Wall clock time and date at job start Tue Mar 31 2020 07:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30270 * 126.28232 * 2 1 4 4 N 1.28676 * 109.37727 * 179.82840 * 3 2 1 5 5 C 1.30276 * 109.37767 * 0.44195 * 4 3 2 6 6 C 1.50706 * 126.27767 * 179.73447 * 5 4 3 7 7 H 1.09001 * 109.46888 * 195.00176 * 6 5 4 8 8 C 1.52998 * 109.47029 * 75.00049 * 6 5 4 9 9 N 1.46503 * 109.46724 * 314.99950 * 6 5 4 10 10 C 1.39991 * 119.99806 * 205.00100 * 9 6 5 11 11 C 1.40432 * 125.97333 * 0.02562 * 10 9 6 12 12 C 1.35250 * 107.86251 * 179.97438 * 11 10 9 13 13 C 1.50698 * 126.06957 * 179.97438 * 12 11 10 14 14 N 1.34965 * 107.86235 * 359.97438 * 12 11 10 15 15 C 1.46497 * 125.97415 * 180.02562 * 14 12 11 16 16 C 1.50704 * 109.47313 * 89.99402 * 15 14 12 17 17 H 1.08002 * 119.99362 * 0.02562 * 16 15 14 18 18 C 1.37871 * 119.99903 * 180.02562 * 16 15 14 19 19 N 1.31507 * 120.00510 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99728 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47107 * 89.99549 * 20 18 16 22 22 H 1.48502 * 109.47148 * 209.99862 * 20 18 16 23 23 H 1.48505 * 109.47160 * 329.99911 * 20 18 16 24 24 N 1.31219 * 125.97787 * 179.68706 * 10 9 6 25 25 O 1.34360 * 126.27707 * 180.31158 * 2 1 3 26 26 H 1.08999 * 109.47015 * 269.69232 * 1 2 3 27 27 H 1.09000 * 109.46646 * 29.68384 * 1 2 3 28 28 H 1.09000 * 109.47248 * 149.69102 * 1 2 3 29 29 H 1.08999 * 109.46927 * 299.99595 * 8 6 5 30 30 H 1.08997 * 109.47322 * 60.00342 * 8 6 5 31 31 H 1.09006 * 109.46716 * 180.02562 * 8 6 5 32 32 H 0.96992 * 120.00524 * 25.00281 * 9 6 5 33 33 H 1.07997 * 126.06980 * 359.94476 * 11 10 9 34 34 H 1.08993 * 109.47129 * 90.02643 * 13 12 11 35 35 H 1.09000 * 109.46828 * 210.02479 * 13 12 11 36 36 H 1.09006 * 109.46858 * 330.02195 * 13 12 11 37 37 H 1.08995 * 109.47301 * 209.99853 * 15 14 12 38 38 H 1.09000 * 109.46945 * 330.00122 * 15 14 12 39 39 H 0.96995 * 120.00251 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2780 1.0501 0.0000 4 7 3.5091 0.6760 0.0036 5 6 3.5653 -0.6256 -0.0034 6 6 4.8176 -1.4640 -0.0079 7 1 4.5672 -2.4895 -0.2795 8 6 5.4491 -1.4451 1.3856 9 7 5.7668 -0.9188 -0.9817 10 6 6.7354 -1.7503 -1.5561 11 6 6.9097 -3.1185 -1.2920 12 6 7.9455 -3.5573 -2.0429 13 6 8.4835 -4.9646 -2.0765 14 7 8.4117 -2.5111 -2.7568 15 6 9.5306 -2.5445 -3.7019 16 6 9.0153 -2.8741 -5.0792 17 1 7.9597 -3.0416 -5.2349 18 6 9.8913 -2.9619 -6.1402 19 7 11.1764 -2.7575 -5.9506 20 14 9.2523 -3.3698 -7.8475 21 1 8.9053 -2.1136 -8.5594 22 1 10.3008 -4.0964 -8.6079 23 1 8.0428 -4.2238 -7.7325 24 7 7.6353 -1.3891 -2.4402 25 8 2.3021 -1.0831 -0.0059 26 1 -0.3633 -0.0055 1.0276 27 1 -0.3632 0.8928 -0.5089 28 1 -0.3634 -0.8872 -0.5186 29 1 5.6994 -0.4195 1.6570 30 1 4.7429 -1.8507 2.1100 31 1 6.3551 -2.0511 1.3821 32 1 5.7241 0.0183 -1.2283 33 1 6.3214 -3.7145 -0.6100 34 1 7.9636 -5.5340 -2.8468 35 1 9.5500 -4.9405 -2.3000 36 1 8.3260 -5.4370 -1.1068 37 1 10.0197 -1.5706 -3.7204 38 1 10.2467 -3.3049 -3.3904 39 1 11.7927 -2.8197 -6.6970 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319784688.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:31 Heat of formation + Delta-G solvation = 114.739066 kcal Electronic energy + Delta-G solvation = -22396.137173 eV Core-core repulsion = 18956.709080 eV Total energy + Delta-G solvation = -3439.428094 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.44874 -40.38700 -36.94709 -36.36609 -33.76952 -32.97150 -31.94966 -30.92919 -29.69388 -28.25718 -26.57194 -26.18664 -24.76958 -23.05987 -22.68367 -21.83984 -19.65913 -19.25091 -17.66976 -17.33312 -16.67708 -16.18604 -15.96131 -15.16430 -14.71805 -14.40466 -14.30797 -14.14859 -13.86181 -13.46383 -13.23789 -12.99239 -12.59983 -12.50515 -12.38098 -12.30572 -12.12083 -12.04033 -11.81508 -11.54707 -11.38918 -11.08315 -11.04303 -10.79466 -10.29970 -10.11935 -9.74140 -9.64254 -9.29417 -8.62383 -7.83491 -7.15545 -6.22969 -4.30764 0.88125 1.87210 2.15968 2.83604 3.15741 3.22730 3.28993 3.33705 3.48846 3.67465 4.03538 4.18256 4.32966 4.59655 4.82336 4.85333 4.92057 5.03977 5.10354 5.20540 5.23525 5.34323 5.47440 5.51331 5.63241 5.74175 5.94432 6.05008 6.05296 6.16554 6.29220 6.60881 6.81683 7.03835 7.15806 7.56398 7.69113 7.92089 8.04010 8.09101 8.13129 8.73915 8.84783 9.35451 10.83853 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.021353 B = 0.003237 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.990380 B = 8647.914524 C = 9290.118214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.158 3.842 3 N -0.288 5.288 4 N -0.274 5.274 5 C 0.163 3.837 6 C 0.273 3.727 7 H 0.107 0.893 8 C -0.163 4.163 9 N -0.717 5.717 10 C 0.313 3.687 11 C -0.338 4.338 12 C 0.110 3.890 13 C -0.086 4.086 14 N -0.323 5.323 15 C 0.259 3.741 16 C -0.534 4.534 17 H 0.063 0.937 18 C 0.065 3.935 19 N -0.892 5.892 20 Si 0.905 3.095 21 H -0.278 1.278 22 H -0.283 1.283 23 H -0.272 1.272 24 N -0.340 5.340 25 O -0.221 6.221 26 H 0.099 0.901 27 H 0.107 0.893 28 H 0.093 0.907 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.408 0.592 33 H 0.131 0.869 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.053 0.947 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.928 -1.661 14.566 22.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.053 4.053 3 N -0.135 5.135 4 N -0.121 5.121 5 C -0.049 4.049 6 C 0.163 3.837 7 H 0.125 0.875 8 C -0.222 4.222 9 N -0.361 5.361 10 C 0.058 3.942 11 C -0.371 4.371 12 C -0.024 4.024 13 C -0.145 4.145 14 N -0.103 5.103 15 C 0.142 3.858 16 C -0.573 4.573 17 H 0.082 0.918 18 C -0.138 4.138 19 N -0.530 5.530 20 Si 0.732 3.268 21 H -0.203 1.203 22 H -0.209 1.209 23 H -0.197 1.197 24 N -0.170 5.170 25 O -0.100 6.100 26 H 0.117 0.883 27 H 0.125 0.875 28 H 0.112 0.888 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.244 0.756 33 H 0.149 0.851 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.821 0.395 13.739 20.958 hybrid contribution -1.041 -1.581 -0.698 2.018 sum -16.863 -1.186 13.041 21.350 Atomic orbital electron populations 1.20359 0.80111 1.05822 1.05202 1.28077 0.97895 0.79673 0.99613 1.74423 0.96027 1.25587 1.17482 1.74353 1.12144 1.09097 1.16489 1.28203 0.85318 0.91855 0.99556 1.18779 0.79157 0.94522 0.91216 0.87496 1.22339 1.01971 1.04145 0.93775 1.43129 1.33638 1.11107 1.48266 1.18880 0.91343 0.89712 0.94273 1.20438 1.07894 0.94013 1.14777 1.20861 0.95527 0.91929 0.94044 1.20354 1.01851 0.89929 1.02331 1.48958 1.25756 1.03699 1.31862 1.19632 0.80879 0.99660 0.85669 1.21329 0.94737 1.49284 0.91938 0.91831 1.24921 0.94678 0.94761 0.99447 1.69914 1.02048 1.48665 1.32413 0.86372 0.78582 0.78664 0.83147 1.20350 1.20896 1.19714 1.77411 1.09589 1.09687 1.20355 1.84777 1.17279 1.38362 1.69572 0.88301 0.87486 0.88809 0.91143 0.91637 0.89567 0.75613 0.85081 0.90437 0.90809 0.90961 0.93074 0.92977 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.28 10.51 36.01 0.38 0.10 16 2 C 0.16 1.68 8.48 -12.94 -0.11 1.57 16 3 N -0.29 -3.97 12.22 32.55 0.40 -3.58 16 4 N -0.27 -4.07 11.93 32.55 0.39 -3.68 16 5 C 0.16 2.13 7.27 -12.94 -0.09 2.03 16 6 C 0.27 3.35 3.11 -69.08 -0.22 3.13 16 7 H 0.11 1.20 7.14 -51.93 -0.37 0.83 16 8 C -0.16 -1.67 9.48 37.16 0.35 -1.31 16 9 N -0.72 -11.38 5.28 -54.69 -0.29 -11.67 16 10 C 0.31 6.06 8.14 -154.55 -1.26 4.80 16 11 C -0.34 -6.01 9.83 -39.82 -0.39 -6.40 16 12 C 0.11 2.16 6.92 -82.28 -0.57 1.59 16 13 C -0.09 -1.36 10.11 36.00 0.36 -0.99 16 14 N -0.32 -7.56 3.59 -58.33 -0.21 -7.77 16 15 C 0.26 6.67 5.99 -5.19 -0.03 6.64 16 16 C -0.53 -14.81 9.39 -34.44 -0.32 -15.13 16 17 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 18 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 19 N -0.89 -25.25 13.29 55.43 0.74 -24.51 16 20 Si 0.91 21.25 29.54 -169.99 -5.02 16.23 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 N -0.34 -7.94 12.59 31.41 0.40 -7.54 16 25 O -0.22 -2.61 10.87 5.40 0.06 -2.55 16 26 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.41 6.72 8.48 -40.82 -0.35 6.38 16 33 H 0.13 1.86 7.45 -52.49 -0.39 1.47 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.07 1.20 7.07 -51.93 -0.37 0.84 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.05 1.31 7.04 -51.93 -0.37 0.95 16 39 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 341.91 15.07 5.15 5.15 Total: -1.00 -33.16 341.91 -5.58 -38.74 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -5.19 Total: 3.46 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -2.00 Total: -2.28 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: 1.42 Total: -58.74 kcal Atomic # 8 Polarization: -2.61 SS G_CDS: 0.06 Total: -2.55 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.16 -5.58 -38.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319784688.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.476 kcal (2) G-P(sol) polarization free energy of solvation -33.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds