Wall clock time and date at job start Tue Mar 31 2020 06:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36826 * 125.04131 * 2 1 4 4 C 1.34223 * 109.94745 * 180.22171 * 3 2 1 5 5 C 1.46529 * 106.97299 * 359.56773 * 4 3 2 6 6 C 1.39477 * 133.96817 * 180.26289 * 5 4 3 7 7 C 1.38769 * 119.41494 * 180.02562 * 6 5 4 8 8 C 1.48397 * 119.94787 * 180.02562 * 7 6 5 9 9 C 1.39334 * 120.11599 * 359.67845 * 8 7 6 10 10 C 1.38025 * 119.87286 * 179.72404 * 9 8 7 11 11 C 1.38319 * 120.12010 * 0.55438 * 10 9 8 12 12 C 1.50702 * 119.87819 * 179.74227 * 11 10 9 13 13 C 1.50700 * 109.46985 * 269.97916 * 12 11 10 14 14 H 1.08000 * 120.00251 * 0.02562 * 13 12 11 15 15 C 1.37886 * 119.99654 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00078 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99788 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47162 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47119 * 120.00436 * 17 15 13 20 20 H 1.48504 * 109.47010 * 240.00247 * 17 15 13 21 21 C 1.38328 * 120.24558 * 359.72637 * 11 10 9 22 22 C 1.38016 * 120.11976 * 359.97438 * 21 11 10 23 23 C 1.39889 * 120.10878 * 359.95988 * 7 6 5 24 24 C 1.36483 * 120.69914 * 0.02562 * 23 7 6 25 25 C 1.37703 * 125.04683 * 179.74013 * 2 1 3 26 26 H 1.09001 * 109.47244 * 270.25490 * 1 2 3 27 27 H 1.08996 * 109.47605 * 30.25880 * 1 2 3 28 28 H 1.09002 * 109.47281 * 150.26248 * 1 2 3 29 29 H 1.08003 * 125.02798 * 0.08788 * 3 2 1 30 30 H 1.08002 * 126.51608 * 179.83712 * 4 3 2 31 31 H 1.08003 * 120.29196 * 359.97438 * 6 5 4 32 32 H 1.08000 * 120.06819 * 0.02562 * 9 8 7 33 33 H 1.07999 * 119.94049 * 180.25433 * 10 9 8 34 34 H 1.08998 * 109.47152 * 29.98120 * 12 11 10 35 35 H 1.08999 * 109.46918 * 149.98120 * 12 11 10 36 36 H 0.96997 * 120.00504 * 179.97438 * 16 15 13 37 37 H 1.08000 * 119.94015 * 180.02562 * 21 11 10 38 38 H 1.08003 * 120.06015 * 180.02562 * 22 21 11 39 39 H 1.08002 * 119.64984 * 180.02562 * 23 7 6 40 40 H 1.07994 * 119.90190 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2506 1.1202 0.0000 4 6 3.5465 0.7707 -0.0049 5 6 3.5946 -0.6938 0.0023 6 6 4.6297 -1.6286 0.0063 7 6 4.3253 -2.9825 0.0126 8 6 5.4173 -3.9873 0.0175 9 6 6.7478 -3.5739 0.0090 10 6 7.7595 -4.5127 0.0194 11 6 7.4545 -5.8618 0.0266 12 6 8.5634 -6.8823 0.0321 13 6 8.9327 -7.2303 -1.3869 14 1 8.4164 -6.7594 -2.2104 15 6 9.9306 -8.1493 -1.6339 16 7 10.5597 -8.7223 -0.6313 17 14 10.3888 -8.5802 -3.3928 18 1 9.5390 -7.8030 -4.3303 19 1 11.8168 -8.2475 -3.6279 20 1 10.1753 -10.0324 -3.6183 21 6 6.1352 -6.2779 0.0291 22 6 5.1157 -5.3477 0.0250 23 6 2.9907 -3.4016 0.0157 24 6 1.9742 -2.4908 0.0121 25 6 2.2558 -1.1273 0.0051 26 1 -0.3634 0.0046 1.0276 27 1 -0.3634 0.8876 -0.5178 28 1 -0.3634 -0.8923 -0.5098 29 1 1.8825 2.1356 0.0014 30 1 4.3930 1.4414 -0.0085 31 1 5.6591 -1.3017 0.0037 32 1 6.9872 -2.5208 -0.0007 33 1 8.7912 -4.1934 0.0171 34 1 9.4335 -6.4705 0.5434 35 1 8.2282 -7.7803 0.5510 36 1 11.2614 -9.3691 -0.8050 37 1 5.9026 -7.3325 0.0352 38 1 4.0860 -5.6736 0.0274 39 1 2.7622 -4.4572 0.0210 40 1 0.9485 -2.8287 0.0149 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239941025.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:31 Heat of formation + Delta-G solvation = 76.148703 kcal Electronic energy + Delta-G solvation = -20946.030108 eV Core-core repulsion = 17883.485123 eV Total energy + Delta-G solvation = -3062.544985 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.132 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.33993 -38.90531 -36.86935 -33.50607 -33.04607 -31.85970 -30.54211 -29.66245 -28.86126 -27.04595 -25.86192 -23.51228 -23.03665 -21.54883 -21.12005 -20.29519 -19.80877 -17.26361 -16.53922 -16.32821 -16.03215 -15.51892 -14.89626 -14.53750 -14.37151 -13.88123 -13.67953 -13.39384 -13.24715 -13.20277 -12.95567 -12.61034 -12.59207 -12.36738 -12.09796 -11.70749 -11.30155 -11.23269 -10.99784 -10.89698 -10.62413 -10.48140 -10.05444 -9.75282 -9.52060 -9.41292 -8.51132 -8.41602 -8.25998 -7.87353 -7.10856 -6.02675 -4.06687 1.07019 1.28562 2.11218 2.45089 2.64268 2.65651 3.30647 3.38249 3.43856 3.95948 4.43401 4.44763 4.58542 4.64779 4.68583 4.83293 4.94480 5.01653 5.09191 5.31377 5.36727 5.37520 5.46903 5.57088 5.63457 5.76239 5.87471 6.03343 6.09095 6.18838 6.25402 6.36470 6.63965 6.67558 6.70654 6.72610 6.81711 7.13329 7.17917 7.21128 7.23465 7.26232 7.52667 7.75812 7.87594 7.93230 8.33507 8.99039 9.57126 11.06850 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.034974 B = 0.002688 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.399093 B =10414.711730 C =10555.646421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.492 5.492 3 C 0.043 3.957 4 C -0.203 4.203 5 C -0.106 4.106 6 C -0.070 4.070 7 C -0.049 4.049 8 C -0.079 4.079 9 C -0.111 4.111 10 C -0.124 4.124 11 C -0.029 4.029 12 C 0.045 3.955 13 C -0.510 4.510 14 H 0.058 0.942 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.895 3.105 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.124 4.124 22 C -0.111 4.111 23 C -0.090 4.090 24 C -0.129 4.129 25 C 0.088 3.912 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.165 0.835 30 H 0.146 0.854 31 H 0.126 0.874 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.029 0.971 35 H 0.029 0.971 36 H 0.261 0.739 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.128 0.872 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.683 17.988 2.565 26.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.176 5.176 3 C -0.082 4.082 4 C -0.228 4.228 5 C -0.110 4.110 6 C -0.089 4.089 7 C -0.050 4.050 8 C -0.079 4.079 9 C -0.129 4.129 10 C -0.142 4.142 11 C -0.029 4.029 12 C 0.008 3.992 13 C -0.548 4.548 14 H 0.076 0.924 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.722 3.278 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.210 1.210 21 C -0.142 4.142 22 C -0.129 4.129 23 C -0.109 4.109 24 C -0.149 4.149 25 C -0.017 4.017 26 H 0.085 0.915 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.182 0.818 30 H 0.163 0.837 31 H 0.144 0.856 32 H 0.132 0.868 33 H 0.137 0.863 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.137 0.863 38 H 0.132 0.868 39 H 0.146 0.854 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -19.912 17.900 2.599 26.901 hybrid contribution 0.217 -0.247 -0.983 1.037 sum -19.695 17.653 1.616 26.498 Atomic orbital electron populations 1.21888 0.77540 1.03983 1.02747 1.43784 1.05651 1.04417 1.63762 1.21726 0.90555 0.90903 1.04971 1.21698 0.95932 0.92952 1.12191 1.19126 0.92020 0.93407 1.06451 1.20619 0.98045 0.91038 0.99176 1.18585 0.92494 0.92237 1.01671 1.18472 0.92017 0.92267 1.05097 1.21090 0.91999 0.98918 1.00866 1.21025 0.98820 0.92832 1.01482 1.20771 0.95740 0.95151 0.91205 1.18393 0.90932 0.92066 0.97760 1.21102 1.18634 1.23560 0.91495 0.92386 1.25018 0.96130 0.96022 0.97231 1.69964 1.24361 1.28490 1.30537 0.86483 0.78300 0.78193 0.84780 1.19635 1.20947 1.20951 1.21019 0.92413 0.99223 1.01537 1.21068 0.98650 0.92166 1.01036 1.20659 0.91442 0.99230 0.99575 1.19608 0.99286 0.89087 1.06930 1.18299 0.90123 0.88176 1.05137 0.91526 0.90136 0.90238 0.81760 0.83665 0.85613 0.86786 0.86287 0.95269 0.95282 0.92906 0.86305 0.86836 0.85406 0.86635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.46 11.02 59.85 0.66 1.12 16 2 N -0.49 -4.85 3.18 -121.76 -0.39 -5.24 16 3 C 0.04 0.39 11.28 -16.74 -0.19 0.20 16 4 C -0.20 -2.22 11.08 -37.66 -0.42 -2.64 16 5 C -0.11 -1.43 6.37 -105.15 -0.67 -2.10 16 6 C -0.07 -1.01 9.48 -38.92 -0.37 -1.38 16 7 C -0.05 -0.74 5.87 -104.90 -0.62 -1.35 16 8 C -0.08 -1.34 5.88 -104.90 -0.62 -1.95 16 9 C -0.11 -1.93 9.42 -39.25 -0.37 -2.30 16 10 C -0.12 -2.46 9.68 -39.63 -0.38 -2.84 16 11 C -0.03 -0.63 5.07 -104.56 -0.53 -1.16 16 12 C 0.05 1.17 5.10 -29.03 -0.15 1.03 16 13 C -0.51 -14.38 9.09 -34.44 -0.31 -14.70 16 14 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 17 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 C -0.12 -2.45 9.68 -39.63 -0.38 -2.84 16 22 C -0.11 -1.92 9.43 -39.25 -0.37 -2.29 16 23 C -0.09 -1.20 9.35 -39.60 -0.37 -1.57 16 24 C -0.13 -1.54 9.87 -39.85 -0.39 -1.94 16 25 C 0.09 1.11 6.81 -83.92 -0.57 0.53 16 26 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.08 0.41 8.08 -51.93 -0.42 -0.01 16 29 H 0.17 0.87 8.06 -52.48 -0.42 0.45 16 30 H 0.15 1.30 8.06 -52.49 -0.42 0.87 16 31 H 0.13 1.65 6.19 -52.48 -0.33 1.33 16 32 H 0.11 1.69 6.20 -52.49 -0.33 1.36 16 33 H 0.12 2.29 8.06 -52.49 -0.42 1.86 16 34 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 35 H 0.03 0.78 8.08 -51.93 -0.42 0.37 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 38 H 0.11 1.62 6.18 -52.48 -0.32 1.30 16 39 H 0.13 1.50 6.17 -52.49 -0.32 1.17 16 40 H 0.12 1.08 8.05 -52.49 -0.42 0.66 16 LS Contribution 338.86 15.07 5.11 5.11 Total: -1.00 -32.50 338.86 -10.77 -43.27 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -5.06 Total: 0.65 kcal Atomic # 6 Polarization: -28.50 SS G_CDS: -6.15 Total: -34.65 kcal Atomic # 7 Polarization: -31.40 SS G_CDS: 0.35 Total: -31.05 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.50 -10.77 -43.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239941025.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.415 kcal (2) G-P(sol) polarization free energy of solvation -32.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds