Wall clock time and date at job start Tue Mar 31 2020 06:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36778 * 125.07688 * 2 1 4 4 C 1.34358 * 109.88852 * 179.73318 * 3 2 1 5 5 C 1.46243 * 106.99792 * 0.37798 * 4 3 2 6 6 C 1.37749 * 125.07119 * 179.97438 * 2 1 3 7 7 C 1.39105 * 133.36718 * 359.97438 * 6 2 1 8 8 C 1.37901 * 120.18633 * 180.02562 * 7 6 2 9 9 C 1.38493 * 120.81473 * 359.97438 * 8 7 6 10 10 C 1.38908 * 120.24126 * 0.03554 * 9 8 7 11 11 C 1.48175 * 120.30496 * 179.97438 * 10 9 8 12 12 C 1.39453 * 120.13093 * 129.72666 * 11 10 9 13 13 C 1.37970 * 119.86458 * 179.81520 * 12 11 10 14 14 C 1.38358 * 120.13566 * 0.43944 * 13 12 11 15 15 C 1.38321 * 120.26066 * 359.78855 * 14 13 12 16 16 C 1.50703 * 119.93261 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.47080 * 270.02421 * 16 15 14 18 18 H 1.07994 * 120.00671 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99553 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00103 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 120.00109 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47323 * 89.99869 * 21 19 17 23 23 H 1.48506 * 109.47137 * 209.99553 * 21 19 17 24 24 H 1.48497 * 109.47501 * 329.99421 * 21 19 17 25 25 C 1.38015 * 120.13294 * 0.02562 * 15 14 13 26 26 H 1.09003 * 109.47594 * 270.02478 * 1 2 3 27 27 H 1.08998 * 109.47222 * 30.02796 * 1 2 3 28 28 H 1.09001 * 109.47356 * 150.01978 * 1 2 3 29 29 H 1.08005 * 125.05504 * 359.94620 * 3 2 1 30 30 H 1.07998 * 126.49929 * 180.02562 * 4 3 2 31 31 H 1.08005 * 119.90937 * 0.05239 * 7 6 2 32 32 H 1.07999 * 119.59245 * 179.97438 * 8 7 6 33 33 H 1.08011 * 119.88051 * 180.02562 * 9 8 7 34 34 H 1.07998 * 120.06679 * 0.02562 * 12 11 10 35 35 H 1.08006 * 119.93500 * 180.20812 * 13 12 11 36 36 H 1.07993 * 119.87241 * 179.76385 * 14 13 12 37 37 H 1.08996 * 109.46694 * 30.02915 * 16 15 14 38 38 H 1.09004 * 109.46736 * 150.02125 * 16 15 14 39 39 H 0.96996 * 120.00559 * 180.02562 * 20 19 17 40 40 H 1.08001 * 120.06230 * 179.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2510 1.1194 0.0000 4 6 3.5476 0.7674 0.0059 5 6 3.5938 -0.6943 0.0007 6 6 2.2564 -1.1274 0.0005 7 6 1.9776 -2.4902 0.0016 8 6 3.0065 -3.4084 0.0024 9 6 4.3278 -2.9934 0.0016 10 6 4.6356 -1.6389 0.0008 11 6 6.0488 -1.1933 0.0005 12 6 6.4846 -0.2482 -0.9277 13 6 7.8008 0.1656 -0.9205 14 6 8.6898 -0.3618 -0.0008 15 6 8.2644 -1.3030 0.9192 16 6 9.2391 -1.8730 1.9173 17 6 9.8908 -3.1018 1.3375 18 1 9.6255 -3.4369 0.3457 19 6 10.8259 -3.7984 2.0733 20 7 11.3944 -4.8712 1.5676 21 14 11.2844 -3.2193 3.7891 22 1 10.3882 -3.8611 4.7841 23 1 12.6925 -3.5926 4.0778 24 1 11.1371 -1.7438 3.8694 25 6 6.9494 -1.7219 0.9243 26 1 -0.3634 0.0004 1.0277 27 1 -0.3633 0.8897 -0.5143 28 1 -0.3634 -0.8902 -0.5135 29 1 1.8839 2.1351 -0.0008 30 1 4.3950 1.4369 0.0077 31 1 0.9525 -2.8302 0.0013 32 1 2.7791 -4.4642 0.0036 33 1 5.1218 -3.7257 0.0018 34 1 5.7925 0.1615 -1.6485 35 1 8.1388 0.9000 -1.6367 36 1 9.7199 -0.0376 -0.0015 37 1 10.0030 -1.1294 2.1444 38 1 8.7087 -2.1399 2.8314 39 1 12.0520 -5.3614 2.0854 40 1 6.6186 -2.4572 1.6429 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241821859.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:43 Heat of formation + Delta-G solvation = 78.958563 kcal Electronic energy + Delta-G solvation = -21513.421013 eV Core-core repulsion = 18450.997872 eV Total energy + Delta-G solvation = -3062.423141 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.132 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.27418 -38.73898 -36.81866 -33.66479 -32.89466 -31.71428 -31.19503 -29.18908 -28.30085 -27.37785 -26.31086 -23.20660 -22.86974 -21.67237 -21.32432 -20.31125 -19.20608 -16.96009 -16.73388 -16.36668 -15.84298 -15.44609 -15.27907 -14.54947 -14.51222 -14.09519 -13.85908 -13.49481 -12.98708 -12.94402 -12.79701 -12.68991 -12.41371 -12.23085 -11.95619 -11.67429 -11.41995 -11.35209 -11.20611 -10.98492 -10.59763 -10.23962 -10.01810 -9.87282 -9.57172 -9.32788 -8.55582 -8.26526 -8.12682 -7.85078 -7.31821 -6.04658 -4.03455 1.01622 1.68451 2.10123 2.16259 2.73863 2.74421 3.31042 3.38593 3.41805 3.98411 4.44153 4.48251 4.53072 4.66649 4.79788 4.89414 4.99549 5.11854 5.24801 5.27683 5.40195 5.47654 5.56379 5.62944 5.68026 5.83636 5.90508 6.01630 6.07686 6.19299 6.27209 6.48446 6.60957 6.67906 6.76312 6.82144 6.83081 6.99083 7.06358 7.10915 7.19376 7.25569 7.29647 7.63947 7.64721 7.75799 8.52848 9.01190 9.55794 11.08341 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.023186 B = 0.003612 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.318487 B = 7750.220256 C = 8272.309720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.494 5.494 3 C 0.038 3.962 4 C -0.191 4.191 5 C -0.097 4.097 6 C 0.095 3.905 7 C -0.141 4.141 8 C -0.092 4.092 9 C -0.137 4.137 10 C 0.017 3.983 11 C -0.055 4.055 12 C -0.125 4.125 13 C -0.124 4.124 14 C -0.118 4.118 15 C -0.030 4.030 16 C 0.014 3.986 17 C -0.511 4.511 18 H 0.074 0.926 19 C 0.069 3.931 20 N -0.900 5.900 21 Si 0.877 3.123 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.265 1.265 25 C -0.104 4.104 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.165 0.835 30 H 0.146 0.854 31 H 0.114 0.886 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.118 0.882 37 H 0.028 0.972 38 H 0.023 0.977 39 H 0.264 0.736 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.705 11.059 -3.720 24.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.178 5.178 3 C -0.086 4.086 4 C -0.216 4.216 5 C -0.101 4.101 6 C -0.010 4.010 7 C -0.162 4.162 8 C -0.111 4.111 9 C -0.157 4.157 10 C 0.017 3.983 11 C -0.055 4.055 12 C -0.143 4.143 13 C -0.142 4.142 14 C -0.136 4.136 15 C -0.030 4.030 16 C -0.023 4.023 17 C -0.549 4.549 18 H 0.092 0.908 19 C -0.133 4.133 20 N -0.539 5.539 21 Si 0.704 3.296 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.189 1.189 25 C -0.122 4.122 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.182 0.818 30 H 0.164 0.836 31 H 0.132 0.868 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.046 0.954 38 H 0.041 0.959 39 H 0.074 0.926 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -21.931 10.955 -3.682 24.790 hybrid contribution 0.242 0.134 0.853 0.897 sum -21.689 11.089 -2.830 24.524 Atomic orbital electron populations 1.21861 0.77612 1.03847 1.02674 1.43752 1.05550 1.04369 1.64171 1.21757 0.90496 0.90872 1.05439 1.21715 0.95784 0.93102 1.11005 1.19091 0.91277 0.93299 1.06470 1.18166 0.89953 0.88211 1.04629 1.19922 0.99180 0.89130 1.07954 1.20723 0.92003 0.98801 0.99608 1.21116 0.96570 0.94717 1.03248 1.18295 0.91002 0.91840 0.97203 1.18639 0.91422 0.98118 0.97276 1.20920 0.95796 0.98368 0.99203 1.20945 0.93550 1.00561 0.99164 1.21120 0.99276 0.97589 0.95594 1.20185 0.93835 0.92900 0.96116 1.18815 0.93351 0.96806 0.93337 1.20939 1.22171 1.08138 1.03683 0.90775 1.24997 0.95648 0.94626 0.97986 1.69900 1.28290 1.17844 1.37871 0.86815 0.77811 0.79860 0.85103 1.20161 1.21290 1.18911 1.21112 0.92701 0.99493 0.98849 0.91601 0.90188 0.90365 0.81763 0.83593 0.86841 0.85691 0.85306 0.86933 0.86846 0.86416 0.95401 0.95875 0.92635 0.86273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.52 11.02 59.84 0.66 1.18 16 2 N -0.49 -5.32 3.18 -121.81 -0.39 -5.71 16 3 C 0.04 0.40 11.29 -16.72 -0.19 0.21 16 4 C -0.19 -2.49 10.32 -37.74 -0.39 -2.88 16 5 C -0.10 -1.47 6.03 -104.90 -0.63 -2.11 16 6 C 0.10 1.29 6.80 -84.00 -0.57 0.71 16 7 C -0.14 -1.73 9.94 -39.38 -0.39 -2.13 16 8 C -0.09 -1.19 10.00 -39.61 -0.40 -1.59 16 9 C -0.14 -2.11 9.50 -39.24 -0.37 -2.49 16 10 C 0.02 0.28 5.49 -104.67 -0.57 -0.29 16 11 C -0.05 -0.98 5.43 -104.92 -0.57 -1.55 16 12 C -0.12 -2.08 8.91 -39.23 -0.35 -2.42 16 13 C -0.12 -2.08 10.03 -39.64 -0.40 -2.48 16 14 C -0.12 -2.28 9.69 -39.51 -0.38 -2.67 16 15 C -0.03 -0.65 5.06 -104.67 -0.53 -1.18 16 16 C 0.01 0.34 4.17 -29.04 -0.12 0.22 16 17 C -0.51 -14.65 9.65 -34.44 -0.33 -14.98 16 18 H 0.07 2.33 7.98 -52.49 -0.42 1.91 16 19 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 20 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 21 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 25 C -0.10 -2.08 9.16 -39.22 -0.36 -2.44 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16 29 H 0.17 1.10 8.06 -52.48 -0.42 0.68 16 30 H 0.15 1.79 7.87 -52.49 -0.41 1.38 16 31 H 0.11 1.08 8.06 -52.48 -0.42 0.66 16 32 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.13 2.00 8.04 -52.48 -0.42 1.58 16 34 H 0.11 1.66 7.90 -52.49 -0.41 1.25 16 35 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 36 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 37 H 0.03 0.67 7.14 -51.93 -0.37 0.30 16 38 H 0.02 0.55 7.51 -51.93 -0.39 0.16 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.12 2.37 8.04 -52.49 -0.42 1.94 16 LS Contribution 340.79 15.07 5.14 5.14 Total: -1.00 -33.06 340.79 -10.54 -43.60 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -5.40 Total: 2.02 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: -6.00 Total: -34.96 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.39 Total: -32.71 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.06 -10.54 -43.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241821859.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.562 kcal (2) G-P(sol) polarization free energy of solvation -33.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds