Wall clock time and date at job start Tue Mar 31 2020 06:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86300 * 109.47051 * 2 1 4 4 C 1.86303 * 109.47179 * 239.99979 * 2 1 3 5 5 O 1.63104 * 109.47262 * 119.99708 * 2 1 3 6 6 C 1.35901 * 113.99423 * 67.23606 * 5 2 1 7 7 C 1.38752 * 120.05813 * 276.71289 * 6 5 2 8 8 C 1.38118 * 119.94453 * 179.97438 * 7 6 5 9 9 C 1.38295 * 120.05505 * 0.02562 * 8 7 6 10 10 C 1.38236 * 120.11082 * 0.02747 * 9 8 7 11 11 C 1.38168 * 120.05966 * 359.94942 * 10 9 8 12 12 C 1.50697 * 120.03071 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.47552 * 257.83039 * 12 11 10 14 14 C 1.47477 * 111.00194 * 74.02425 * 13 12 11 15 15 C 1.53507 * 87.93337 * 138.70805 * 14 13 12 16 16 C 1.50699 * 114.34520 * 220.32105 * 15 14 13 17 17 N 1.27945 * 120.00351 * 68.91946 * 16 15 14 18 18 Si 1.86802 * 120.00104 * 248.92085 * 16 15 14 19 19 H 1.48500 * 109.46873 * 89.99907 * 18 16 15 20 20 H 1.48494 * 109.47491 * 210.00119 * 18 16 15 21 21 H 1.48499 * 109.46860 * 330.00079 * 18 16 15 22 22 C 1.47472 * 111.00278 * 169.99984 * 13 12 11 23 23 H 1.09003 * 109.47316 * 300.00063 * 1 2 3 24 24 H 1.09001 * 109.46996 * 60.00153 * 1 2 3 25 25 H 1.09001 * 109.47011 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47106 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47096 * 299.99786 * 3 2 1 28 28 H 1.09002 * 109.47606 * 60.00000 * 3 2 1 29 29 H 1.08993 * 109.46846 * 293.71412 * 4 2 1 30 30 H 1.09001 * 109.47182 * 53.72014 * 4 2 1 31 31 H 1.09000 * 109.46878 * 173.71816 * 4 2 1 32 32 H 1.07995 * 120.02597 * 0.02562 * 7 6 5 33 33 H 1.08003 * 119.97215 * 180.29983 * 8 7 6 34 34 H 1.08000 * 119.93861 * 180.02562 * 9 8 7 35 35 H 1.08002 * 119.96951 * 179.97438 * 10 9 8 36 36 H 1.09004 * 109.46976 * 17.82807 * 12 11 10 37 37 H 1.08994 * 109.47095 * 137.82488 * 12 11 10 38 38 H 1.08999 * 113.47987 * 253.47412 * 14 13 12 39 39 H 1.09000 * 113.47483 * 23.94196 * 14 13 12 40 40 H 1.08998 * 114.17198 * 87.62146 * 15 14 13 41 41 H 0.96997 * 120.00464 * 179.97438 * 17 16 15 42 42 H 1.09003 * 113.48006 * 336.06023 * 22 13 12 43 43 H 1.09005 * 113.47713 * 106.46962 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 8 2.4067 -0.7688 1.3318 6 6 2.1380 -2.1009 1.3493 7 6 0.9001 -2.5545 1.7819 8 6 0.6294 -3.9088 1.7982 9 6 1.5910 -4.8124 1.3845 10 6 2.8254 -4.3631 0.9541 11 6 3.1011 -3.0093 0.9354 12 6 4.4468 -2.5201 0.4656 13 7 5.2715 -2.1638 1.6278 14 6 5.7513 -3.3713 2.3256 15 6 7.1093 -2.6731 2.4829 16 6 8.2990 -3.5734 2.2705 17 7 8.5562 -4.0291 1.1030 18 14 9.3982 -4.0243 3.7120 19 1 8.8892 -5.2627 4.3543 20 1 10.7830 -4.2518 3.2265 21 1 9.3963 -2.9168 4.7013 22 6 6.6676 -1.9086 1.2270 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.5740 1.7565 -0.0005 27 1 2.1206 2.2703 -0.8900 28 1 2.1206 2.2704 0.8900 29 1 2.2155 -1.9332 -1.4666 30 1 2.0318 -0.4334 -2.4076 31 1 3.5682 -0.7819 -1.5791 32 1 0.1487 -1.8492 2.1047 33 1 -0.3357 -4.2621 2.1303 34 1 1.3771 -5.8710 1.3976 35 1 3.5749 -5.0708 0.6319 36 1 4.9414 -3.3076 -0.1031 37 1 4.3137 -1.6433 -0.1680 38 1 5.2452 -3.5551 3.2733 39 1 5.7886 -4.2549 1.6885 40 1 7.1921 -2.0540 3.3761 41 1 9.3222 -4.6083 0.9662 42 1 6.9495 -2.4019 0.2968 43 1 6.9378 -0.8527 1.2428 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237724503.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:36 Heat of formation + Delta-G solvation = 9.822245 kcal Electronic energy + Delta-G solvation = -21953.526509 eV Core-core repulsion = 18930.347181 eV Total energy + Delta-G solvation = -3023.179328 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.147 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.57842 -40.44423 -37.47043 -36.25352 -33.52198 -30.91280 -29.76484 -29.58277 -28.53583 -28.36995 -26.74337 -26.13384 -23.42164 -22.93679 -21.57786 -19.99168 -18.80071 -17.75044 -17.12370 -16.96118 -16.62960 -16.31821 -16.06478 -15.36026 -14.92200 -14.63355 -14.34340 -14.18205 -14.04858 -13.91902 -13.64060 -13.51681 -13.49056 -13.28327 -13.23254 -13.13202 -13.08198 -13.05199 -12.81111 -12.43564 -12.30705 -12.11206 -11.97843 -11.68095 -11.51465 -11.06432 -10.82382 -10.46675 -10.00513 -9.72585 -9.63156 -9.20356 0.36126 0.42643 0.73614 1.04914 1.37803 1.42780 1.68341 1.82858 1.83132 1.97949 2.41844 2.81560 3.16928 3.54969 3.72558 3.84693 3.95372 4.03473 4.18800 4.22913 4.34178 4.45928 4.54979 4.60276 4.64779 4.67777 4.68900 4.70938 4.74606 4.75585 4.76819 4.78710 4.84481 4.92045 5.02317 5.11028 5.26207 5.30291 5.41671 5.50179 5.51885 5.55344 5.59622 5.65826 5.69829 6.14964 6.29240 6.83879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.509 4.509 2 Si 1.258 2.742 3 C -0.466 4.466 4 C -0.509 4.509 5 O -0.550 6.550 6 C 0.156 3.844 7 C -0.167 4.167 8 C -0.094 4.094 9 C -0.140 4.140 10 C -0.091 4.091 11 C -0.114 4.114 12 C 0.059 3.941 13 N -0.456 5.456 14 C 0.019 3.981 15 C -0.097 4.097 16 C 0.006 3.994 17 N -0.633 5.633 18 Si 0.935 3.065 19 H -0.239 1.239 20 H -0.249 1.249 21 H -0.233 1.233 22 C 0.012 3.988 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.131 0.869 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.052 0.948 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.120 0.880 41 H 0.338 0.662 42 H 0.086 0.914 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.398 -0.998 -0.014 1.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.611 4.611 2 Si 1.396 2.604 3 C -0.572 4.572 4 C -0.611 4.611 5 O -0.504 6.504 6 C 0.112 3.888 7 C -0.185 4.185 8 C -0.112 4.112 9 C -0.158 4.158 10 C -0.110 4.110 11 C -0.115 4.115 12 C -0.069 4.069 13 N -0.177 5.177 14 C -0.111 4.111 15 C -0.116 4.116 16 C -0.243 4.243 17 N -0.246 5.246 18 Si 0.751 3.249 19 H -0.162 1.162 20 H -0.172 1.172 21 H -0.155 1.155 22 C -0.117 4.117 23 H 0.091 0.909 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.149 0.851 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.071 0.929 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.138 0.862 41 H 0.155 0.845 42 H 0.104 0.896 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.217 -0.570 0.301 0.680 hybrid contribution 0.590 -0.827 -0.638 1.199 sum 0.807 -1.397 -0.337 1.648 Atomic orbital electron populations 1.27020 1.24619 1.04765 1.04722 0.77340 0.63852 0.64380 0.54808 1.26286 1.07047 1.18991 1.04917 1.27095 1.06693 1.09080 1.18249 1.83831 1.82456 1.20505 1.63563 1.17792 0.92099 0.81951 0.96978 1.21379 0.96627 0.96686 1.03853 1.21033 0.99438 0.92428 0.98326 1.21108 0.93743 0.99896 1.01027 1.20957 0.97080 0.94140 0.98818 1.19763 0.95829 0.93034 1.02918 1.21621 0.91157 1.00711 0.93364 1.69125 1.07355 1.23657 1.17577 1.23770 0.92727 0.93732 1.00893 1.22074 0.91708 0.97180 1.00664 1.29996 0.99571 0.94517 1.00231 1.68071 1.21427 1.09868 1.25220 0.85690 0.78348 0.82640 0.78195 1.16248 1.17201 1.15534 1.23846 0.88973 1.01444 0.97453 0.90901 0.90715 0.90991 0.90577 0.90371 0.90616 0.91002 0.90597 0.90827 0.85070 0.85561 0.85794 0.85918 0.92948 0.89091 0.89361 0.90897 0.86195 0.84499 0.89578 0.89585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.51 0.10 8.17 101.05 0.83 0.92 16 2 Si 1.26 -0.63 12.04 -169.99 -2.05 -2.68 16 3 C -0.47 0.15 8.65 101.05 0.87 1.02 16 4 C -0.51 0.09 7.49 101.05 0.76 0.85 16 5 O -0.55 -1.12 8.02 -19.43 -0.16 -1.27 16 6 C 0.16 0.34 4.53 -39.22 -0.18 0.16 16 7 C -0.17 -0.24 8.46 -39.44 -0.33 -0.57 16 8 C -0.09 -0.06 10.04 -39.60 -0.40 -0.45 16 9 C -0.14 -0.06 10.04 -39.56 -0.40 -0.46 16 10 C -0.09 -0.08 9.64 -39.61 -0.38 -0.46 16 11 C -0.11 -0.20 4.29 -104.47 -0.45 -0.65 16 12 C 0.06 0.08 4.49 -4.98 -0.02 0.06 16 13 N -0.46 -0.74 6.40 -246.12 -1.58 -2.32 16 14 C 0.02 0.01 6.86 -7.56 -0.05 -0.04 16 15 C -0.10 0.04 4.03 -91.24 -0.37 -0.33 16 16 C 0.01 0.00 5.15 -13.90 -0.07 -0.08 16 17 N -0.63 -0.16 12.71 56.23 0.71 0.56 16 18 Si 0.94 -1.42 29.56 -169.99 -5.03 -6.44 16 19 H -0.24 0.15 7.11 56.52 0.40 0.55 16 20 H -0.25 0.15 7.11 56.52 0.40 0.55 16 21 H -0.23 0.25 7.11 56.52 0.40 0.65 16 22 C 0.01 0.01 7.17 -7.55 -0.05 -0.05 16 23 H 0.07 -0.01 7.96 -51.93 -0.41 -0.43 16 24 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 25 H 0.07 0.00 6.99 -51.93 -0.36 -0.36 16 26 H 0.08 -0.01 7.96 -51.93 -0.41 -0.42 16 27 H 0.08 -0.09 7.96 -51.93 -0.41 -0.50 16 28 H 0.07 -0.01 7.96 -51.93 -0.41 -0.42 16 29 H 0.07 0.03 7.38 -51.93 -0.38 -0.35 16 30 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 31 H 0.07 -0.02 6.45 -51.93 -0.34 -0.35 16 32 H 0.13 0.04 7.63 -52.49 -0.40 -0.37 16 33 H 0.13 -0.17 8.06 -52.48 -0.42 -0.59 16 34 H 0.12 -0.16 8.06 -52.49 -0.42 -0.58 16 35 H 0.12 -0.06 8.02 -52.49 -0.42 -0.48 16 36 H 0.05 0.04 7.40 -51.93 -0.38 -0.34 16 37 H 0.09 0.09 4.37 -51.93 -0.23 -0.14 16 38 H 0.09 0.04 8.14 -51.93 -0.42 -0.39 16 39 H 0.07 0.04 7.66 -51.93 -0.40 -0.36 16 40 H 0.12 -0.18 7.87 -51.93 -0.41 -0.59 16 41 H 0.34 -0.39 8.23 -40.82 -0.34 -0.72 16 42 H 0.09 0.09 6.93 -51.93 -0.36 -0.27 16 43 H 0.09 0.02 8.14 -51.93 -0.42 -0.41 16 LS Contribution 348.19 15.07 5.25 5.25 Total: 0.00 -4.17 348.19 -10.07 -14.25 By element: Atomic # 1 Polarization: -0.27 SS G_CDS: -6.98 Total: -7.25 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -0.25 Total: -0.09 kcal Atomic # 7 Polarization: -0.90 SS G_CDS: -0.86 Total: -1.76 kcal Atomic # 8 Polarization: -1.12 SS G_CDS: -0.16 Total: -1.27 kcal Atomic # 14 Polarization: -2.05 SS G_CDS: -7.07 Total: -9.12 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -4.17 -10.07 -14.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237724503.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.069 kcal (2) G-P(sol) polarization free energy of solvation -4.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds