Wall clock time and date at job start Tue Mar 31 2020 06:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36519 * 124.92260 * 2 1 4 4 C 1.35533 * 109.75130 * 179.97438 * 3 2 1 5 5 C 1.48233 * 126.65248 * 179.97438 * 4 3 2 6 6 C 1.39445 * 120.12658 * 130.04524 * 5 4 3 7 7 C 1.37973 * 119.86850 * 179.97438 * 6 5 4 8 8 C 1.38366 * 120.12683 * 359.75418 * 7 6 5 9 9 C 1.38309 * 120.26168 * 0.50771 * 8 7 6 10 10 C 1.50700 * 119.93515 * 179.76990 * 9 8 7 11 11 C 1.50706 * 109.47062 * 269.71776 * 10 9 8 12 12 H 1.07998 * 119.99503 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00434 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99826 * 359.72891 * 13 11 10 15 15 Si 1.86800 * 120.00406 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46758 * 269.72576 * 15 13 11 17 17 H 1.48499 * 109.47026 * 29.72423 * 15 13 11 18 18 H 1.48496 * 109.47474 * 149.72459 * 15 13 11 19 19 C 1.38017 * 120.12852 * 359.48555 * 9 8 7 20 20 C 1.47163 * 106.69255 * 0.26555 * 4 3 2 21 21 C 1.39424 * 133.97467 * 180.53807 * 20 4 3 22 22 C 1.36694 * 119.78659 * 179.52382 * 21 20 4 23 23 C 1.38801 * 120.47967 * 359.73335 * 22 21 20 24 24 C 1.37750 * 120.64179 * 359.95936 * 23 22 21 25 25 C 1.37782 * 124.92300 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.46639 * 90.02501 * 1 2 3 27 27 H 1.09004 * 109.46892 * 210.02181 * 1 2 3 28 28 H 1.08994 * 109.47100 * 330.02729 * 1 2 3 29 29 H 1.07995 * 125.12300 * 359.96551 * 3 2 1 30 30 H 1.07999 * 120.06602 * 359.96543 * 6 5 4 31 31 H 1.07995 * 119.93906 * 180.02562 * 7 6 5 32 32 H 1.07999 * 119.86766 * 180.25039 * 8 7 6 33 33 H 1.09004 * 109.47406 * 149.72482 * 10 9 8 34 34 H 1.08993 * 109.47274 * 29.72109 * 10 9 8 35 35 H 0.97000 * 120.00236 * 0.27947 * 14 13 11 36 36 H 1.08006 * 120.06773 * 180.27360 * 19 9 8 37 37 H 1.08003 * 120.10721 * 359.23292 * 21 20 4 38 38 H 1.07998 * 119.75907 * 179.71360 * 22 21 20 39 39 H 1.07999 * 119.67005 * 179.97438 * 23 22 21 40 40 H 1.08002 * 120.10421 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2466 1.1194 0.0000 4 6 3.5547 0.7647 0.0006 5 6 4.7200 1.6809 0.0002 6 6 5.7496 1.5041 0.9239 7 6 6.8320 2.3597 0.9185 8 6 6.8994 3.3884 -0.0044 9 6 5.8787 3.5719 -0.9194 10 6 5.9573 4.6979 -1.9179 11 6 5.3110 5.9296 -1.3380 12 1 4.8862 5.9000 -0.3455 13 6 5.2628 7.0945 -2.0740 14 7 5.7857 7.1323 -3.2801 15 14 4.4624 8.6214 -1.3548 16 1 3.0203 8.6378 -1.7091 17 1 4.6089 8.6078 0.1228 18 1 5.1214 9.8324 -1.9065 19 6 4.7910 2.7223 -0.9237 20 6 3.5938 -0.7064 -0.0056 21 6 4.6224 -1.6476 0.0015 22 6 4.3226 -2.9812 0.0021 23 6 3.0011 -3.4058 0.0013 24 6 1.9702 -2.4922 0.0007 25 6 2.2538 -1.1297 0.0005 26 1 -0.3632 -0.0004 -1.0277 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3633 0.8902 0.5134 29 1 1.8780 2.1345 -0.0005 30 1 5.6997 0.6991 1.6422 31 1 7.6302 2.2235 1.6331 32 1 7.7505 4.0532 -0.0075 33 1 5.4367 4.4105 -2.8315 34 1 7.0020 4.9089 -2.1461 35 1 6.2016 6.3395 -3.6535 36 1 3.9966 2.8638 -1.6416 37 1 5.6528 -1.3239 0.0017 38 1 5.1198 -3.7099 0.0029 39 1 2.7792 -4.4627 0.0014 40 1 0.9451 -2.8321 -0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239530355.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:23 Heat of formation + Delta-G solvation = 69.308325 kcal Electronic energy + Delta-G solvation = -21479.355851 eV Core-core repulsion = 18416.514244 eV Total energy + Delta-G solvation = -3062.841606 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.132 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.32286 -38.49461 -37.08468 -34.05098 -33.13395 -31.02428 -30.41133 -30.32752 -28.58324 -26.64062 -25.96226 -23.15715 -22.80711 -22.17210 -21.52289 -20.46228 -19.20401 -17.10610 -16.57568 -16.42926 -15.67730 -15.48572 -15.43066 -14.43334 -14.31421 -13.97378 -13.89128 -13.70718 -13.16592 -13.03676 -12.94134 -12.71095 -12.44592 -12.23827 -11.83315 -11.56299 -11.35435 -11.29065 -11.14134 -10.87994 -10.68246 -10.31779 -10.15257 -9.86437 -9.58847 -8.93247 -8.37675 -8.33483 -8.18809 -7.81429 -7.27557 -6.37247 -4.08251 1.09168 1.57670 1.87514 2.13351 2.74365 2.85702 3.42440 3.46501 3.62503 3.91214 4.42411 4.55983 4.59768 4.63644 4.88223 4.93585 4.97678 5.07841 5.20935 5.27842 5.37541 5.46699 5.53660 5.61868 5.67534 5.73850 5.83085 5.93625 6.04415 6.12440 6.30794 6.45036 6.54341 6.60146 6.73081 6.79596 6.80417 7.05065 7.12631 7.14669 7.21594 7.25454 7.29583 7.70108 7.71111 8.14473 8.44763 8.84857 9.62744 11.01655 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020001 B = 0.003721 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.610462 B = 7523.189364 C = 8423.201389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.487 5.487 3 C 0.061 3.939 4 C -0.120 4.120 5 C -0.016 4.016 6 C -0.134 4.134 7 C -0.121 4.121 8 C -0.125 4.125 9 C -0.028 4.028 10 C 0.035 3.965 11 C -0.590 4.590 12 H 0.051 0.949 13 C 0.016 3.984 14 N -0.912 5.912 15 Si 1.072 2.928 16 H -0.288 1.288 17 H -0.288 1.288 18 H -0.284 1.284 19 C -0.112 4.112 20 C -0.092 4.092 21 C -0.064 4.064 22 C -0.152 4.152 23 C -0.103 4.103 24 C -0.132 4.132 25 C 0.094 3.906 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.173 0.827 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.018 0.982 34 H 0.019 0.981 35 H 0.269 0.731 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.066 -18.956 8.030 22.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.170 5.170 3 C -0.064 4.064 4 C -0.127 4.127 5 C -0.017 4.017 6 C -0.152 4.152 7 C -0.139 4.139 8 C -0.143 4.143 9 C -0.028 4.028 10 C -0.002 4.002 11 C -0.629 4.629 12 H 0.069 0.931 13 C -0.188 4.188 14 N -0.549 5.549 15 Si 0.901 3.099 16 H -0.215 1.215 17 H -0.214 1.214 18 H -0.209 1.209 19 C -0.131 4.131 20 C -0.096 4.096 21 C -0.083 4.083 22 C -0.171 4.171 23 C -0.123 4.123 24 C -0.152 4.152 25 C -0.012 4.012 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.190 0.810 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.036 0.964 34 H 0.037 0.963 35 H 0.080 0.920 36 H 0.133 0.867 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.800 -17.333 7.713 20.914 hybrid contribution 0.202 -1.541 0.337 1.590 sum -8.598 -18.874 8.050 22.248 Atomic orbital electron populations 1.21928 0.77211 1.04060 1.02991 1.43670 1.05815 1.04246 1.63230 1.21943 0.89727 0.91015 1.03698 1.18964 0.91858 0.90517 1.11371 1.17983 0.92805 0.94509 0.96375 1.20877 0.94545 1.00344 0.99459 1.20940 0.97943 0.96008 0.99035 1.21091 0.99423 0.97837 0.95997 1.20334 0.92140 0.94361 0.95984 1.18474 0.97301 0.91561 0.92851 1.21925 1.41209 0.96036 1.03691 0.93076 1.25873 0.96284 1.01544 0.95099 1.70752 1.35587 1.32753 1.15774 0.83494 0.76112 0.75331 0.75008 1.21457 1.21413 1.20946 1.21077 0.98500 0.94673 0.98811 1.19091 0.92099 0.92569 1.05863 1.20315 0.98325 0.91926 0.97719 1.20610 0.96361 0.95421 1.04750 1.20742 0.92321 0.98605 1.00583 1.19960 0.99287 0.89133 1.06860 1.18244 0.90074 0.88229 1.04643 0.91289 0.90314 0.89790 0.81021 0.87153 0.86955 0.86664 0.96350 0.96275 0.92017 0.86690 0.85985 0.86210 0.86054 0.86659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.63 11.01 59.85 0.66 1.29 16 2 N -0.49 -6.04 3.17 -121.53 -0.39 -6.43 16 3 C 0.06 0.87 11.16 -16.43 -0.18 0.69 16 4 C -0.12 -1.96 5.75 -103.13 -0.59 -2.55 16 5 C -0.02 -0.29 5.79 -104.91 -0.61 -0.90 16 6 C -0.13 -2.27 9.76 -39.23 -0.38 -2.65 16 7 C -0.12 -2.09 10.03 -39.63 -0.40 -2.48 16 8 C -0.13 -2.52 9.69 -39.51 -0.38 -2.90 16 9 C -0.03 -0.63 5.06 -104.68 -0.53 -1.16 16 10 C 0.03 0.91 4.41 -29.03 -0.13 0.78 16 11 C -0.59 -16.82 9.09 -34.44 -0.31 -17.14 16 12 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 13 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 14 N -0.91 -27.80 13.65 55.43 0.76 -27.04 16 15 Si 1.07 25.33 29.90 -169.99 -5.08 20.25 16 16 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 19 C -0.11 -2.30 9.36 -39.23 -0.37 -2.67 16 20 C -0.09 -1.39 6.33 -104.97 -0.66 -2.06 16 21 C -0.06 -0.87 10.04 -39.70 -0.40 -1.27 16 22 C -0.15 -1.73 9.98 -39.93 -0.40 -2.13 16 23 C -0.10 -1.08 10.01 -39.55 -0.40 -1.48 16 24 C -0.13 -1.48 9.94 -39.41 -0.39 -1.87 16 25 C 0.09 1.27 6.80 -83.99 -0.57 0.70 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.49 8.08 -51.93 -0.42 0.07 16 28 H 0.08 0.54 8.13 -51.93 -0.42 0.12 16 29 H 0.17 2.16 8.06 -52.49 -0.42 1.74 16 30 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 33 H 0.02 0.49 7.96 -51.93 -0.41 0.08 16 34 H 0.02 0.51 7.94 -51.93 -0.41 0.10 16 35 H 0.27 8.16 7.22 -40.82 -0.29 7.87 16 36 H 0.12 2.34 8.06 -52.48 -0.42 1.91 16 37 H 0.12 1.59 8.06 -52.48 -0.42 1.16 16 38 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.12 1.00 8.05 -52.49 -0.42 0.58 16 LS Contribution 345.46 15.07 5.21 5.21 Total: -1.00 -32.75 345.46 -11.04 -43.79 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -5.39 Total: 1.67 kcal Atomic # 6 Polarization: -31.31 SS G_CDS: -6.15 Total: -37.46 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: 0.37 Total: -33.47 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.08 Total: 20.25 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.75 -11.04 -43.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239530355.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.103 kcal (2) G-P(sol) polarization free energy of solvation -32.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds