Wall clock time and date at job start Tue Mar 31 2020 06:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36778 * 125.07688 * 2 1 4 4 C 1.34358 * 109.88852 * 179.73318 * 3 2 1 5 5 C 1.46243 * 106.99792 * 0.37798 * 4 3 2 6 6 C 1.37749 * 125.07119 * 179.97438 * 2 1 3 7 7 C 1.39105 * 133.36718 * 359.97438 * 6 2 1 8 8 C 1.37901 * 120.18633 * 180.02562 * 7 6 2 9 9 C 1.38493 * 120.81473 * 359.97438 * 8 7 6 10 10 C 1.38908 * 120.24126 * 0.03554 * 9 8 7 11 11 C 1.48175 * 120.30496 * 179.97438 * 10 9 8 12 12 C 1.39453 * 120.13093 * 129.72666 * 11 10 9 13 13 C 1.37970 * 119.86458 * 179.81520 * 12 11 10 14 14 C 1.38358 * 120.13566 * 0.43944 * 13 12 11 15 15 C 1.38321 * 120.26066 * 359.78855 * 14 13 12 16 16 C 1.50703 * 119.93261 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.47080 * 270.02421 * 16 15 14 18 18 H 1.07994 * 120.00671 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99553 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00103 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 120.00109 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47323 * 89.99869 * 21 19 17 23 23 H 1.48506 * 109.47137 * 209.99553 * 21 19 17 24 24 H 1.48497 * 109.47501 * 329.99421 * 21 19 17 25 25 C 1.38015 * 120.13294 * 0.02562 * 15 14 13 26 26 H 1.09003 * 109.47594 * 270.02478 * 1 2 3 27 27 H 1.08998 * 109.47222 * 30.02796 * 1 2 3 28 28 H 1.09001 * 109.47356 * 150.01978 * 1 2 3 29 29 H 1.08005 * 125.05504 * 359.94620 * 3 2 1 30 30 H 1.07998 * 126.49929 * 180.02562 * 4 3 2 31 31 H 1.08005 * 119.90937 * 0.05239 * 7 6 2 32 32 H 1.07999 * 119.59245 * 179.97438 * 8 7 6 33 33 H 1.08011 * 119.88051 * 180.02562 * 9 8 7 34 34 H 1.07998 * 120.06679 * 0.02562 * 12 11 10 35 35 H 1.08006 * 119.93500 * 180.20812 * 13 12 11 36 36 H 1.07993 * 119.87241 * 179.76385 * 14 13 12 37 37 H 1.08996 * 109.46694 * 30.02915 * 16 15 14 38 38 H 1.09004 * 109.46736 * 150.02125 * 16 15 14 39 39 H 0.96996 * 120.00559 * 180.02562 * 20 19 17 40 40 H 1.08001 * 120.06230 * 179.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2510 1.1194 0.0000 4 6 3.5476 0.7674 0.0059 5 6 3.5938 -0.6943 0.0007 6 6 2.2564 -1.1274 0.0005 7 6 1.9776 -2.4902 0.0016 8 6 3.0065 -3.4084 0.0024 9 6 4.3278 -2.9934 0.0016 10 6 4.6356 -1.6389 0.0008 11 6 6.0488 -1.1933 0.0005 12 6 6.4846 -0.2482 -0.9277 13 6 7.8008 0.1656 -0.9205 14 6 8.6898 -0.3618 -0.0008 15 6 8.2644 -1.3030 0.9192 16 6 9.2391 -1.8730 1.9173 17 6 9.8908 -3.1018 1.3375 18 1 9.6255 -3.4369 0.3457 19 6 10.8259 -3.7984 2.0733 20 7 11.3944 -4.8712 1.5676 21 14 11.2844 -3.2193 3.7891 22 1 10.3882 -3.8611 4.7841 23 1 12.6925 -3.5926 4.0778 24 1 11.1371 -1.7438 3.8694 25 6 6.9494 -1.7219 0.9243 26 1 -0.3634 0.0004 1.0277 27 1 -0.3633 0.8897 -0.5143 28 1 -0.3634 -0.8902 -0.5135 29 1 1.8839 2.1351 -0.0008 30 1 4.3950 1.4369 0.0077 31 1 0.9525 -2.8302 0.0013 32 1 2.7791 -4.4642 0.0036 33 1 5.1218 -3.7257 0.0018 34 1 5.7925 0.1615 -1.6485 35 1 8.1388 0.9000 -1.6367 36 1 9.7199 -0.0376 -0.0015 37 1 10.0030 -1.1294 2.1444 38 1 8.7087 -2.1399 2.8314 39 1 12.0520 -5.3614 2.0854 40 1 6.6186 -2.4572 1.6429 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241821859.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:42 Heat of formation + Delta-G solvation = 62.646373 kcal Electronic energy + Delta-G solvation = -21514.128362 eV Core-core repulsion = 18450.997872 eV Total energy + Delta-G solvation = -3063.130490 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.132 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.19748 -40.14714 -37.87863 -35.48684 -34.14447 -33.16381 -32.59677 -30.23103 -29.69761 -28.97147 -27.03915 -24.88869 -24.27321 -22.88238 -22.38924 -21.67000 -20.34829 -18.97823 -17.92289 -17.37901 -17.16495 -16.39579 -16.34369 -16.17602 -15.92580 -15.60416 -14.91920 -14.77865 -14.45045 -14.09140 -13.96576 -13.81167 -13.53104 -13.48682 -13.43293 -13.08159 -12.86565 -12.58160 -12.52033 -12.27260 -12.14063 -11.91198 -11.68570 -11.60493 -11.41947 -10.79700 -10.60344 -9.60796 -9.37700 -9.11643 -8.36251 -8.30533 -6.35738 -0.10161 0.60305 0.64167 0.81609 1.35642 1.37036 1.49474 1.84614 1.98467 2.34688 2.83815 3.03263 3.08741 3.63579 3.95741 3.98883 4.06289 4.14616 4.19144 4.29134 4.33190 4.36258 4.50562 4.59419 4.63637 4.73846 4.76377 4.80127 4.86626 4.96730 5.02379 5.07589 5.18190 5.24888 5.31212 5.52499 5.55435 5.60608 5.63087 5.75733 5.83539 5.89237 6.00201 6.18020 6.29428 6.29873 6.48865 6.70088 7.27474 8.86085 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.023186 B = 0.003612 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.318487 B = 7750.220256 C = 8272.309720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.490 5.490 3 C 0.065 3.935 4 C -0.230 4.230 5 C -0.117 4.117 6 C 0.078 3.922 7 C -0.127 4.127 8 C -0.102 4.102 9 C -0.154 4.154 10 C -0.016 4.016 11 C -0.049 4.049 12 C -0.119 4.119 13 C -0.112 4.112 14 C -0.134 4.134 15 C -0.061 4.061 16 C 0.021 3.979 17 C -0.519 4.519 18 H 0.027 0.973 19 C 0.008 3.992 20 N -0.949 5.949 21 Si 0.951 3.049 22 H -0.266 1.266 23 H -0.280 1.280 24 H -0.246 1.246 25 C -0.124 4.124 26 H 0.077 0.923 27 H 0.107 0.893 28 H 0.087 0.913 29 H 0.208 0.792 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.149 0.851 33 H 0.111 0.889 34 H 0.136 0.864 35 H 0.151 0.849 36 H 0.122 0.878 37 H 0.034 0.966 38 H 0.025 0.975 39 H 0.268 0.732 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.794 13.613 -3.497 28.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.174 5.174 3 C -0.060 4.060 4 C -0.255 4.255 5 C -0.121 4.121 6 C -0.028 4.028 7 C -0.148 4.148 8 C -0.121 4.121 9 C -0.173 4.173 10 C -0.017 4.017 11 C -0.049 4.049 12 C -0.137 4.137 13 C -0.130 4.130 14 C -0.152 4.152 15 C -0.061 4.061 16 C -0.016 4.016 17 C -0.557 4.557 18 H 0.045 0.955 19 C -0.189 4.189 20 N -0.589 5.589 21 Si 0.773 3.227 22 H -0.191 1.191 23 H -0.205 1.205 24 H -0.169 1.169 25 C -0.142 4.142 26 H 0.096 0.904 27 H 0.125 0.875 28 H 0.106 0.894 29 H 0.225 0.775 30 H 0.163 0.837 31 H 0.165 0.835 32 H 0.166 0.834 33 H 0.129 0.871 34 H 0.154 0.846 35 H 0.169 0.831 36 H 0.140 0.860 37 H 0.052 0.948 38 H 0.043 0.957 39 H 0.077 0.923 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -25.057 13.521 -3.467 28.682 hybrid contribution 0.983 -0.641 0.654 1.343 sum -24.074 12.880 -2.814 27.448 Atomic orbital electron populations 1.22221 0.74686 1.05770 1.04049 1.44113 1.07280 1.03459 1.62533 1.22386 0.89601 0.92424 1.01639 1.21846 0.97349 0.92133 1.14129 1.19361 0.91810 0.94384 1.06582 1.18406 0.89957 0.89447 1.05031 1.20282 1.00472 0.88633 1.05374 1.20958 0.91030 1.00368 0.99792 1.21157 0.97593 0.94300 1.04244 1.18317 0.90561 0.92690 1.00127 1.18864 0.92163 0.97547 0.96339 1.21232 0.96201 0.97490 0.98774 1.21296 0.92975 1.00223 0.98493 1.21254 1.00116 0.97773 0.96074 1.20079 0.93956 0.94870 0.97160 1.18652 0.93873 0.95036 0.94015 1.21138 1.22615 1.09956 1.02008 0.95509 1.25983 0.95415 0.94556 1.02938 1.70056 1.29323 1.19473 1.40057 0.85650 0.77704 0.80391 0.78911 1.19134 1.20542 1.16897 1.21079 0.92960 1.00198 0.99949 0.90429 0.87471 0.89423 0.77529 0.83658 0.83506 0.83370 0.87123 0.84588 0.83099 0.86019 0.94800 0.95701 0.92302 0.87593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.59 11.02 127.77 1.41 2.00 16 2 N -0.49 -8.79 3.18 -539.28 -1.71 -10.51 16 3 C 0.06 1.12 11.29 83.03 0.94 2.06 16 4 C -0.23 -5.61 10.32 23.46 0.24 -5.37 16 5 C -0.12 -3.47 6.03 -20.04 -0.12 -3.59 16 6 C 0.08 1.94 6.80 38.99 0.27 2.20 16 7 C -0.13 -2.85 9.94 22.40 0.22 -2.63 16 8 C -0.10 -2.60 10.00 22.25 0.22 -2.37 16 9 C -0.15 -4.97 9.50 22.49 0.21 -4.76 16 10 C -0.02 -0.56 5.49 -19.89 -0.11 -0.67 16 11 C -0.05 -1.83 5.43 -20.06 -0.11 -1.94 16 12 C -0.12 -3.92 8.91 22.50 0.20 -3.71 16 13 C -0.11 -3.65 10.03 22.23 0.22 -3.43 16 14 C -0.13 -5.30 9.69 22.32 0.22 -5.08 16 15 C -0.06 -2.74 5.06 -19.90 -0.10 -2.85 16 16 C 0.02 1.08 4.17 29.10 0.12 1.20 16 17 C -0.52 -31.37 9.65 25.60 0.25 -31.12 16 18 H 0.03 1.81 7.98 -2.91 -0.02 1.78 16 19 C 0.01 0.48 5.47 84.65 0.46 0.95 16 20 N -0.95 -60.89 13.96 21.45 0.30 -60.59 16 21 Si 0.95 45.21 27.47 68.60 1.88 47.10 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 23 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 24 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 25 C -0.12 -5.30 9.16 22.50 0.21 -5.10 16 26 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.09 0.58 8.10 -2.39 -0.02 0.56 16 29 H 0.21 1.67 8.06 -2.91 -0.02 1.65 16 30 H 0.15 3.41 7.87 -2.91 -0.02 3.39 16 31 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 32 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 33 H 0.11 3.81 8.04 -2.91 -0.02 3.79 16 34 H 0.14 3.82 7.90 -2.91 -0.02 3.79 16 35 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 36 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 37 H 0.03 1.64 7.14 -2.39 -0.02 1.62 16 38 H 0.02 1.22 7.51 -2.39 -0.02 1.20 16 39 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 40 H 0.11 4.63 8.04 -2.91 -0.02 4.61 16 Total: -1.00 -76.56 340.79 6.19 -70.38 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.97 Total: 17.84 kcal Atomic # 6 Polarization: -68.97 SS G_CDS: 4.75 Total: -64.22 kcal Atomic # 7 Polarization: -69.68 SS G_CDS: -1.42 Total: -71.10 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.88 Total: 47.10 kcal Total: -76.56 6.19 -70.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241821859.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.024 kcal (2) G-P(sol) polarization free energy of solvation -76.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds