Wall clock time and date at job start Tue Mar 31 2020 06:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46904 * 109.46861 * 2 1 4 4 C 1.46896 * 111.00016 * 301.59241 * 3 2 1 5 5 C 1.50698 * 109.47281 * 293.95448 * 4 3 2 6 6 H 1.08000 * 120.00126 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99848 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00243 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99828 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47143 * 89.99997 * 9 7 5 11 11 H 1.48496 * 109.47286 * 210.00330 * 9 7 5 12 12 H 1.48502 * 109.47131 * 330.00141 * 9 7 5 13 13 C 1.46900 * 110.99713 * 65.54847 * 3 2 1 14 14 C 1.50692 * 109.47194 * 71.23962 * 13 3 2 15 15 C 1.35317 * 126.04080 * 259.01770 * 14 13 3 16 16 N 1.34943 * 107.74950 * 179.87542 * 15 14 13 17 17 C 1.46498 * 126.04152 * 180.15171 * 16 15 14 18 18 N 1.40091 * 107.92452 * 0.39127 * 16 15 14 19 19 C 1.30833 * 108.20441 * 359.76143 * 18 16 15 20 20 C 1.50699 * 125.90191 * 180.02562 * 19 18 16 21 21 F 1.39895 * 109.47066 * 269.97256 * 20 19 18 22 22 F 1.39904 * 109.47070 * 29.97038 * 20 19 18 23 23 F 1.39893 * 109.47392 * 149.96999 * 20 19 18 24 24 H 1.09006 * 109.46835 * 182.61795 * 1 2 3 25 25 H 1.08998 * 109.47167 * 302.61274 * 1 2 3 26 26 H 1.08999 * 109.47333 * 62.62363 * 1 2 3 27 27 H 1.08999 * 109.47309 * 240.00310 * 2 1 3 28 28 H 1.08998 * 109.47158 * 120.00082 * 2 1 3 29 29 H 1.09001 * 109.46976 * 53.95562 * 4 3 2 30 30 H 1.09004 * 109.47362 * 173.95297 * 4 3 2 31 31 H 0.97000 * 120.00144 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.46701 * 191.24074 * 13 3 2 33 33 H 1.09003 * 109.47262 * 311.23177 * 13 3 2 34 34 H 1.08003 * 126.12532 * 0.02647 * 15 14 13 35 35 H 1.09004 * 109.47392 * 270.26113 * 17 16 15 36 36 H 1.09001 * 109.47200 * 30.25856 * 17 16 15 37 37 H 1.09003 * 109.47725 * 150.26094 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5178 2.1208 -1.1681 5 6 2.1073 1.5322 -2.4239 6 1 2.7865 0.6949 -2.3607 7 6 1.7786 2.0619 -3.6538 8 7 0.9511 3.0811 -3.7309 9 14 2.5099 1.3327 -5.2103 10 1 1.6232 0.2538 -5.7155 11 1 2.6362 2.3934 -6.2419 12 1 3.8516 0.7711 -4.9109 13 6 1.6599 2.0705 1.2485 14 6 2.4854 1.5172 2.3812 15 6 2.0718 0.6149 3.3010 16 7 3.1034 0.3784 4.1381 17 6 3.0933 -0.5379 5.2811 18 7 4.1841 1.1680 3.7244 19 6 3.8125 1.8501 2.6716 20 6 4.6670 2.8254 1.9037 21 9 4.5155 4.1059 2.4463 22 9 6.0087 2.4382 1.9898 23 9 4.2704 2.8374 0.5622 24 1 -0.3633 -1.0267 0.0469 25 1 -0.3633 0.5539 0.8656 26 1 -0.3634 0.4725 -0.9126 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 0.4311 2.0443 -1.2063 30 1 1.8055 3.1692 -1.0884 31 1 0.7202 3.4540 -4.5961 32 1 1.8536 3.1382 1.1455 33 1 0.6021 1.9118 1.4583 34 1 1.0923 0.1629 3.3540 35 1 2.7670 -0.0027 6.1730 36 1 2.4080 -1.3615 5.0806 37 1 4.0973 -0.9312 5.4405 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232087567.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:44 Heat of formation + Delta-G solvation = -79.254815 kcal Electronic energy + Delta-G solvation = -24534.733341 eV Core-core repulsion = 20512.743550 eV Total energy + Delta-G solvation = -4021.989791 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.125 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.08736 -48.66461 -48.52271 -42.50199 -38.76901 -34.94033 -34.50626 -32.31900 -30.91853 -29.58622 -28.63094 -26.65598 -25.20017 -24.75997 -22.21598 -21.94715 -20.76936 -19.51082 -19.10557 -18.62998 -18.25759 -17.14175 -16.87670 -16.63993 -16.29888 -15.79428 -15.50263 -15.40521 -15.04196 -15.03004 -14.72262 -14.69037 -14.57323 -14.49751 -13.97736 -13.60287 -13.58534 -13.34733 -13.07427 -13.03823 -12.79108 -12.59085 -12.44110 -12.38854 -11.93014 -11.74394 -11.40642 -11.18233 -10.66493 -10.52527 -9.60851 -8.73411 -8.11683 -6.19176 0.51456 1.08892 1.26430 1.41991 1.44045 1.55051 1.90967 2.45559 2.72609 3.04607 3.20821 3.40318 3.56448 3.81467 3.86782 4.17646 4.39882 4.42979 4.47377 4.55394 4.58265 4.68992 4.73784 4.84612 4.92497 5.05470 5.12211 5.14426 5.35549 5.50084 5.60636 5.76370 5.93857 6.18320 6.27829 6.53364 6.80094 6.97696 7.49237 8.98532 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.018094 B = 0.005507 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.130668 B = 5083.070747 C = 5960.352986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.066 3.934 3 N -0.536 5.536 4 C 0.211 3.789 5 C -0.510 4.510 6 H 0.055 0.945 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.959 3.041 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.271 1.271 13 C 0.124 3.876 14 C -0.195 4.195 15 C 0.084 3.916 16 N -0.348 5.348 17 C 0.088 3.912 18 N -0.274 5.274 19 C -0.018 4.018 20 C 0.546 3.454 21 F -0.178 7.178 22 F -0.180 7.180 23 F -0.153 7.153 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.031 0.969 27 H 0.051 0.949 28 H 0.076 0.924 29 H -0.017 1.017 30 H -0.006 1.006 31 H 0.262 0.738 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.226 0.774 35 H 0.098 0.902 36 H 0.127 0.873 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.515 -8.133 19.371 21.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.062 4.062 3 N -0.260 5.260 4 C 0.085 3.915 5 C -0.549 4.549 6 H 0.074 0.926 7 C -0.194 4.194 8 N -0.575 5.575 9 Si 0.785 3.215 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.195 1.195 13 C -0.005 4.005 14 C -0.206 4.206 15 C -0.063 4.063 16 N -0.131 5.131 17 C -0.051 4.051 18 N -0.101 5.101 19 C -0.183 4.183 20 C 0.489 3.511 21 F -0.159 7.159 22 F -0.161 7.161 23 F -0.135 7.135 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.095 0.905 29 H 0.001 0.999 30 H 0.012 0.988 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.243 0.757 35 H 0.117 0.883 36 H 0.145 0.855 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.929 -8.365 20.148 21.901 hybrid contribution -0.885 0.583 -1.819 2.105 sum 1.044 -7.782 18.329 19.940 Atomic orbital electron populations 1.22259 0.97920 1.02251 1.01141 1.21908 0.93151 0.90118 1.01029 1.62148 1.59943 1.02665 1.01225 1.19346 0.92442 0.92155 0.87601 1.21424 1.26323 1.15710 0.91427 0.92637 1.25770 0.95791 0.95525 1.02301 1.70072 1.36438 1.25458 1.25533 0.85537 0.78939 0.78043 0.79020 1.19717 1.21023 1.19528 1.20307 0.96167 0.96845 0.87156 1.19812 0.93364 1.05630 1.01844 1.22912 0.95776 0.97441 0.90168 1.48881 1.07288 1.32360 1.24588 1.22480 1.06441 0.91719 0.84413 1.77199 1.11204 1.08291 1.13363 1.21793 0.96148 1.01926 0.98402 1.17171 0.77193 0.78719 0.77972 1.93185 1.95487 1.41289 1.85973 1.93171 1.35803 1.90925 1.96195 1.93412 1.90261 1.96267 1.33511 0.90809 0.91685 0.94982 0.93072 0.90537 0.99931 0.98828 0.92965 0.92830 0.92164 0.75717 0.88337 0.85466 0.88711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.63 9.23 71.98 0.66 -4.97 16 2 C 0.07 2.38 5.72 86.30 0.49 2.87 16 3 N -0.54 -22.66 3.67 -905.37 -3.32 -25.98 16 4 C 0.21 11.09 4.44 85.56 0.38 11.47 16 5 C -0.51 -29.18 8.54 25.60 0.22 -28.97 16 6 H 0.06 3.17 7.10 -2.91 -0.02 3.15 16 7 C 0.00 0.21 5.46 84.66 0.46 0.67 16 8 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 9 Si 0.96 45.39 29.54 68.60 2.03 47.41 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 13 C 0.12 4.34 4.30 85.55 0.37 4.70 16 14 C -0.19 -5.81 4.84 -20.14 -0.10 -5.91 16 15 C 0.08 1.71 10.71 83.54 0.89 2.61 16 16 N -0.35 -7.05 4.01 -369.56 -1.48 -8.53 16 17 C 0.09 0.73 11.47 127.77 1.47 2.19 16 18 N -0.27 -8.15 12.51 -47.38 -0.59 -8.74 16 19 C -0.02 -0.60 6.56 43.10 0.28 -0.31 16 20 C 0.55 19.89 3.50 71.24 0.25 20.14 16 21 F -0.18 -6.22 17.30 44.97 0.78 -5.44 16 22 F -0.18 -6.45 17.25 44.97 0.78 -5.67 16 23 F -0.15 -6.57 14.81 44.97 0.67 -5.90 16 24 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 25 H 0.06 1.77 6.22 -2.39 -0.01 1.75 16 26 H 0.03 1.27 6.39 -2.39 -0.02 1.26 16 27 H 0.05 2.10 6.90 -2.39 -0.02 2.09 16 28 H 0.08 2.30 6.78 -2.39 -0.02 2.28 16 29 H -0.02 -0.93 6.01 -2.39 -0.01 -0.94 16 30 H -0.01 -0.38 7.87 -2.38 -0.02 -0.40 16 31 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 32 H 0.05 2.08 7.51 -2.39 -0.02 2.06 16 33 H 0.06 1.84 5.97 -2.39 -0.01 1.83 16 34 H 0.23 2.44 8.06 -2.91 -0.02 2.41 16 35 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 37 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -73.29 318.16 5.62 -67.67 By element: Atomic # 1 Polarization: -4.01 SS G_CDS: 1.10 Total: -2.91 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 5.38 Total: 4.51 kcal Atomic # 7 Polarization: -94.55 SS G_CDS: -5.11 Total: -99.66 kcal Atomic # 9 Polarization: -19.24 SS G_CDS: 2.22 Total: -17.02 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -73.29 5.62 -67.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232087567.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.585 kcal (2) G-P(sol) polarization free energy of solvation -73.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds