0.2538 -5.7155 11 1 2.6362 2.3934 -6.2419 12 1 3.8516 0.7711 -4.9109 13 6 1.6599 2.0705 1.2485 14 6 2.4854 1.5172 2.3812 15 6 2.0718 0.6149 3.3010 16 7 3.1034 0.3784 4.1381 17 6 3.0933 -0.5379 5.2811 18 7 4.1841 1.1680 3.7244 19 6 3.8125 1.8501 2.6716 20 6 4.6670 2.8254 1.9037 21 9 4.5155 4.1059 2.4463 22 9 6.0087 2.4382 1.9898 23 9 4.2704 2.8374 0.5622 24 1 -0.3633 -1.0267 0.0469 25 1 -0.3633 0.5539 0.8656 26 1 -0.3634 0.4725 -0.9126 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 0.4311 2.0443 -1.2063 30 1 1.8055 3.1692 -1.0884 31 1 0.7202 3.4540 -4.5961 32 1 1.8536 3.1382 1.1455 33 1 0.6021 1.9118 1.4583 34 1 1.0923 0.1629 3.3540 35 1 2.7670 -0.0027 6.1730 36 1 2.4080 -1.3615 5.0806 37 1 4.0973 -0.9312 5.4405 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232087567.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:44 Heat of formation + Delta-G solvation = -58.025877 kcal Electronic energy + Delta-G solvation = -24533.812785 eV Core-core repulsion = 20512.743550 eV Total energy + Delta-G solvation = -4021.069235 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.125 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.67402 -47.28178 -47.03937 -41.43413 -37.18613 -33.82353 -32.56794 -31.06607 -29.43395 -28.44215 -26.98938 -25.24409 -23.95958 -22.94995 -21.13607 -20.58952 -19.26757 -18.11253 -17.70515 -17.42081 -16.26797 -16.01360 -15.71703 -15.02330 -14.80759 -14.13966 -14.12043 -13.97245 -13.78365 -13.62346 -13.44987 -13.20600 -13.18526 -13.03605 -12.89903 -12.68530 -12.07104 -11.95051 -11.76105 -11.41078 -11.12127 -10.90214 -10.76638 -10.64755 -10.45135 -10.00703 -9.74128 -9.65220 -9.14763 -8.50318 -8.34630 -7.08649 -5.95000 -3.94698 1.57614 2.06874 2.42457 3.11061 3.36559 3.43239 3.48432 3.95354 4.30591 4.50150 4.61260 4.75533 4.81241 4.87865 5.12232 5.14850 5.31484 5.40728 5.46732 5.69663 5.80744 5.94995 6.00367 6.18903 6.24370 6.29340 6.47338 6.74183 6.81306 6.94283 7.34238 7.40845 7.47856 7.88872 8.18497 8.30025 8.63996 9.12668 9.68753 11.15824 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.018094 B = 0.005507 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.130668 B = 5083.070747 C = 5960.352986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.064 3.936 3 N -0.524 5.524 4 C 0.192 3.808 5 C -0.499 4.499 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.900 5.900 9 Si 0.894 3.106 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.273 1.273 13 C 0.116 3.884 14 C -0.164 4.164 15 C 0.055 3.945 16 N -0.363 5.363 17 C 0.102 3.898 18 N -0.250 5.250 19 C 0.003 3.997 20 C 0.549 3.451 21 F -0.178 7.178 22 F -0.177 7.177 23 F -0.131 7.131 24 H 0.044 0.956 25 H 0.043 0.957 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.047 0.953 29 H -0.001 1.001 30 H 0.029 0.971 31 H 0.260 0.740 32 H 0.077 0.923 33 H 0.041 0.959 34 H 0.181 0.819 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.243 -5.679 17.482 18.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.065 4.065 3 N -0.247 5.247 4 C 0.067 3.933 5 C -0.538 4.538 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.540 5.540 9 Si 0.722 3.278 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.198 1.198 13 C -0.013 4.013 14 C -0.176 4.176 15 C -0.091 4.091 16 N -0.146 5.146 17 C -0.039 4.039 18 N -0.075 5.075 19 C -0.164 4.164 20 C 0.493 3.507 21 F -0.160 7.160 22 F -0.159 7.159 23 F -0.112 7.112 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.065 0.935 29 H 0.017 0.983 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.059 0.941 34 H 0.198 0.802 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.637 -5.891 18.220 19.329 hybrid contribution -1.119 -0.126 -1.400 1.797 sum 1.518 -6.018 16.820 17.928 Atomic orbital electron populations 1.22393 0.99516 1.00523 1.02272 1.21921 0.91873 0.91724 1.00979 1.62310 1.59407 1.01716 1.01304 1.19780 0.93710 0.93715 0.86108 1.21131 1.26608 1.15952 0.90061 0.92029 1.24945 0.95409 0.95161 0.99033 1.69952 1.35147 1.24173 1.24729 0.86564 0.79633 0.78613 0.83002 1.20929 1.21363 1.19817 1.20458 0.94711 0.98218 0.87944 1.19960 0.93659 1.03114 1.00843 1.22374 0.94592 0.99790 0.92300 1.48397 1.08500 1.33504 1.24242 1.21934 1.04993 0.91474 0.85530 1.77256 1.09337 1.07400 1.13480 1.21965 0.95738 1.01184 0.97490 1.16977 0.76994 0.78132 0.78640 1.93197 1.95483 1.41135 1.86170 1.93189 1.35530 1.90901 1.96250 1.93464 1.90007 1.96095 1.31600 0.93729 0.93821 0.90981 0.90343 0.93500 0.98344 0.95266 0.93079 0.90500 0.94067 0.80195 0.90456 0.89036 0.89033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.18 9.23 37.16 0.34 -2.83 16 2 C 0.06 1.18 5.72 -3.82 -0.02 1.16 16 3 N -0.52 -10.93 3.67 -237.52 -0.87 -11.80 16 4 C 0.19 4.84 4.44 -4.98 -0.02 4.82 16 5 C -0.50 -13.84 8.54 -34.44 -0.29 -14.13 16 6 H 0.06 1.72 7.10 -52.49 -0.37 1.34 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 9 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.12 2.04 4.30 -4.98 -0.02 2.02 16 14 C -0.16 -2.59 4.84 -105.05 -0.51 -3.10 16 15 C 0.05 0.67 10.71 -17.23 -0.18 0.49 16 16 N -0.36 -4.37 4.01 -68.16 -0.27 -4.65 16 17 C 0.10 0.67 11.47 59.85 0.69 1.35 16 18 N -0.25 -3.93 12.51 33.67 0.42 -3.51 16 19 C 0.00 0.05 6.56 -82.41 -0.54 -0.49 16 20 C 0.55 9.70 3.50 36.01 0.13 9.83 16 21 F -0.18 -3.00 17.30 2.25 0.04 -2.97 16 22 F -0.18 -3.10 17.25 2.25 0.04 -3.06 16 23 F -0.13 -2.66 14.81 2.25 0.03 -2.63 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.04 0.66 6.22 -51.93 -0.32 0.34 16 26 H 0.07 1.45 6.39 -51.93 -0.33 1.11 16 27 H 0.08 1.62 6.90 -51.93 -0.36 1.26 16 28 H 0.05 0.78 6.78 -51.93 -0.35 0.43 16 29 H 0.00 -0.03 6.01 -51.93 -0.31 -0.34 16 30 H 0.03 0.81 7.87 -51.93 -0.41 0.40 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.08 1.43 7.51 -51.93 -0.39 1.04 16 33 H 0.04 0.67 5.97 -51.93 -0.31 0.36 16 34 H 0.18 1.58 8.06 -52.48 -0.42 1.16 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 318.16 15.07 4.79 4.79 Total: -1.00 -32.13 318.16 -5.04 -37.18 By element: Atomic # 1 Polarization: -0.47 SS G_CDS: -4.41 Total: -4.88 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -0.54 Total: 0.58 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 0.01 Total: -45.81 kcal Atomic # 9 Polarization: -8.76 SS G_CDS: 0.11 Total: -8.65 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.13 -5.04 -37.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232087567.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.850 kcal (2) G-P(sol) polarization free energy of solvation -32.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds