Wall clock time and date at job start Tue Mar 31 2020 06:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46900 * 111.00494 * 2 1 4 4 C 1.46903 * 111.00165 * 123.95730 * 2 1 3 5 5 C 1.50696 * 109.47445 * 164.34259 * 4 2 1 6 6 C 1.38205 * 119.89250 * 105.13546 * 5 4 2 7 7 C 1.38034 * 120.23316 * 179.72393 * 6 5 4 8 8 C 1.39653 * 120.02154 * 0.54820 * 7 6 5 9 9 C 1.47864 * 120.10560 * 179.70673 * 8 7 6 10 10 N 1.34774 * 119.99778 * 0.02562 * 9 8 7 11 11 O 1.21553 * 119.99916 * 180.02562 * 9 8 7 12 12 C 1.39417 * 119.79091 * 359.72667 * 8 7 6 13 13 C 1.38794 * 119.76614 * 359.97438 * 12 8 7 14 14 N 1.39567 * 120.01320 * 179.97438 * 13 12 8 15 15 C 1.34778 * 120.00206 * 326.07671 * 14 13 12 16 16 O 1.21740 * 119.99973 * 4.62511 * 15 14 13 17 17 C 1.46182 * 119.99710 * 184.63305 * 15 14 13 18 18 H 1.07996 * 120.00100 * 359.97438 * 17 15 14 19 19 C 1.40121 * 119.99271 * 179.97438 * 17 15 14 20 20 N 1.30632 * 120.00404 * 359.97438 * 19 17 15 21 21 Si 1.86805 * 119.99720 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46860 * 59.99639 * 21 19 17 23 23 H 1.48493 * 109.47317 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47041 * 300.00224 * 21 19 17 25 25 H 1.09004 * 109.47310 * 296.05029 * 1 2 3 26 26 H 1.09003 * 109.46907 * 56.04415 * 1 2 3 27 27 H 1.08998 * 109.47516 * 176.04628 * 1 2 3 28 28 H 1.08993 * 109.47350 * 188.99012 * 3 2 1 29 29 H 1.08999 * 109.46968 * 308.98734 * 3 2 1 30 30 H 1.08992 * 109.46841 * 68.98536 * 3 2 1 31 31 H 1.09003 * 109.46567 * 284.34731 * 4 2 1 32 32 H 1.09003 * 109.46927 * 44.34136 * 4 2 1 33 33 H 1.07993 * 119.88034 * 359.97438 * 6 5 4 34 34 H 1.07999 * 119.98572 * 180.27279 * 7 6 5 35 35 H 0.96995 * 120.00162 * 359.97438 * 10 9 8 36 36 H 0.97003 * 119.99551 * 180.02562 * 10 9 8 37 37 H 1.07999 * 120.11660 * 180.02562 * 12 8 7 38 38 H 0.97008 * 119.99803 * 146.07460 * 14 13 12 39 39 H 0.97006 * 120.00233 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 3.4526 -1.0722 0.9057 6 6 4.4221 -0.3765 1.6030 7 6 5.7587 -0.6551 1.4004 8 6 6.1364 -1.6350 0.4798 9 6 7.5679 -1.9305 0.2565 10 7 8.5105 -1.2540 0.9423 11 8 7.8945 -2.7835 -0.5455 12 6 5.1595 -2.3335 -0.2283 13 6 3.8178 -2.0506 -0.0131 14 7 2.8356 -2.7463 -0.7196 15 6 3.0683 -3.1390 -1.9877 16 8 4.1636 -2.9618 -2.4885 17 6 2.0052 -3.7775 -2.7617 18 1 1.0336 -3.9349 -2.3173 19 6 2.2470 -4.1852 -4.0803 20 7 3.4221 -3.9944 -4.6180 21 14 0.8888 -5.0018 -5.0693 22 1 -0.2646 -4.0738 -5.1864 23 1 1.3953 -5.3348 -6.4249 24 1 0.4558 -6.2454 -4.3829 25 1 -0.3634 0.4513 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3634 -1.0252 -0.0709 28 1 3.0733 1.3468 -0.1606 29 1 1.5222 1.9423 -0.7988 30 1 1.7817 1.8426 0.9593 31 1 1.8879 -0.1806 2.0507 32 1 1.4395 -1.6984 1.2361 33 1 4.1326 0.3851 2.3119 34 1 6.5128 -0.1120 1.9507 35 1 8.2499 -0.5731 1.5821 36 1 9.4496 -1.4476 0.7956 37 1 5.4457 -3.0927 -0.9412 38 1 1.9854 -2.9472 -0.2978 39 1 3.5894 -4.2763 -5.5310 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320510063.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:39 Heat of formation + Delta-G solvation = -39.764637 kcal Electronic energy + Delta-G solvation = -23424.202469 eV Core-core repulsion = 19945.781841 eV Total energy + Delta-G solvation = -3478.420628 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.95439 -38.67493 -37.21059 -36.34425 -33.77781 -33.11386 -32.37809 -31.20223 -29.11895 -27.41203 -26.96301 -26.01224 -23.19891 -22.42249 -21.29872 -20.26209 -19.40427 -17.96078 -17.26434 -16.49486 -15.61358 -15.56122 -15.36724 -15.21773 -14.89376 -14.34076 -14.22567 -13.89691 -13.79127 -13.33520 -13.16475 -12.67811 -12.35982 -12.28147 -12.01230 -11.81619 -11.53745 -11.41711 -11.30217 -11.03900 -10.97030 -10.83093 -10.52727 -10.30379 -9.69917 -9.49192 -9.29919 -8.81276 -8.43525 -8.09517 -7.61910 -7.05957 -6.24471 -4.71488 1.29603 1.97074 3.13739 3.19076 3.21050 3.24583 3.75038 4.05910 4.12608 4.39912 4.58376 4.71164 5.00537 5.09114 5.22141 5.31034 5.42190 5.45074 5.52328 5.60736 5.72357 5.76152 5.77194 6.03248 6.09234 6.13737 6.16620 6.41761 6.68811 6.85035 6.96626 6.98324 7.22269 7.22977 7.32639 7.39119 7.58669 7.80426 8.11402 8.23936 8.56402 8.94271 9.30349 10.49100 10.67129 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.011874 B = 0.006282 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.556922 B = 4456.058596 C = 6473.848273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.532 5.532 3 C 0.029 3.971 4 C 0.105 3.895 5 C -0.120 4.120 6 C -0.102 4.102 7 C -0.139 4.139 8 C -0.124 4.124 9 C 0.562 3.438 10 N -0.858 5.858 11 O -0.531 6.531 12 C -0.072 4.072 13 C 0.211 3.789 14 N -0.685 5.685 15 C 0.546 3.454 16 O -0.556 6.556 17 C -0.534 4.534 18 H 0.070 0.930 19 C 0.087 3.913 20 N -0.758 5.758 21 Si 0.911 3.089 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.267 1.267 25 H 0.018 0.982 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.019 0.981 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.398 0.602 36 H 0.399 0.601 37 H 0.160 0.840 38 H 0.392 0.608 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.443 9.201 14.037 16.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.256 5.256 3 C -0.119 4.119 4 C -0.023 4.023 5 C -0.125 4.125 6 C -0.121 4.121 7 C -0.159 4.159 8 C -0.128 4.128 9 C 0.349 3.651 10 N -0.423 5.423 11 O -0.407 6.407 12 C -0.094 4.094 13 C 0.110 3.890 14 N -0.326 5.326 15 C 0.353 3.647 16 O -0.437 6.437 17 C -0.570 4.570 18 H 0.088 0.912 19 C -0.134 4.134 20 N -0.385 5.385 21 Si 0.735 3.265 22 H -0.192 1.192 23 H -0.205 1.205 24 H -0.192 1.192 25 H 0.037 0.963 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.038 0.962 31 H 0.057 0.943 32 H 0.096 0.904 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.227 0.773 36 H 0.230 0.770 37 H 0.177 0.823 38 H 0.225 0.775 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.440 8.428 12.386 14.988 hybrid contribution -1.104 0.393 0.717 1.374 sum -1.544 8.821 13.103 15.871 Atomic orbital electron populations 1.22378 0.87346 1.02496 0.99829 1.61865 1.07282 1.13691 1.42723 1.22356 1.01599 0.88562 0.99367 1.20863 0.92233 0.98047 0.91133 1.19651 0.94883 0.96754 1.01166 1.20530 0.92140 0.99384 1.00061 1.20847 0.95920 0.99282 0.99838 1.19673 0.92385 1.00340 1.00397 1.18443 0.86288 0.80587 0.79775 1.43754 1.09493 1.43027 1.46001 1.90850 1.82783 1.32509 1.34549 1.21759 0.90474 0.99617 0.97529 1.17642 0.89481 0.90833 0.91014 1.44030 1.16001 1.57482 1.15119 1.18353 0.89387 0.78810 0.78188 1.90653 1.25481 1.58607 1.68977 1.20743 0.97733 1.40831 0.97712 0.91218 1.25721 0.95798 0.94242 0.97668 1.69982 1.21022 1.34109 1.13432 0.86381 0.81334 0.80005 0.78764 1.19221 1.20490 1.19218 0.96343 0.91405 0.91136 0.91132 0.91772 0.96237 0.94252 0.90441 0.86543 0.86790 0.77306 0.77046 0.82256 0.77460 0.91738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.53 60.06 0.57 0.91 16 2 N -0.53 -7.88 4.97 -252.73 -1.25 -9.14 16 3 C 0.03 0.39 9.40 60.06 0.56 0.95 16 4 C 0.10 1.44 4.59 -4.98 -0.02 1.42 16 5 C -0.12 -1.96 4.69 -104.32 -0.49 -2.45 16 6 C -0.10 -1.41 9.36 -39.67 -0.37 -1.78 16 7 C -0.14 -1.95 9.54 -39.13 -0.37 -2.33 16 8 C -0.12 -2.27 5.87 -104.99 -0.62 -2.89 16 9 C 0.56 10.15 8.05 -12.32 -0.10 10.06 16 10 N -0.86 -10.09 8.82 30.53 0.27 -9.83 16 11 O -0.53 -12.26 17.18 5.32 0.09 -12.16 16 12 C -0.07 -1.62 8.24 -38.94 -0.32 -1.94 16 13 C 0.21 4.37 6.30 -83.81 -0.53 3.84 16 14 N -0.68 -15.29 5.02 -11.22 -0.06 -15.35 16 15 C 0.55 15.27 7.59 -13.07 -0.10 15.17 16 16 O -0.56 -17.75 12.37 5.15 0.06 -17.68 16 17 C -0.53 -14.71 9.54 -35.69 -0.34 -15.05 16 18 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 19 C 0.09 2.39 5.50 -17.36 -0.10 2.29 16 20 N -0.76 -22.59 11.82 55.55 0.66 -21.94 16 21 Si 0.91 19.89 29.56 -169.99 -5.02 14.86 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 25 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.07 0.81 8.06 -51.93 -0.42 0.39 16 27 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 28 H 0.07 1.03 7.39 -51.93 -0.38 0.64 16 29 H 0.06 0.80 8.03 -51.93 -0.42 0.38 16 30 H 0.02 0.21 8.01 -51.93 -0.42 -0.20 16 31 H 0.04 0.46 7.76 -51.93 -0.40 0.06 16 32 H 0.08 1.02 6.99 -51.93 -0.36 0.66 16 33 H 0.12 1.25 7.99 -52.49 -0.42 0.83 16 34 H 0.11 1.14 6.40 -52.49 -0.34 0.80 16 35 H 0.40 3.34 6.86 -40.82 -0.28 3.06 16 36 H 0.40 4.00 8.93 -40.82 -0.36 3.64 16 37 H 0.16 4.34 5.72 -52.49 -0.30 4.04 16 38 H 0.39 7.59 7.48 -40.82 -0.31 7.29 16 39 H 0.27 7.40 8.29 -40.82 -0.34 7.06 16 LS Contribution 331.24 15.07 4.99 4.99 Total: -1.00 -36.72 331.24 -7.28 -43.99 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -4.79 Total: 14.04 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: -2.22 Total: 8.21 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -0.39 Total: -56.25 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: 0.16 Total: -29.85 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -36.72 -7.28 -43.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320510063.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.229 kcal (2) G-P(sol) polarization free energy of solvation -36.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds