Wall clock time and date at job start Tue Mar 31 2020 07:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30270 * 126.28232 * 2 1 4 4 N 1.28676 * 109.37727 * 179.82840 * 3 2 1 5 5 C 1.30276 * 109.37767 * 0.44195 * 4 3 2 6 6 C 1.50706 * 126.27767 * 179.73447 * 5 4 3 7 7 H 1.09001 * 109.46888 * 195.00176 * 6 5 4 8 8 C 1.52998 * 109.47029 * 75.00049 * 6 5 4 9 9 N 1.46503 * 109.46724 * 314.99950 * 6 5 4 10 10 C 1.39991 * 119.99806 * 205.00100 * 9 6 5 11 11 C 1.40432 * 125.97333 * 0.02562 * 10 9 6 12 12 C 1.35250 * 107.86251 * 179.97438 * 11 10 9 13 13 C 1.50698 * 126.06957 * 179.97438 * 12 11 10 14 14 N 1.34965 * 107.86235 * 359.97438 * 12 11 10 15 15 C 1.46497 * 125.97415 * 180.02562 * 14 12 11 16 16 C 1.50704 * 109.47313 * 89.99402 * 15 14 12 17 17 H 1.08002 * 119.99362 * 0.02562 * 16 15 14 18 18 C 1.37871 * 119.99903 * 180.02562 * 16 15 14 19 19 N 1.31507 * 120.00510 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99728 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47107 * 89.99549 * 20 18 16 22 22 H 1.48502 * 109.47148 * 209.99862 * 20 18 16 23 23 H 1.48505 * 109.47160 * 329.99911 * 20 18 16 24 24 N 1.31219 * 125.97787 * 179.68706 * 10 9 6 25 25 O 1.34360 * 126.27707 * 180.31158 * 2 1 3 26 26 H 1.08999 * 109.47015 * 269.69232 * 1 2 3 27 27 H 1.09000 * 109.46646 * 29.68384 * 1 2 3 28 28 H 1.09000 * 109.47248 * 149.69102 * 1 2 3 29 29 H 1.08999 * 109.46927 * 299.99595 * 8 6 5 30 30 H 1.08997 * 109.47322 * 60.00342 * 8 6 5 31 31 H 1.09006 * 109.46716 * 180.02562 * 8 6 5 32 32 H 0.96992 * 120.00524 * 25.00281 * 9 6 5 33 33 H 1.07997 * 126.06980 * 359.94476 * 11 10 9 34 34 H 1.08993 * 109.47129 * 90.02643 * 13 12 11 35 35 H 1.09000 * 109.46828 * 210.02479 * 13 12 11 36 36 H 1.09006 * 109.46858 * 330.02195 * 13 12 11 37 37 H 1.08995 * 109.47301 * 209.99853 * 15 14 12 38 38 H 1.09000 * 109.46945 * 330.00122 * 15 14 12 39 39 H 0.96995 * 120.00251 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2780 1.0501 0.0000 4 7 3.5091 0.6760 0.0036 5 6 3.5653 -0.6256 -0.0034 6 6 4.8176 -1.4640 -0.0079 7 1 4.5672 -2.4895 -0.2795 8 6 5.4491 -1.4451 1.3856 9 7 5.7668 -0.9188 -0.9817 10 6 6.7354 -1.7503 -1.5561 11 6 6.9097 -3.1185 -1.2920 12 6 7.9455 -3.5573 -2.0429 13 6 8.4835 -4.9646 -2.0765 14 7 8.4117 -2.5111 -2.7568 15 6 9.5306 -2.5445 -3.7019 16 6 9.0153 -2.8741 -5.0792 17 1 7.9597 -3.0416 -5.2349 18 6 9.8913 -2.9619 -6.1402 19 7 11.1764 -2.7575 -5.9506 20 14 9.2523 -3.3698 -7.8475 21 1 8.9053 -2.1136 -8.5594 22 1 10.3008 -4.0964 -8.6079 23 1 8.0428 -4.2238 -7.7325 24 7 7.6353 -1.3891 -2.4402 25 8 2.3021 -1.0831 -0.0059 26 1 -0.3633 -0.0055 1.0276 27 1 -0.3632 0.8928 -0.5089 28 1 -0.3634 -0.8872 -0.5186 29 1 5.6994 -0.4195 1.6570 30 1 4.7429 -1.8507 2.1100 31 1 6.3551 -2.0511 1.3821 32 1 5.7241 0.0183 -1.2283 33 1 6.3214 -3.7145 -0.6100 34 1 7.9636 -5.5340 -2.8468 35 1 9.5500 -4.9405 -2.3000 36 1 8.3260 -5.4370 -1.1068 37 1 10.0197 -1.5706 -3.7204 38 1 10.2467 -3.3049 -3.3904 39 1 11.7927 -2.8197 -6.6970 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319784688.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:31 Heat of formation + Delta-G solvation = 88.778006 kcal Electronic energy + Delta-G solvation = -22397.262929 eV Core-core repulsion = 18956.709080 eV Total energy + Delta-G solvation = -3440.553850 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.37184 -41.93332 -38.10763 -37.31276 -35.61195 -34.19393 -33.13187 -32.52466 -30.98377 -29.01889 -28.32324 -27.65626 -25.78323 -24.81871 -23.63281 -22.89793 -21.09554 -20.73559 -18.78880 -18.60114 -18.31750 -17.62390 -17.08758 -16.69114 -16.02031 -15.87874 -15.62275 -15.31576 -14.84163 -14.55039 -14.25557 -13.95202 -13.70648 -13.67318 -13.56515 -13.51879 -13.40036 -13.15403 -13.06177 -12.94909 -12.75038 -12.71041 -12.62993 -12.20661 -12.02332 -11.90571 -11.20202 -10.99212 -10.73335 -10.62752 -9.38159 -8.70554 -8.27783 -6.49227 -0.00967 0.95782 1.22027 1.27826 1.36927 1.38982 1.49433 1.76502 2.19349 2.33403 2.63180 2.74018 2.97692 3.39185 3.70782 3.92133 3.94308 4.11377 4.27032 4.32920 4.39232 4.51323 4.57061 4.66624 4.70678 4.77909 4.79877 4.86903 4.95449 5.01121 5.04371 5.12919 5.23610 5.31860 5.54044 5.58782 5.84567 6.21235 6.37214 6.61485 6.68126 7.14992 7.21858 7.29371 8.74226 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.021353 B = 0.003237 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.990380 B = 8647.914524 C = 9290.118214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.175 3.825 3 N -0.330 5.330 4 N -0.305 5.305 5 C 0.159 3.841 6 C 0.272 3.728 7 H 0.126 0.874 8 C -0.155 4.155 9 N -0.714 5.714 10 C 0.321 3.679 11 C -0.325 4.325 12 C 0.099 3.901 13 C -0.084 4.084 14 N -0.354 5.354 15 C 0.278 3.722 16 C -0.551 4.551 17 H 0.048 0.952 18 C 0.021 3.979 19 N -0.920 5.920 20 Si 0.971 3.029 21 H -0.278 1.278 22 H -0.269 1.269 23 H -0.267 1.267 24 N -0.401 5.401 25 O -0.222 6.222 26 H 0.125 0.875 27 H 0.118 0.882 28 H 0.115 0.885 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.401 0.599 33 H 0.175 0.825 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.115 0.885 37 H 0.015 0.985 38 H 0.051 0.949 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.422 -3.592 15.489 25.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.036 4.036 3 N -0.177 5.177 4 N -0.151 5.151 5 C -0.055 4.055 6 C 0.164 3.836 7 H 0.143 0.857 8 C -0.214 4.214 9 N -0.358 5.358 10 C 0.064 3.936 11 C -0.357 4.357 12 C -0.032 4.032 13 C -0.142 4.142 14 N -0.135 5.135 15 C 0.158 3.842 16 C -0.589 4.589 17 H 0.067 0.933 18 C -0.180 4.180 19 N -0.558 5.558 20 Si 0.794 3.206 21 H -0.204 1.204 22 H -0.194 1.194 23 H -0.191 1.191 24 N -0.232 5.232 25 O -0.101 6.101 26 H 0.143 0.857 27 H 0.136 0.864 28 H 0.133 0.867 29 H 0.076 0.924 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.236 0.764 33 H 0.193 0.807 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.133 0.867 37 H 0.033 0.967 38 H 0.069 0.931 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.349 -1.538 14.708 23.567 hybrid contribution -0.426 -0.930 -0.872 1.344 sum -18.775 -2.468 13.837 23.453 Atomic orbital electron populations 1.20773 0.76100 1.07361 1.07284 1.29214 0.99541 0.78619 0.96236 1.74368 0.96105 1.27135 1.20067 1.74278 1.13196 1.10210 1.17417 1.28198 0.85992 0.91489 0.99799 1.19070 0.78332 0.94865 0.91298 0.85685 1.22285 1.02528 1.03658 0.92946 1.43363 1.33423 1.10583 1.48400 1.19200 0.90612 0.90888 0.92866 1.20864 1.07169 0.93316 1.14326 1.21682 0.95736 0.92700 0.93123 1.20493 1.00818 0.87938 1.04910 1.48662 1.26424 1.05068 1.33340 1.19102 0.81799 0.97347 0.85939 1.21468 0.94081 1.49916 0.93421 0.93321 1.25749 0.94814 0.94271 1.03185 1.70002 1.03080 1.48985 1.33776 0.85368 0.78425 0.78431 0.78326 1.20394 1.19382 1.19145 1.77293 1.11749 1.11000 1.23204 1.84795 1.16869 1.38650 1.69759 0.85699 0.86410 0.86671 0.92389 0.88888 0.89397 0.76381 0.80733 0.90027 0.92072 0.86685 0.96707 0.93138 0.91799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.38 10.51 71.24 0.75 0.36 16 2 C 0.17 3.39 8.48 88.34 0.75 4.14 16 3 N -0.33 -8.95 12.22 -165.50 -2.02 -10.97 16 4 N -0.30 -9.02 11.93 -165.50 -1.97 -10.99 16 5 C 0.16 3.95 7.27 88.34 0.64 4.59 16 6 C 0.27 6.17 3.11 44.25 0.14 6.31 16 7 H 0.13 2.39 7.14 -2.39 -0.02 2.37 16 8 C -0.16 -2.82 9.48 71.98 0.68 -2.14 16 9 N -0.71 -22.38 5.28 -326.95 -1.73 -24.10 16 10 C 0.32 12.32 8.14 133.39 1.09 13.40 16 11 C -0.32 -10.84 9.83 22.11 0.22 -10.63 16 12 C 0.10 3.80 6.92 41.39 0.29 4.08 16 13 C -0.08 -2.48 10.11 71.24 0.72 -1.76 16 14 N -0.35 -17.07 3.59 -338.45 -1.22 -18.29 16 15 C 0.28 14.98 5.99 85.64 0.51 15.50 16 16 C -0.55 -31.45 9.39 25.60 0.24 -31.21 16 17 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 18 C 0.02 1.14 5.46 84.65 0.46 1.60 16 19 N -0.92 -52.99 13.29 21.44 0.28 -52.71 16 20 Si 0.97 43.74 29.54 68.60 2.03 45.76 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 N -0.40 -19.36 12.59 -54.54 -0.69 -20.05 16 25 O -0.22 -4.77 10.87 -3.59 -0.04 -4.81 16 26 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 27 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.40 13.56 8.48 -92.71 -0.79 12.78 16 33 H 0.18 4.16 7.45 -2.91 -0.02 4.14 16 34 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.06 1.97 7.07 -2.39 -0.02 1.95 16 36 H 0.11 2.38 8.14 -2.38 -0.02 2.37 16 37 H 0.01 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.05 2.68 7.04 -2.39 -0.02 2.66 16 39 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -75.60 341.91 1.43 -74.17 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.29 Total: 17.75 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: 6.49 Total: 4.25 kcal Atomic # 7 Polarization: -129.77 SS G_CDS: -7.34 Total: -137.11 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.04 Total: -4.81 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -75.60 1.43 -74.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319784688.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.948 kcal (2) G-P(sol) polarization free energy of solvation -75.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds