Wall clock time and date at job start Tue Mar 31 2020 06:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36519 * 124.92260 * 2 1 4 4 C 1.35533 * 109.75130 * 179.97438 * 3 2 1 5 5 C 1.48233 * 126.65248 * 179.97438 * 4 3 2 6 6 C 1.39445 * 120.12658 * 130.04524 * 5 4 3 7 7 C 1.37973 * 119.86850 * 179.97438 * 6 5 4 8 8 C 1.38366 * 120.12683 * 359.75418 * 7 6 5 9 9 C 1.38309 * 120.26168 * 0.50771 * 8 7 6 10 10 C 1.50700 * 119.93515 * 179.76990 * 9 8 7 11 11 C 1.50706 * 109.47062 * 269.71776 * 10 9 8 12 12 H 1.07998 * 119.99503 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00434 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99826 * 359.72891 * 13 11 10 15 15 Si 1.86800 * 120.00406 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46758 * 269.72576 * 15 13 11 17 17 H 1.48499 * 109.47026 * 29.72423 * 15 13 11 18 18 H 1.48496 * 109.47474 * 149.72459 * 15 13 11 19 19 C 1.38017 * 120.12852 * 359.48555 * 9 8 7 20 20 C 1.47163 * 106.69255 * 0.26555 * 4 3 2 21 21 C 1.39424 * 133.97467 * 180.53807 * 20 4 3 22 22 C 1.36694 * 119.78659 * 179.52382 * 21 20 4 23 23 C 1.38801 * 120.47967 * 359.73335 * 22 21 20 24 24 C 1.37750 * 120.64179 * 359.95936 * 23 22 21 25 25 C 1.37782 * 124.92300 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.46639 * 90.02501 * 1 2 3 27 27 H 1.09004 * 109.46892 * 210.02181 * 1 2 3 28 28 H 1.08994 * 109.47100 * 330.02729 * 1 2 3 29 29 H 1.07995 * 125.12300 * 359.96551 * 3 2 1 30 30 H 1.07999 * 120.06602 * 359.96543 * 6 5 4 31 31 H 1.07995 * 119.93906 * 180.02562 * 7 6 5 32 32 H 1.07999 * 119.86766 * 180.25039 * 8 7 6 33 33 H 1.09004 * 109.47406 * 149.72482 * 10 9 8 34 34 H 1.08993 * 109.47274 * 29.72109 * 10 9 8 35 35 H 0.97000 * 120.00236 * 0.27947 * 14 13 11 36 36 H 1.08006 * 120.06773 * 180.27360 * 19 9 8 37 37 H 1.08003 * 120.10721 * 359.23292 * 21 20 4 38 38 H 1.07998 * 119.75907 * 179.71360 * 22 21 20 39 39 H 1.07999 * 119.67005 * 179.97438 * 23 22 21 40 40 H 1.08002 * 120.10421 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2466 1.1194 0.0000 4 6 3.5547 0.7647 0.0006 5 6 4.7200 1.6809 0.0002 6 6 5.7496 1.5041 0.9239 7 6 6.8320 2.3597 0.9185 8 6 6.8994 3.3884 -0.0044 9 6 5.8787 3.5719 -0.9194 10 6 5.9573 4.6979 -1.9179 11 6 5.3110 5.9296 -1.3380 12 1 4.8862 5.9000 -0.3455 13 6 5.2628 7.0945 -2.0740 14 7 5.7857 7.1323 -3.2801 15 14 4.4624 8.6214 -1.3548 16 1 3.0203 8.6378 -1.7091 17 1 4.6089 8.6078 0.1228 18 1 5.1214 9.8324 -1.9065 19 6 4.7910 2.7223 -0.9237 20 6 3.5938 -0.7064 -0.0056 21 6 4.6224 -1.6476 0.0015 22 6 4.3226 -2.9812 0.0021 23 6 3.0011 -3.4058 0.0013 24 6 1.9702 -2.4922 0.0007 25 6 2.2538 -1.1297 0.0005 26 1 -0.3632 -0.0004 -1.0277 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3633 0.8902 0.5134 29 1 1.8780 2.1345 -0.0005 30 1 5.6997 0.6991 1.6422 31 1 7.6302 2.2235 1.6331 32 1 7.7505 4.0532 -0.0075 33 1 5.4367 4.4105 -2.8315 34 1 7.0020 4.9089 -2.1461 35 1 6.2016 6.3395 -3.6535 36 1 3.9966 2.8638 -1.6416 37 1 5.6528 -1.3239 0.0017 38 1 5.1198 -3.7099 0.0029 39 1 2.7792 -4.4627 0.0014 40 1 0.9451 -2.8321 -0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239530355.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:22 Heat of formation + Delta-G solvation = 54.382439 kcal Electronic energy + Delta-G solvation = -21480.003086 eV Core-core repulsion = 18416.514244 eV Total energy + Delta-G solvation = -3063.488841 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.132 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.29604 -40.00778 -37.97268 -35.94950 -34.44665 -32.78186 -31.61485 -31.21370 -29.57830 -28.55667 -26.92166 -25.24266 -23.90409 -23.30818 -22.72616 -21.75988 -20.42347 -18.96588 -17.93625 -17.35936 -17.10666 -16.41249 -16.33026 -15.88329 -15.83135 -15.59885 -15.16137 -14.82332 -14.74353 -14.18206 -14.02476 -13.83183 -13.71291 -13.41420 -13.26390 -13.16483 -12.94630 -12.52269 -12.47725 -12.20229 -12.06650 -11.95201 -11.75070 -11.56495 -10.98991 -10.64952 -10.59103 -9.69513 -9.47874 -9.13880 -8.69203 -8.37274 -6.42852 0.07943 0.44758 0.60022 0.72548 1.50673 1.60165 1.71361 1.78813 1.87470 2.54106 2.92491 3.03418 3.12173 3.74033 3.77546 3.86187 4.07361 4.12586 4.15923 4.24964 4.30528 4.32523 4.42994 4.57392 4.59805 4.67083 4.68589 4.74043 4.78046 4.93863 4.98369 4.99793 5.13881 5.22726 5.29115 5.52450 5.58133 5.68554 5.70942 5.80761 5.85196 5.90174 5.98128 6.13599 6.18166 6.23987 6.37856 6.52912 7.37665 8.68124 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.020001 B = 0.003721 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.610462 B = 7523.189364 C = 8423.201389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.483 5.483 3 C 0.065 3.935 4 C -0.161 4.161 5 C -0.004 4.004 6 C -0.127 4.127 7 C -0.107 4.107 8 C -0.143 4.143 9 C -0.058 4.058 10 C 0.042 3.958 11 C -0.602 4.602 12 H 0.046 0.954 13 C -0.036 4.036 14 N -0.935 5.935 15 Si 1.122 2.878 16 H -0.270 1.270 17 H -0.271 1.271 18 H -0.280 1.280 19 C -0.129 4.129 20 C -0.118 4.118 21 C -0.090 4.090 22 C -0.148 4.148 23 C -0.101 4.101 24 C -0.131 4.131 25 C 0.076 3.924 26 H 0.078 0.922 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.180 0.820 30 H 0.136 0.864 31 H 0.151 0.849 32 H 0.113 0.887 33 H -0.005 1.005 34 H 0.000 1.000 35 H 0.256 0.744 36 H 0.102 0.898 37 H 0.117 0.883 38 H 0.144 0.856 39 H 0.156 0.844 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.804 -21.243 10.123 25.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.165 5.165 3 C -0.062 4.062 4 C -0.169 4.169 5 C -0.005 4.005 6 C -0.146 4.146 7 C -0.124 4.124 8 C -0.161 4.161 9 C -0.058 4.058 10 C 0.005 3.995 11 C -0.639 4.639 12 H 0.064 0.936 13 C -0.233 4.233 14 N -0.572 5.572 15 Si 0.942 3.058 16 H -0.196 1.196 17 H -0.196 1.196 18 H -0.205 1.205 19 C -0.147 4.147 20 C -0.122 4.122 21 C -0.109 4.109 22 C -0.166 4.166 23 C -0.120 4.120 24 C -0.151 4.151 25 C -0.029 4.029 26 H 0.097 0.903 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.198 0.802 30 H 0.154 0.846 31 H 0.168 0.832 32 H 0.131 0.869 33 H 0.014 0.986 34 H 0.018 0.982 35 H 0.065 0.935 36 H 0.121 0.879 37 H 0.136 0.864 38 H 0.162 0.838 39 H 0.174 0.826 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.556 -19.665 9.808 24.379 hybrid contribution 0.690 -1.041 -0.298 1.284 sum -9.866 -20.705 9.510 24.829 Atomic orbital electron populations 1.22263 0.74531 1.05891 1.04198 1.43928 1.07353 1.03344 1.61899 1.22105 0.89684 0.92030 1.02369 1.18978 0.91967 0.91250 1.14659 1.18153 0.93809 0.93428 0.95070 1.21222 0.93769 1.00466 0.99094 1.21268 0.98753 0.94197 0.98208 1.21140 0.98902 0.99297 0.96739 1.20096 0.94371 0.94516 0.96775 1.18266 0.95373 0.92756 0.93119 1.22224 1.41010 0.97208 1.03482 0.93577 1.27482 0.96039 1.05079 0.94709 1.70883 1.37174 1.32205 1.16982 0.82885 0.76067 0.71586 0.75245 1.19555 1.19562 1.20514 1.20992 0.97909 0.95941 0.99866 1.19286 0.93652 0.92063 1.07216 1.20454 0.97972 0.92928 0.99516 1.20968 0.97816 0.94889 1.02968 1.21201 0.91633 1.00305 0.98893 1.20368 1.01117 0.88060 1.05570 1.18590 0.89681 0.89421 1.05234 0.90335 0.88197 0.88373 0.80248 0.84581 0.83173 0.86920 0.98642 0.98219 0.93501 0.87949 0.86447 0.83811 0.82612 0.83777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.93 11.01 127.77 1.41 2.34 16 2 N -0.48 -11.23 3.17 -538.42 -1.71 -12.93 16 3 C 0.07 1.84 11.16 83.34 0.93 2.77 16 4 C -0.16 -5.28 5.75 -18.90 -0.11 -5.39 16 5 C 0.00 -0.14 5.79 -20.05 -0.12 -0.26 16 6 C -0.13 -4.19 9.76 22.50 0.22 -3.97 16 7 C -0.11 -3.55 10.03 22.24 0.22 -3.32 16 8 C -0.14 -5.88 9.69 22.32 0.22 -5.67 16 9 C -0.06 -2.72 5.06 -19.90 -0.10 -2.82 16 10 C 0.04 2.33 4.41 29.10 0.13 2.45 16 11 C -0.60 -35.70 9.09 25.60 0.23 -35.47 16 12 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 13 C -0.04 -2.12 5.46 84.65 0.46 -1.66 16 14 N -0.94 -59.05 13.65 21.45 0.29 -58.76 16 15 Si 1.12 51.24 29.90 68.60 2.05 53.29 16 16 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 17 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 19 C -0.13 -5.55 9.36 22.50 0.21 -5.34 16 20 C -0.12 -3.50 6.33 -20.09 -0.13 -3.63 16 21 C -0.09 -2.35 10.04 22.19 0.22 -2.13 16 22 C -0.15 -2.96 9.98 22.04 0.22 -2.74 16 23 C -0.10 -1.74 10.01 22.29 0.22 -1.52 16 24 C -0.13 -2.50 9.94 22.38 0.22 -2.28 16 25 C 0.08 1.93 6.80 38.99 0.26 2.20 16 26 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.10 0.90 8.08 -2.38 -0.02 0.88 16 28 H 0.10 1.01 8.13 -2.39 -0.02 0.99 16 29 H 0.18 4.55 8.06 -2.91 -0.02 4.53 16 30 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 31 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 32 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 33 H 0.00 -0.27 7.96 -2.39 -0.02 -0.29 16 34 H 0.00 -0.02 7.94 -2.39 -0.02 -0.04 16 35 H 0.26 16.39 7.22 -92.71 -0.67 15.72 16 36 H 0.10 4.51 8.06 -2.91 -0.02 4.49 16 37 H 0.12 3.01 8.06 -2.91 -0.02 2.99 16 38 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 39 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 40 H 0.14 1.86 8.05 -2.91 -0.02 1.83 16 Total: -1.00 -74.31 345.46 6.49 -67.82 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 1.12 Total: 17.02 kcal Atomic # 6 Polarization: -71.17 SS G_CDS: 4.73 Total: -66.44 kcal Atomic # 7 Polarization: -70.28 SS G_CDS: -1.41 Total: -71.69 kcal Atomic # 14 Polarization: 51.24 SS G_CDS: 2.05 Total: 53.29 kcal Total: -74.31 6.49 -67.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239530355.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.205 kcal (2) G-P(sol) polarization free energy of solvation -74.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds