Wall clock time and date at job start Tue Mar 31 2020 06:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46900 * 111.00494 * 2 1 4 4 C 1.46903 * 111.00165 * 123.95730 * 2 1 3 5 5 C 1.50696 * 109.47445 * 164.34259 * 4 2 1 6 6 C 1.38205 * 119.89250 * 105.13546 * 5 4 2 7 7 C 1.38034 * 120.23316 * 179.72393 * 6 5 4 8 8 C 1.39653 * 120.02154 * 0.54820 * 7 6 5 9 9 C 1.47864 * 120.10560 * 179.70673 * 8 7 6 10 10 N 1.34774 * 119.99778 * 0.02562 * 9 8 7 11 11 O 1.21553 * 119.99916 * 180.02562 * 9 8 7 12 12 C 1.39417 * 119.79091 * 359.72667 * 8 7 6 13 13 C 1.38794 * 119.76614 * 359.97438 * 12 8 7 14 14 N 1.39567 * 120.01320 * 179.97438 * 13 12 8 15 15 C 1.34778 * 120.00206 * 326.07671 * 14 13 12 16 16 O 1.21740 * 119.99973 * 4.62511 * 15 14 13 17 17 C 1.46182 * 119.99710 * 184.63305 * 15 14 13 18 18 H 1.07996 * 120.00100 * 359.97438 * 17 15 14 19 19 C 1.40121 * 119.99271 * 179.97438 * 17 15 14 20 20 N 1.30632 * 120.00404 * 359.97438 * 19 17 15 21 21 Si 1.86805 * 119.99720 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46860 * 59.99639 * 21 19 17 23 23 H 1.48493 * 109.47317 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47041 * 300.00224 * 21 19 17 25 25 H 1.09004 * 109.47310 * 296.05029 * 1 2 3 26 26 H 1.09003 * 109.46907 * 56.04415 * 1 2 3 27 27 H 1.08998 * 109.47516 * 176.04628 * 1 2 3 28 28 H 1.08993 * 109.47350 * 188.99012 * 3 2 1 29 29 H 1.08999 * 109.46968 * 308.98734 * 3 2 1 30 30 H 1.08992 * 109.46841 * 68.98536 * 3 2 1 31 31 H 1.09003 * 109.46567 * 284.34731 * 4 2 1 32 32 H 1.09003 * 109.46927 * 44.34136 * 4 2 1 33 33 H 1.07993 * 119.88034 * 359.97438 * 6 5 4 34 34 H 1.07999 * 119.98572 * 180.27279 * 7 6 5 35 35 H 0.96995 * 120.00162 * 359.97438 * 10 9 8 36 36 H 0.97003 * 119.99551 * 180.02562 * 10 9 8 37 37 H 1.07999 * 120.11660 * 180.02562 * 12 8 7 38 38 H 0.97008 * 119.99803 * 146.07460 * 14 13 12 39 39 H 0.97006 * 120.00233 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 3.4526 -1.0722 0.9057 6 6 4.4221 -0.3765 1.6030 7 6 5.7587 -0.6551 1.4004 8 6 6.1364 -1.6350 0.4798 9 6 7.5679 -1.9305 0.2565 10 7 8.5105 -1.2540 0.9423 11 8 7.8945 -2.7835 -0.5455 12 6 5.1595 -2.3335 -0.2283 13 6 3.8178 -2.0506 -0.0131 14 7 2.8356 -2.7463 -0.7196 15 6 3.0683 -3.1390 -1.9877 16 8 4.1636 -2.9618 -2.4885 17 6 2.0052 -3.7775 -2.7617 18 1 1.0336 -3.9349 -2.3173 19 6 2.2470 -4.1852 -4.0803 20 7 3.4221 -3.9944 -4.6180 21 14 0.8888 -5.0018 -5.0693 22 1 -0.2646 -4.0738 -5.1864 23 1 1.3953 -5.3348 -6.4249 24 1 0.4558 -6.2454 -4.3829 25 1 -0.3634 0.4513 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3634 -1.0252 -0.0709 28 1 3.0733 1.3468 -0.1606 29 1 1.5222 1.9423 -0.7988 30 1 1.7817 1.8426 0.9593 31 1 1.8879 -0.1806 2.0507 32 1 1.4395 -1.6984 1.2361 33 1 4.1326 0.3851 2.3119 34 1 6.5128 -0.1120 1.9507 35 1 8.2499 -0.5731 1.5821 36 1 9.4496 -1.4476 0.7956 37 1 5.4457 -3.0927 -0.9412 38 1 1.9854 -2.9472 -0.2978 39 1 3.5894 -4.2763 -5.5310 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320510063.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:39 Heat of formation + Delta-G solvation = -72.055607 kcal Electronic energy + Delta-G solvation = -23425.602711 eV Core-core repulsion = 19945.781841 eV Total energy + Delta-G solvation = -3479.820870 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.40499 -40.19176 -38.85880 -37.63869 -35.42725 -34.71226 -34.36882 -32.52742 -30.69762 -28.46734 -28.35797 -27.74304 -24.46218 -24.00204 -22.44083 -21.91242 -20.95036 -19.51847 -18.92373 -17.90490 -17.46447 -17.01561 -16.70447 -16.36038 -16.17244 -15.85454 -15.77280 -15.32224 -15.13689 -14.88330 -14.56078 -14.41891 -14.07735 -13.36535 -13.20704 -13.17912 -13.03404 -12.76490 -12.73749 -12.58263 -12.46407 -12.26246 -12.12419 -12.05121 -11.22201 -11.02419 -10.80600 -10.72100 -9.90078 -9.64504 -9.09346 -8.71334 -8.31348 -6.88757 -0.09489 0.58818 1.38635 1.43040 1.54721 1.83300 2.22542 2.45107 2.52449 2.88323 3.04930 3.32025 3.65245 3.82677 3.96521 4.07804 4.25155 4.33299 4.44054 4.48407 4.58481 4.69002 4.77536 4.82516 4.90250 5.04247 5.09490 5.10950 5.27734 5.38667 5.44437 5.57765 5.82474 5.84548 5.92266 6.19059 6.22020 6.25027 6.44925 6.47343 6.82138 7.32948 7.41402 8.44001 8.63009 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.011874 B = 0.006282 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.556922 B = 4456.058596 C = 6473.848273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.569 5.569 3 C 0.032 3.968 4 C 0.105 3.895 5 C -0.102 4.102 6 C -0.090 4.090 7 C -0.107 4.107 8 C -0.139 4.139 9 C 0.557 3.443 10 N -0.820 5.820 11 O -0.598 6.598 12 C -0.116 4.116 13 C 0.173 3.827 14 N -0.676 5.676 15 C 0.533 3.467 16 O -0.609 6.609 17 C -0.561 4.561 18 H 0.092 0.908 19 C 0.027 3.973 20 N -0.818 5.818 21 Si 1.001 2.999 22 H -0.251 1.251 23 H -0.277 1.277 24 H -0.253 1.253 25 H 0.044 0.956 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.172 0.828 34 H 0.171 0.829 35 H 0.420 0.580 36 H 0.412 0.588 37 H 0.093 0.907 38 H 0.403 0.597 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.194 11.858 17.382 21.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.293 5.293 3 C -0.116 4.116 4 C -0.022 4.022 5 C -0.106 4.106 6 C -0.108 4.108 7 C -0.126 4.126 8 C -0.143 4.143 9 C 0.344 3.656 10 N -0.386 5.386 11 O -0.480 6.480 12 C -0.138 4.138 13 C 0.074 3.926 14 N -0.319 5.319 15 C 0.339 3.661 16 O -0.495 6.495 17 C -0.597 4.597 18 H 0.110 0.890 19 C -0.188 4.188 20 N -0.447 5.447 21 Si 0.820 3.180 22 H -0.175 1.175 23 H -0.202 1.202 24 H -0.176 1.176 25 H 0.062 0.938 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.189 0.811 34 H 0.189 0.811 35 H 0.253 0.747 36 H 0.244 0.756 37 H 0.111 0.889 38 H 0.239 0.761 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.183 11.161 15.857 19.513 hybrid contribution -0.465 -0.280 -0.117 0.555 sum -2.648 10.880 15.740 19.317 Atomic orbital electron populations 1.22347 0.85936 1.02403 1.00998 1.61766 1.08853 1.14855 1.43867 1.22321 1.00275 0.88014 1.01002 1.20937 0.90115 0.98814 0.92333 1.20052 0.97453 0.94486 0.98595 1.21161 0.91203 0.99036 0.99443 1.21429 0.97778 0.96386 0.97026 1.19790 0.91722 1.01447 1.01367 1.18615 0.87215 0.80291 0.79524 1.43379 1.09124 1.41676 1.44387 1.90823 1.83641 1.35745 1.37793 1.21356 0.92881 1.00641 0.98933 1.17861 0.88267 0.93137 0.93315 1.43427 1.16935 1.57781 1.13802 1.18711 0.88800 0.78631 0.79941 1.90629 1.27349 1.60595 1.70908 1.21307 0.98564 1.41193 0.98599 0.89005 1.27039 0.98638 0.94277 0.98860 1.70191 1.24285 1.36187 1.14087 0.85029 0.77339 0.79166 0.76502 1.17490 1.20166 1.17642 0.93763 0.91737 0.91725 0.92967 0.91915 0.93199 0.90449 0.90332 0.81089 0.81141 0.74687 0.75568 0.88921 0.76076 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 9.53 127.69 1.22 1.90 16 2 N -0.57 -15.55 4.97 -953.50 -4.73 -20.29 16 3 C 0.03 0.74 9.40 127.69 1.20 1.94 16 4 C 0.11 2.54 4.59 85.56 0.39 2.93 16 5 C -0.10 -3.10 4.69 -19.67 -0.09 -3.19 16 6 C -0.09 -2.04 9.36 22.21 0.21 -1.83 16 7 C -0.11 -2.56 9.54 22.56 0.22 -2.35 16 8 C -0.14 -5.16 5.87 -20.10 -0.12 -5.28 16 9 C 0.56 20.57 8.05 86.79 0.70 21.27 16 10 N -0.82 -17.49 8.82 -175.59 -1.55 -19.04 16 11 O -0.60 -29.93 17.18 -3.88 -0.07 -30.00 16 12 C -0.12 -5.62 8.24 22.69 0.19 -5.44 16 13 C 0.17 7.44 6.30 38.25 0.24 7.68 16 14 N -0.68 -32.00 5.02 -307.62 -1.54 -33.55 16 15 C 0.53 32.06 7.59 86.31 0.65 32.71 16 16 O -0.61 -42.74 12.37 -4.48 -0.06 -42.80 16 17 C -0.56 -32.32 9.54 24.79 0.24 -32.08 16 18 H 0.09 4.66 7.85 -2.91 -0.02 4.64 16 19 C 0.03 1.57 5.50 85.33 0.47 2.04 16 20 N -0.82 -52.09 11.82 21.85 0.26 -51.83 16 21 Si 1.00 41.82 29.56 68.60 2.03 43.85 16 22 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 23 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 24 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 25 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 26 H 0.06 1.44 8.06 -2.39 -0.02 1.42 16 27 H 0.06 1.47 8.09 -2.39 -0.02 1.45 16 28 H 0.05 1.38 7.39 -2.39 -0.02 1.36 16 29 H 0.06 1.44 8.03 -2.39 -0.02 1.42 16 30 H 0.05 0.84 8.01 -2.39 -0.02 0.83 16 31 H 0.08 1.32 7.76 -2.39 -0.02 1.30 16 32 H 0.08 1.88 6.99 -2.39 -0.02 1.87 16 33 H 0.17 2.21 7.99 -2.91 -0.02 2.19 16 34 H 0.17 2.16 6.40 -2.91 -0.02 2.14 16 35 H 0.42 5.10 6.86 -92.71 -0.64 4.47 16 36 H 0.41 7.45 8.93 -92.71 -0.83 6.63 16 37 H 0.09 5.75 5.72 -2.91 -0.02 5.74 16 38 H 0.40 16.28 7.48 -92.70 -0.69 15.59 16 39 H 0.27 15.95 8.29 -92.70 -0.77 15.18 16 Total: -1.00 -94.00 331.24 -1.19 -95.19 By element: Atomic # 1 Polarization: 39.20 SS G_CDS: -1.04 Total: 38.16 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: 5.51 Total: 20.30 kcal Atomic # 7 Polarization: -117.14 SS G_CDS: -7.57 Total: -124.71 kcal Atomic # 8 Polarization: -72.67 SS G_CDS: -0.12 Total: -72.79 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -94.00 -1.19 -95.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320510063.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.136 kcal (2) G-P(sol) polarization free energy of solvation -94.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds