Wall clock time and date at job start Tue Mar 31 2020 06:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37739 * 125.10499 * 2 1 4 4 C 1.39117 * 133.27067 * 359.97438 * 3 2 1 5 5 C 1.37782 * 119.81073 * 179.97438 * 4 3 2 6 6 C 1.38846 * 120.68573 * 359.97438 * 5 4 3 7 7 C 1.36596 * 120.53455 * 0.02562 * 6 5 4 8 8 C 1.39790 * 119.76588 * 359.97438 * 7 6 5 9 9 C 1.46191 * 133.82375 * 180.30066 * 8 7 6 10 10 C 1.35608 * 106.94396 * 180.02562 * 9 8 7 11 11 C 1.47898 * 125.22100 * 179.91828 * 10 9 8 12 12 C 1.39563 * 120.14413 * 157.70284 * 11 10 9 13 13 C 1.37944 * 119.85426 * 179.97438 * 12 11 10 14 14 C 1.38375 * 120.14247 * 359.72152 * 13 12 11 15 15 C 1.38326 * 120.28800 * 0.55185 * 14 13 12 16 16 C 1.50703 * 119.92991 * 179.72337 * 15 14 13 17 17 C 1.50700 * 109.47068 * 269.72900 * 16 15 14 18 18 H 1.07997 * 119.99889 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99879 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99836 * 359.72362 * 19 17 16 21 21 Si 1.86794 * 119.99650 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47088 * 179.72378 * 21 19 17 23 23 H 1.48498 * 109.47497 * 299.72309 * 21 19 17 24 24 H 1.48506 * 109.47157 * 59.72869 * 21 19 17 25 25 C 1.37985 * 120.14054 * 359.45090 * 15 14 13 26 26 H 1.09000 * 109.47537 * 264.16659 * 1 2 3 27 27 H 1.09002 * 109.47434 * 24.17349 * 1 2 3 28 28 H 1.09002 * 109.47131 * 144.16853 * 1 2 3 29 29 H 1.07995 * 120.09741 * 0.02562 * 4 3 2 30 30 H 1.08000 * 119.65738 * 180.02562 * 5 4 3 31 31 H 1.08002 * 119.72975 * 180.02562 * 6 5 4 32 32 H 1.07998 * 120.11025 * 179.97438 * 7 6 5 33 33 H 1.08003 * 126.53167 * 359.95792 * 9 8 7 34 34 H 1.08000 * 120.07092 * 359.95548 * 12 11 10 35 35 H 1.08000 * 119.92640 * 180.02562 * 13 12 11 36 36 H 1.08001 * 119.85676 * 180.27582 * 14 13 12 37 37 H 1.09001 * 109.46768 * 149.72662 * 16 15 14 38 38 H 1.09001 * 109.46803 * 29.72928 * 16 15 14 39 39 H 0.96997 * 120.00252 * 0.27776 * 20 19 17 40 40 H 1.08000 * 120.07461 * 180.25117 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2570 1.1268 0.0000 4 6 1.9767 2.4895 -0.0005 5 6 3.0097 3.4013 0.0002 6 6 4.3311 2.9750 0.0019 7 6 4.6304 1.6422 0.0024 8 6 3.5984 0.6992 0.0017 9 6 3.5626 -0.7622 0.0075 10 6 2.2561 -1.1256 0.0027 11 6 1.7581 -2.5182 0.0042 12 6 0.4686 -2.8008 0.4572 13 6 0.0100 -4.1018 0.4556 14 6 0.8233 -5.1247 0.0007 15 6 2.1043 -4.8520 -0.4444 16 6 2.9855 -5.9730 -0.9322 17 6 3.7811 -6.5254 0.2223 18 1 3.6610 -6.1063 1.2104 19 6 4.6630 -7.5652 0.0169 20 7 4.8059 -8.0784 -1.1855 21 14 5.6497 -8.2493 1.4479 22 1 6.5134 -9.3581 0.9684 23 1 6.4977 -7.1747 2.0232 24 1 4.7223 -8.7593 2.4896 25 6 2.5752 -3.5549 -0.4478 26 1 -0.3634 -0.1044 1.0223 27 1 -0.3634 0.9375 -0.4208 28 1 -0.3633 -0.8332 -0.6016 29 1 0.9524 2.8317 -0.0005 30 1 2.7893 4.4585 0.0003 31 1 5.1288 3.7031 0.0028 32 1 5.6606 1.3183 0.0032 33 1 4.4145 -1.4262 0.0132 34 1 -0.1686 -2.0028 0.8086 35 1 -0.9878 -4.3218 0.8055 36 1 0.4580 -6.1410 -0.0028 37 1 3.6663 -5.5945 -1.6946 38 1 2.3663 -6.7628 -1.3578 39 1 4.2938 -7.7229 -1.9286 40 1 3.5741 -3.3427 -0.7993 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243353785.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:12 Heat of formation + Delta-G solvation = 72.717393 kcal Electronic energy + Delta-G solvation = -21511.129143 eV Core-core repulsion = 18448.435365 eV Total energy + Delta-G solvation = -3062.693778 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.132 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.35235 -38.78901 -37.00230 -33.87106 -33.10973 -31.65320 -30.96345 -30.28747 -28.03411 -26.77545 -26.17082 -23.42174 -23.25618 -21.78115 -21.46263 -20.39566 -19.54826 -17.10968 -16.86381 -16.25250 -16.03968 -15.46720 -15.40591 -14.56014 -14.28125 -13.98990 -13.75265 -13.61806 -13.33272 -13.05643 -13.00703 -12.84899 -12.50680 -12.34337 -11.85675 -11.67989 -11.44394 -11.23805 -11.11306 -10.87485 -10.77569 -10.49454 -10.17939 -9.91207 -9.70950 -9.06302 -8.80644 -8.41022 -8.02774 -7.88179 -7.35705 -6.41941 -4.13705 0.88092 1.58339 1.74389 1.89423 2.72961 2.97735 3.42816 3.44137 3.62974 3.91108 4.29485 4.53491 4.58417 4.61089 4.68501 4.96650 5.02068 5.06187 5.18802 5.27632 5.34068 5.35680 5.44333 5.46552 5.56265 5.67246 5.82614 5.87658 5.96812 6.06550 6.10190 6.30048 6.43517 6.50105 6.58987 6.66707 6.79926 6.85789 6.92260 6.99822 7.11317 7.25285 7.29899 7.46100 7.54957 8.06623 8.38942 8.79402 9.57279 10.97144 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.018888 B = 0.003697 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.074553 B = 7571.339634 C = 8667.554528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.483 5.483 3 C 0.098 3.902 4 C -0.131 4.131 5 C -0.105 4.105 6 C -0.152 4.152 7 C -0.069 4.069 8 C -0.104 4.104 9 C -0.190 4.190 10 C 0.136 3.864 11 C -0.042 4.042 12 C -0.149 4.149 13 C -0.119 4.119 14 C -0.115 4.115 15 C -0.025 4.025 16 C 0.035 3.965 17 C -0.594 4.594 18 H 0.051 0.949 19 C 0.018 3.982 20 N -0.910 5.910 21 Si 1.070 2.930 22 H -0.282 1.282 23 H -0.286 1.286 24 H -0.287 1.287 25 C -0.094 4.094 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.152 0.848 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.021 0.979 38 H 0.021 0.979 39 H 0.269 0.731 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.241 19.645 2.133 21.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.166 5.166 3 C -0.008 4.008 4 C -0.151 4.151 5 C -0.124 4.124 6 C -0.172 4.172 7 C -0.087 4.087 8 C -0.109 4.109 9 C -0.214 4.214 10 C 0.030 3.970 11 C -0.043 4.043 12 C -0.167 4.167 13 C -0.137 4.137 14 C -0.133 4.133 15 C -0.025 4.025 16 C -0.002 4.002 17 C -0.632 4.632 18 H 0.070 0.930 19 C -0.186 4.186 20 N -0.546 5.546 21 Si 0.897 3.103 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.214 1.214 25 C -0.113 4.113 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.107 0.893 29 H 0.133 0.867 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.169 0.831 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.079 0.921 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.475 18.469 2.536 20.085 hybrid contribution -1.324 1.185 -0.296 1.801 sum -8.799 19.654 2.240 21.650 Atomic orbital electron populations 1.22140 0.77680 1.04146 1.02849 1.43806 1.05552 1.03742 1.63503 1.18253 0.90193 0.88008 1.04334 1.19963 0.99320 0.89124 1.06729 1.20743 0.92302 0.98572 1.00780 1.20576 0.96341 0.95444 1.04791 1.20333 0.98002 0.92004 0.98409 1.19178 0.92130 0.93418 1.06134 1.21799 0.95201 0.92561 1.11875 1.18847 0.89592 0.85584 1.02965 1.18049 0.94771 0.88965 1.02491 1.21200 0.95296 0.97013 1.03184 1.20944 0.99542 0.92645 1.00582 1.21211 0.94123 0.98964 0.99032 1.20398 0.93754 0.94870 0.93469 1.18496 0.93568 0.90945 0.97179 1.21882 1.25945 1.20509 0.94867 0.93040 1.25882 0.96710 0.94335 1.01692 1.70791 1.41274 1.42120 1.00373 0.83528 0.76146 0.76388 0.74202 1.20686 1.21288 1.21370 1.21052 0.99133 0.91414 0.99692 0.91209 0.90260 0.89305 0.86679 0.86076 0.86249 0.85997 0.83086 0.86489 0.86544 0.86182 0.96080 0.96099 0.92050 0.85757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.73 9.18 59.84 0.55 1.28 16 2 N -0.48 -6.75 3.20 -117.61 -0.38 -7.12 16 3 C 0.10 1.39 6.80 -83.92 -0.57 0.82 16 4 C -0.13 -1.51 9.87 -39.42 -0.39 -1.90 16 5 C -0.10 -1.09 10.01 -39.52 -0.40 -1.49 16 6 C -0.15 -1.66 9.97 -39.95 -0.40 -2.06 16 7 C -0.07 -0.88 10.06 -39.59 -0.40 -1.28 16 8 C -0.10 -1.56 6.36 -105.16 -0.67 -2.23 16 9 C -0.19 -3.08 10.39 -37.33 -0.39 -3.47 16 10 C 0.14 2.20 6.63 -82.27 -0.55 1.65 16 11 C -0.04 -0.72 5.80 -104.97 -0.61 -1.33 16 12 C -0.15 -2.27 8.44 -39.20 -0.33 -2.60 16 13 C -0.12 -1.87 10.03 -39.64 -0.40 -2.26 16 14 C -0.12 -2.16 9.69 -39.50 -0.38 -2.55 16 15 C -0.02 -0.53 5.06 -104.68 -0.53 -1.06 16 16 C 0.03 0.88 4.41 -29.03 -0.13 0.75 16 17 C -0.59 -16.61 9.09 -34.44 -0.31 -16.93 16 18 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 19 C 0.02 0.51 5.46 -17.82 -0.10 0.41 16 20 N -0.91 -27.31 13.65 55.43 0.76 -26.56 16 21 Si 1.07 25.08 29.90 -169.99 -5.08 19.99 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 25 C -0.09 -1.85 9.19 -39.19 -0.36 -2.21 16 26 H 0.07 0.61 7.50 -51.93 -0.39 0.22 16 27 H 0.08 0.62 7.79 -51.93 -0.40 0.21 16 28 H 0.09 0.87 6.47 -51.93 -0.34 0.54 16 29 H 0.12 1.05 7.86 -52.49 -0.41 0.64 16 30 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 31 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.15 2.35 7.65 -52.48 -0.40 1.95 16 34 H 0.12 1.44 4.89 -52.49 -0.26 1.19 16 35 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 37 H 0.02 0.55 7.95 -51.93 -0.41 0.13 16 38 H 0.02 0.54 7.95 -51.93 -0.41 0.13 16 39 H 0.27 8.00 7.22 -40.82 -0.29 7.70 16 40 H 0.12 2.42 7.35 -52.49 -0.39 2.03 16 LS Contribution 335.18 15.07 5.05 5.05 Total: -1.00 -31.75 335.18 -11.03 -42.77 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -5.02 Total: 2.31 kcal Atomic # 6 Polarization: -30.10 SS G_CDS: -6.35 Total: -36.45 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.38 Total: -33.68 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.08 Total: 19.99 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.75 -11.03 -42.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243353785.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.490 kcal (2) G-P(sol) polarization free energy of solvation -31.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds