Wall clock time and date at job start Tue Mar 31 2020 06:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36826 * 125.04131 * 2 1 4 4 C 1.34223 * 109.94745 * 180.22171 * 3 2 1 5 5 C 1.46529 * 106.97299 * 359.56773 * 4 3 2 6 6 C 1.39477 * 133.96817 * 180.26289 * 5 4 3 7 7 C 1.38769 * 119.41494 * 180.02562 * 6 5 4 8 8 C 1.48397 * 119.94787 * 180.02562 * 7 6 5 9 9 C 1.39334 * 120.11599 * 359.67845 * 8 7 6 10 10 C 1.38025 * 119.87286 * 179.72404 * 9 8 7 11 11 C 1.38319 * 120.12010 * 0.55438 * 10 9 8 12 12 C 1.50702 * 119.87819 * 179.74227 * 11 10 9 13 13 C 1.50700 * 109.46985 * 269.97916 * 12 11 10 14 14 H 1.08000 * 120.00251 * 0.02562 * 13 12 11 15 15 C 1.37886 * 119.99654 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00078 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99788 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47162 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47119 * 120.00436 * 17 15 13 20 20 H 1.48504 * 109.47010 * 240.00247 * 17 15 13 21 21 C 1.38328 * 120.24558 * 359.72637 * 11 10 9 22 22 C 1.38016 * 120.11976 * 359.97438 * 21 11 10 23 23 C 1.39889 * 120.10878 * 359.95988 * 7 6 5 24 24 C 1.36483 * 120.69914 * 0.02562 * 23 7 6 25 25 C 1.37703 * 125.04683 * 179.74013 * 2 1 3 26 26 H 1.09001 * 109.47244 * 270.25490 * 1 2 3 27 27 H 1.08996 * 109.47605 * 30.25880 * 1 2 3 28 28 H 1.09002 * 109.47281 * 150.26248 * 1 2 3 29 29 H 1.08003 * 125.02798 * 0.08788 * 3 2 1 30 30 H 1.08002 * 126.51608 * 179.83712 * 4 3 2 31 31 H 1.08003 * 120.29196 * 359.97438 * 6 5 4 32 32 H 1.08000 * 120.06819 * 0.02562 * 9 8 7 33 33 H 1.07999 * 119.94049 * 180.25433 * 10 9 8 34 34 H 1.08998 * 109.47152 * 29.98120 * 12 11 10 35 35 H 1.08999 * 109.46918 * 149.98120 * 12 11 10 36 36 H 0.96997 * 120.00504 * 179.97438 * 16 15 13 37 37 H 1.08000 * 119.94015 * 180.02562 * 21 11 10 38 38 H 1.08003 * 120.06015 * 180.02562 * 22 21 11 39 39 H 1.08002 * 119.64984 * 180.02562 * 23 7 6 40 40 H 1.07994 * 119.90190 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2506 1.1202 0.0000 4 6 3.5465 0.7707 -0.0049 5 6 3.5946 -0.6938 0.0023 6 6 4.6297 -1.6286 0.0063 7 6 4.3253 -2.9825 0.0126 8 6 5.4173 -3.9873 0.0175 9 6 6.7478 -3.5739 0.0090 10 6 7.7595 -4.5127 0.0194 11 6 7.4545 -5.8618 0.0266 12 6 8.5634 -6.8823 0.0321 13 6 8.9327 -7.2303 -1.3869 14 1 8.4164 -6.7594 -2.2104 15 6 9.9306 -8.1493 -1.6339 16 7 10.5597 -8.7223 -0.6313 17 14 10.3888 -8.5802 -3.3928 18 1 9.5390 -7.8030 -4.3303 19 1 11.8168 -8.2475 -3.6279 20 1 10.1753 -10.0324 -3.6183 21 6 6.1352 -6.2779 0.0291 22 6 5.1157 -5.3477 0.0250 23 6 2.9907 -3.4016 0.0157 24 6 1.9742 -2.4908 0.0121 25 6 2.2558 -1.1273 0.0051 26 1 -0.3634 0.0046 1.0276 27 1 -0.3634 0.8876 -0.5178 28 1 -0.3634 -0.8923 -0.5098 29 1 1.8825 2.1356 0.0014 30 1 4.3930 1.4414 -0.0085 31 1 5.6591 -1.3017 0.0037 32 1 6.9872 -2.5208 -0.0007 33 1 8.7912 -4.1934 0.0171 34 1 9.4335 -6.4705 0.5434 35 1 8.2282 -7.7803 0.5510 36 1 11.2614 -9.3691 -0.8050 37 1 5.9026 -7.3325 0.0352 38 1 4.0860 -5.6736 0.0274 39 1 2.7622 -4.4572 0.0210 40 1 0.9485 -2.8287 0.0149 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239941025.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:31 Heat of formation + Delta-G solvation = 61.168852 kcal Electronic energy + Delta-G solvation = -20946.679683 eV Core-core repulsion = 17883.485123 eV Total energy + Delta-G solvation = -3063.194560 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.132 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.16775 -40.28157 -37.96088 -35.42978 -33.80415 -33.46315 -31.91727 -30.98170 -29.92579 -28.38174 -26.89555 -25.16922 -24.25265 -22.91147 -22.32157 -21.17899 -21.08979 -18.52884 -18.10228 -17.56103 -17.20240 -16.57792 -16.17350 -15.97239 -15.71353 -14.96567 -14.90114 -14.57705 -14.48427 -14.34853 -14.02401 -13.91646 -13.56123 -13.44419 -13.24346 -13.20854 -12.99747 -12.65782 -12.59198 -12.28628 -12.15453 -12.03599 -11.49899 -11.40578 -11.35605 -10.62347 -10.61360 -9.77271 -9.73464 -8.80024 -8.34358 -8.13848 -6.33858 -0.06341 0.31461 0.62803 1.16502 1.39162 1.39652 1.53576 1.85176 1.98813 2.39604 2.83090 3.09871 3.28549 3.68173 3.78313 3.95474 4.00557 4.11179 4.19382 4.23760 4.37552 4.48467 4.53106 4.53515 4.64909 4.73304 4.75314 4.83471 4.87564 5.02494 5.10802 5.17930 5.22472 5.34421 5.39829 5.47560 5.48639 5.65489 5.75493 5.82619 5.85407 5.94204 6.09533 6.12459 6.26405 6.31053 6.47702 6.78858 7.34585 8.88973 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.034974 B = 0.002688 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.399093 B =10414.711730 C =10555.646421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.491 5.491 3 C 0.060 3.940 4 C -0.231 4.231 5 C -0.133 4.133 6 C -0.079 4.079 7 C -0.075 4.075 8 C -0.065 4.065 9 C -0.112 4.112 10 C -0.133 4.133 11 C -0.065 4.065 12 C 0.056 3.944 13 C -0.527 4.527 14 H 0.053 0.947 15 C 0.003 3.997 16 N -0.930 5.930 17 Si 0.966 3.034 18 H -0.266 1.266 19 H -0.275 1.275 20 H -0.275 1.275 21 C -0.132 4.132 22 C -0.108 4.108 23 C -0.101 4.101 24 C -0.124 4.124 25 C 0.075 3.925 26 H 0.078 0.922 27 H 0.106 0.894 28 H 0.085 0.915 29 H 0.207 0.793 30 H 0.158 0.842 31 H 0.128 0.872 32 H 0.139 0.861 33 H 0.115 0.885 34 H 0.003 0.997 35 H 0.004 0.996 36 H 0.266 0.734 37 H 0.118 0.882 38 H 0.147 0.853 39 H 0.141 0.859 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.864 20.352 1.520 30.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.174 5.174 3 C -0.065 4.065 4 C -0.256 4.256 5 C -0.138 4.138 6 C -0.097 4.097 7 C -0.076 4.076 8 C -0.065 4.065 9 C -0.130 4.130 10 C -0.151 4.151 11 C -0.065 4.065 12 C 0.019 3.981 13 C -0.565 4.565 14 H 0.071 0.929 15 C -0.195 4.195 16 N -0.570 5.570 17 Si 0.791 3.209 18 H -0.191 1.191 19 H -0.201 1.201 20 H -0.200 1.200 21 C -0.150 4.150 22 C -0.126 4.126 23 C -0.120 4.120 24 C -0.145 4.145 25 C -0.032 4.032 26 H 0.097 0.903 27 H 0.125 0.875 28 H 0.104 0.896 29 H 0.224 0.776 30 H 0.175 0.825 31 H 0.145 0.855 32 H 0.157 0.843 33 H 0.133 0.867 34 H 0.021 0.979 35 H 0.023 0.977 36 H 0.075 0.925 37 H 0.136 0.864 38 H 0.164 0.836 39 H 0.159 0.841 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -23.121 20.278 1.560 30.793 hybrid contribution 1.000 -0.753 -0.600 1.388 sum -22.121 19.525 0.960 29.521 Atomic orbital electron populations 1.22222 0.74927 1.05672 1.04086 1.44163 1.07298 1.03703 1.62262 1.22398 0.89894 0.92338 1.01895 1.21991 0.97621 0.91991 1.13981 1.19496 0.92488 0.94806 1.06982 1.20739 0.98663 0.91164 0.99158 1.18548 0.92684 0.92017 1.04396 1.18798 0.92523 0.92844 1.02366 1.21314 0.91781 0.99675 1.00215 1.21033 0.99478 0.92510 1.02060 1.20479 0.95532 0.95113 0.95390 1.18121 0.91485 0.92172 0.96354 1.21393 1.18905 1.23785 0.92382 0.92910 1.25941 0.95924 0.95769 1.01839 1.70083 1.24936 1.29089 1.32912 0.85374 0.78173 0.78178 0.79202 1.19052 1.20085 1.20000 1.21058 0.92153 0.99870 1.01926 1.21333 0.99501 0.91816 0.99936 1.20825 0.90937 1.00309 0.99899 1.19881 1.00335 0.88790 1.05448 1.18567 0.90486 0.89242 1.04884 0.90315 0.87526 0.89636 0.77635 0.82471 0.85459 0.84296 0.86680 0.97865 0.97729 0.92532 0.86420 0.83575 0.84090 0.83818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.50 11.02 127.77 1.41 1.91 16 2 N -0.49 -7.86 3.18 -539.12 -1.71 -9.58 16 3 C 0.06 0.86 11.28 83.00 0.94 1.80 16 4 C -0.23 -4.55 11.08 23.52 0.26 -4.29 16 5 C -0.13 -3.40 6.37 -20.21 -0.13 -3.53 16 6 C -0.08 -2.20 9.48 22.70 0.22 -1.99 16 7 C -0.08 -2.20 5.87 -20.04 -0.12 -2.32 16 8 C -0.07 -2.19 5.88 -20.04 -0.12 -2.31 16 9 C -0.11 -3.94 9.42 22.48 0.21 -3.73 16 10 C -0.13 -5.52 9.68 22.24 0.22 -5.31 16 11 C -0.07 -3.03 5.07 -19.82 -0.10 -3.13 16 12 C 0.06 3.09 5.10 29.10 0.15 3.24 16 13 C -0.53 -31.01 9.09 25.60 0.23 -30.77 16 14 H 0.05 3.09 7.74 -2.91 -0.02 3.06 16 15 C 0.00 0.19 5.46 84.66 0.46 0.65 16 16 N -0.93 -57.07 13.29 21.45 0.28 -56.78 16 17 Si 0.97 45.27 29.54 68.60 2.03 47.30 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 21 C -0.13 -5.39 9.68 22.24 0.22 -5.18 16 22 C -0.11 -3.68 9.43 22.48 0.21 -3.47 16 23 C -0.10 -2.48 9.35 22.26 0.21 -2.28 16 24 C -0.12 -2.65 9.87 22.10 0.22 -2.43 16 25 C 0.07 1.69 6.81 39.07 0.27 1.96 16 26 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 28 H 0.08 0.53 8.08 -2.39 -0.02 0.51 16 29 H 0.21 1.10 8.06 -2.91 -0.02 1.07 16 30 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 31 H 0.13 3.30 6.19 -2.91 -0.02 3.29 16 32 H 0.14 4.08 6.20 -2.91 -0.02 4.06 16 33 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 34 H 0.00 0.18 8.08 -2.39 -0.02 0.16 16 35 H 0.00 0.26 8.08 -2.39 -0.02 0.24 16 36 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 37 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 38 H 0.15 3.91 6.18 -2.91 -0.02 3.89 16 39 H 0.14 2.96 6.17 -2.91 -0.02 2.94 16 40 H 0.14 2.14 8.05 -2.91 -0.02 2.12 16 Total: -1.00 -73.29 338.86 6.38 -66.90 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 1.04 Total: 13.35 kcal Atomic # 6 Polarization: -65.93 SS G_CDS: 4.75 Total: -61.18 kcal Atomic # 7 Polarization: -64.93 SS G_CDS: -1.43 Total: -66.36 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -73.29 6.38 -66.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239941025.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.070 kcal (2) G-P(sol) polarization free energy of solvation -73.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds