Wall clock time and date at job start Tue Mar 31 2020 06:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86300 * 109.47051 * 2 1 4 4 C 1.86303 * 109.47179 * 239.99979 * 2 1 3 5 5 O 1.63104 * 109.47262 * 119.99708 * 2 1 3 6 6 C 1.35901 * 113.99423 * 67.23606 * 5 2 1 7 7 C 1.38752 * 120.05813 * 276.71289 * 6 5 2 8 8 C 1.38118 * 119.94453 * 179.97438 * 7 6 5 9 9 C 1.38295 * 120.05505 * 0.02562 * 8 7 6 10 10 C 1.38236 * 120.11082 * 0.02747 * 9 8 7 11 11 C 1.38168 * 120.05966 * 359.94942 * 10 9 8 12 12 C 1.50697 * 120.03071 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.47552 * 257.83039 * 12 11 10 14 14 C 1.47477 * 111.00194 * 74.02425 * 13 12 11 15 15 C 1.53507 * 87.93337 * 138.70805 * 14 13 12 16 16 C 1.50699 * 114.34520 * 220.32105 * 15 14 13 17 17 N 1.27945 * 120.00351 * 68.91946 * 16 15 14 18 18 Si 1.86802 * 120.00104 * 248.92085 * 16 15 14 19 19 H 1.48500 * 109.46873 * 89.99907 * 18 16 15 20 20 H 1.48494 * 109.47491 * 210.00119 * 18 16 15 21 21 H 1.48499 * 109.46860 * 330.00079 * 18 16 15 22 22 C 1.47472 * 111.00278 * 169.99984 * 13 12 11 23 23 H 1.09003 * 109.47316 * 300.00063 * 1 2 3 24 24 H 1.09001 * 109.46996 * 60.00153 * 1 2 3 25 25 H 1.09001 * 109.47011 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47106 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47096 * 299.99786 * 3 2 1 28 28 H 1.09002 * 109.47606 * 60.00000 * 3 2 1 29 29 H 1.08993 * 109.46846 * 293.71412 * 4 2 1 30 30 H 1.09001 * 109.47182 * 53.72014 * 4 2 1 31 31 H 1.09000 * 109.46878 * 173.71816 * 4 2 1 32 32 H 1.07995 * 120.02597 * 0.02562 * 7 6 5 33 33 H 1.08003 * 119.97215 * 180.29983 * 8 7 6 34 34 H 1.08000 * 119.93861 * 180.02562 * 9 8 7 35 35 H 1.08002 * 119.96951 * 179.97438 * 10 9 8 36 36 H 1.09004 * 109.46976 * 17.82807 * 12 11 10 37 37 H 1.08994 * 109.47095 * 137.82488 * 12 11 10 38 38 H 1.08999 * 113.47987 * 253.47412 * 14 13 12 39 39 H 1.09000 * 113.47483 * 23.94196 * 14 13 12 40 40 H 1.08998 * 114.17198 * 87.62146 * 15 14 13 41 41 H 0.96997 * 120.00464 * 179.97438 * 17 16 15 42 42 H 1.09003 * 113.48006 * 336.06023 * 22 13 12 43 43 H 1.09005 * 113.47713 * 106.46962 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 8 2.4067 -0.7688 1.3318 6 6 2.1380 -2.1009 1.3493 7 6 0.9001 -2.5545 1.7819 8 6 0.6294 -3.9088 1.7982 9 6 1.5910 -4.8124 1.3845 10 6 2.8254 -4.3631 0.9541 11 6 3.1011 -3.0093 0.9354 12 6 4.4468 -2.5201 0.4656 13 7 5.2715 -2.1638 1.6278 14 6 5.7513 -3.3713 2.3256 15 6 7.1093 -2.6731 2.4829 16 6 8.2990 -3.5734 2.2705 17 7 8.5562 -4.0291 1.1030 18 14 9.3982 -4.0243 3.7120 19 1 8.8892 -5.2627 4.3543 20 1 10.7830 -4.2518 3.2265 21 1 9.3963 -2.9168 4.7013 22 6 6.6676 -1.9086 1.2270 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.5740 1.7565 -0.0005 27 1 2.1206 2.2703 -0.8900 28 1 2.1206 2.2704 0.8900 29 1 2.2155 -1.9332 -1.4666 30 1 2.0318 -0.4334 -2.4076 31 1 3.5682 -0.7819 -1.5791 32 1 0.1487 -1.8492 2.1047 33 1 -0.3357 -4.2621 2.1303 34 1 1.3771 -5.8710 1.3976 35 1 3.5749 -5.0708 0.6319 36 1 4.9414 -3.3076 -0.1031 37 1 4.3137 -1.6433 -0.1680 38 1 5.2452 -3.5551 3.2733 39 1 5.7886 -4.2549 1.6885 40 1 7.1921 -2.0540 3.3761 41 1 9.3222 -4.6083 0.9662 42 1 6.9495 -2.4019 0.2968 43 1 6.9378 -0.8527 1.2428 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237724503.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:35 Heat of formation + Delta-G solvation = 18.802356 kcal Electronic energy + Delta-G solvation = -21953.137102 eV Core-core repulsion = 18930.347181 eV Total energy + Delta-G solvation = -3022.789921 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.61795 -40.47878 -37.51672 -36.24432 -33.55540 -30.94677 -29.78930 -29.57074 -28.52256 -28.34771 -26.78388 -26.16339 -23.46437 -22.96022 -21.62619 -19.98573 -18.84025 -17.72287 -17.14670 -17.01261 -16.67327 -16.34488 -16.08602 -15.38661 -14.94218 -14.58789 -14.33486 -14.18533 -14.05747 -13.92350 -13.64765 -13.53036 -13.48808 -13.26353 -13.21205 -13.13265 -13.07290 -13.05729 -12.82463 -12.41175 -12.29559 -12.10284 -11.95072 -11.69838 -11.53117 -11.06782 -10.81109 -10.47655 -10.02751 -9.73077 -9.68217 -9.25645 0.32563 0.38031 0.79299 1.13988 1.43646 1.49428 1.78334 1.86553 1.91642 2.01516 2.42958 2.77480 3.14485 3.54293 3.73506 3.81738 3.92551 4.04023 4.18554 4.23450 4.32632 4.44535 4.52156 4.57301 4.62639 4.64775 4.70696 4.72895 4.75371 4.76265 4.77247 4.79408 4.82694 4.88334 5.03390 5.08814 5.27247 5.28116 5.42277 5.47809 5.51403 5.55605 5.58691 5.62296 5.67832 6.09625 6.24690 6.92178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.513 4.513 2 Si 1.281 2.719 3 C -0.472 4.472 4 C -0.512 4.512 5 O -0.566 6.566 6 C 0.143 3.857 7 C -0.179 4.179 8 C -0.098 4.098 9 C -0.144 4.144 10 C -0.098 4.098 11 C -0.125 4.125 12 C 0.060 3.940 13 N -0.470 5.470 14 C 0.020 3.980 15 C -0.094 4.094 16 C 0.006 3.994 17 N -0.652 5.652 18 Si 0.980 3.020 19 H -0.251 1.251 20 H -0.261 1.261 21 H -0.236 1.236 22 C 0.012 3.988 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.138 0.862 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.133 0.867 36 H 0.052 0.948 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.133 0.867 41 H 0.344 0.656 42 H 0.079 0.921 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.308 -1.205 0.242 1.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.615 4.615 2 Si 1.419 2.581 3 C -0.579 4.579 4 C -0.614 4.614 5 O -0.519 6.519 6 C 0.098 3.902 7 C -0.198 4.198 8 C -0.117 4.117 9 C -0.162 4.162 10 C -0.116 4.116 11 C -0.126 4.126 12 C -0.067 4.067 13 N -0.192 5.192 14 C -0.110 4.110 15 C -0.114 4.114 16 C -0.242 4.242 17 N -0.266 5.266 18 Si 0.797 3.203 19 H -0.175 1.175 20 H -0.185 1.185 21 H -0.159 1.159 22 C -0.118 4.118 23 H 0.091 0.909 24 H 0.099 0.901 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.106 0.894 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.155 0.845 33 H 0.163 0.837 34 H 0.160 0.840 35 H 0.151 0.849 36 H 0.071 0.929 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.089 0.911 40 H 0.151 0.849 41 H 0.162 0.838 42 H 0.097 0.903 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.124 -0.774 0.548 0.957 hybrid contribution 0.602 -0.769 -0.733 1.221 sum 0.726 -1.543 -0.185 1.715 Atomic orbital electron populations 1.27058 1.24808 1.04672 1.04994 0.76938 0.63396 0.63777 0.53975 1.26349 1.06908 1.19280 1.05323 1.27138 1.06729 1.08704 1.18873 1.83820 1.82856 1.20670 1.64583 1.17971 0.92574 0.82084 0.97535 1.21559 0.96672 0.97380 1.04141 1.21309 1.00304 0.92146 0.97898 1.21372 0.93469 1.00885 1.00492 1.21151 0.97672 0.94066 0.98756 1.19871 0.95904 0.93457 1.03381 1.21602 0.91152 1.00648 0.93334 1.69114 1.07823 1.24327 1.17905 1.23742 0.93182 0.93409 1.00655 1.22160 0.91488 0.97053 1.00683 1.30174 0.99455 0.94002 1.00540 1.68075 1.22094 1.10486 1.25951 0.85033 0.76818 0.81606 0.76800 1.17450 1.18501 1.15850 1.23821 0.88657 1.01626 0.97648 0.90936 0.90133 0.91260 0.90868 0.89404 0.90796 0.91726 0.89935 0.90924 0.84451 0.83739 0.84029 0.84943 0.92934 0.89227 0.89418 0.91123 0.84895 0.83821 0.90300 0.89376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.51 0.06 8.17 113.37 0.93 0.98 16 2 Si 1.28 -0.51 12.04 68.60 0.83 0.32 16 3 C -0.47 0.13 8.65 113.37 0.98 1.11 16 4 C -0.51 -0.17 7.49 113.37 0.85 0.68 16 5 O -0.57 -2.80 8.02 -92.43 -0.74 -3.54 16 6 C 0.14 0.73 4.53 22.51 0.10 0.83 16 7 C -0.18 -0.59 8.46 22.36 0.19 -0.40 16 8 C -0.10 -0.10 10.04 22.25 0.22 0.13 16 9 C -0.14 -0.09 10.04 22.28 0.22 0.13 16 10 C -0.10 -0.21 9.64 22.25 0.21 0.01 16 11 C -0.13 -0.53 4.29 -19.77 -0.08 -0.62 16 12 C 0.06 0.22 4.49 85.56 0.38 0.60 16 13 N -0.47 -1.89 6.40 -932.59 -5.97 -7.86 16 14 C 0.02 0.03 6.86 83.57 0.57 0.60 16 15 C -0.09 0.06 4.03 -11.20 -0.05 0.01 16 16 C 0.01 -0.01 5.15 88.67 0.46 0.45 16 17 N -0.65 -0.52 12.71 24.11 0.31 -0.22 16 18 Si 0.98 -3.34 29.56 68.60 2.03 -1.31 16 19 H -0.25 0.40 7.11 99.48 0.71 1.10 16 20 H -0.26 0.37 7.11 99.48 0.71 1.08 16 21 H -0.24 0.70 7.11 99.48 0.71 1.41 16 22 C 0.01 0.02 7.17 83.57 0.60 0.62 16 23 H 0.07 0.00 7.96 -2.39 -0.02 -0.02 16 24 H 0.08 -0.11 7.96 -2.39 -0.02 -0.13 16 25 H 0.07 0.04 6.99 -2.39 -0.02 0.02 16 26 H 0.07 0.03 7.96 -2.39 -0.02 0.01 16 27 H 0.09 -0.21 7.96 -2.39 -0.02 -0.23 16 28 H 0.07 0.01 7.96 -2.39 -0.02 -0.01 16 29 H 0.06 0.13 7.38 -2.39 -0.02 0.11 16 30 H 0.08 -0.11 7.96 -2.39 -0.02 -0.13 16 31 H 0.07 0.03 6.45 -2.39 -0.02 0.01 16 32 H 0.14 0.14 7.63 -2.91 -0.02 0.12 16 33 H 0.14 -0.49 8.06 -2.91 -0.02 -0.52 16 34 H 0.14 -0.49 8.06 -2.91 -0.02 -0.52 16 35 H 0.13 -0.09 8.02 -2.91 -0.02 -0.12 16 36 H 0.05 0.15 7.40 -2.39 -0.02 0.13 16 37 H 0.09 0.29 4.37 -2.39 -0.01 0.28 16 38 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 39 H 0.07 0.12 7.66 -2.39 -0.02 0.10 16 40 H 0.13 -0.46 7.87 -2.39 -0.02 -0.48 16 41 H 0.34 -0.68 8.23 -92.71 -0.76 -1.45 16 42 H 0.08 0.25 6.93 -2.39 -0.02 0.23 16 43 H 0.09 0.09 8.14 -2.38 -0.02 0.07 16 Total: 0.00 -9.30 348.19 3.02 -6.28 By element: Atomic # 1 Polarization: 0.19 SS G_CDS: 0.98 Total: 1.17 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 5.59 Total: 5.15 kcal Atomic # 7 Polarization: -2.41 SS G_CDS: -5.67 Total: -8.07 kcal Atomic # 8 Polarization: -2.80 SS G_CDS: -0.74 Total: -3.54 kcal Atomic # 14 Polarization: -3.85 SS G_CDS: 2.85 Total: -0.99 kcal Total: -9.30 3.02 -6.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237724503.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.086 kcal (2) G-P(sol) polarization free energy of solvation -9.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds