Wall clock time and date at job start Tue Mar 31 2020 06:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 120.00144 * 2 1 4 4 O 1.21283 * 119.99840 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00213 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.50421 * 305.08001 * 5 3 2 7 7 C 1.53099 * 109.54593 * 65.19308 * 5 3 2 8 8 N 1.47015 * 109.25924 * 176.80852 * 7 5 3 9 9 C 1.38821 * 111.00126 * 177.60850 * 8 7 5 10 10 C 1.39794 * 119.58590 * 192.52834 * 9 8 7 11 11 C 1.38594 * 119.49321 * 179.97438 * 10 9 8 12 12 C 1.38392 * 118.68006 * 0.27768 * 11 10 9 13 13 C 1.40563 * 119.14464 * 359.46087 * 12 11 10 14 14 C 1.41317 * 119.78256 * 180.27494 * 13 12 11 15 15 H 1.08004 * 120.00224 * 335.56055 * 14 13 12 16 16 C 1.40021 * 120.00304 * 155.56746 * 14 13 12 17 17 N 1.30748 * 120.00500 * 170.41713 * 16 14 13 18 18 Si 1.86803 * 119.99924 * 350.41517 * 16 14 13 19 19 H 1.48504 * 109.47113 * 86.48372 * 18 16 14 20 20 H 1.48495 * 109.47189 * 206.48622 * 18 16 14 21 21 H 1.48508 * 109.47134 * 326.48562 * 18 16 14 22 22 N 1.31957 * 119.58293 * 12.50294 * 9 8 7 23 23 C 1.47020 * 110.75123 * 301.38434 * 8 7 5 24 24 C 1.53095 * 109.25615 * 58.61384 * 23 8 7 25 25 O 1.43012 * 109.26393 * 303.15137 * 24 23 8 26 26 H 1.08998 * 109.46967 * 299.99844 * 1 2 3 27 27 H 1.09000 * 109.47080 * 59.99983 * 1 2 3 28 28 H 1.09002 * 109.47191 * 180.02562 * 1 2 3 29 29 H 0.96996 * 120.00179 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.50255 * 56.86955 * 7 5 3 31 31 H 1.08999 * 109.50185 * 296.74073 * 7 5 3 32 32 H 1.08002 * 120.25481 * 0.02562 * 10 9 8 33 33 H 1.07993 * 120.66279 * 180.02562 * 11 10 9 34 34 H 1.08001 * 120.42987 * 179.71843 * 12 11 10 35 35 H 0.96998 * 120.00262 * 179.97438 * 17 16 14 36 36 H 1.09001 * 109.50242 * 178.55385 * 23 8 7 37 37 H 1.09006 * 109.50256 * 298.64046 * 23 8 7 38 38 H 1.08997 * 109.50848 * 63.09170 * 24 23 8 39 39 H 1.09007 * 109.50287 * 183.21637 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6458 1.1672 -0.0006 6 1 4.0101 0.5765 0.8400 7 6 4.1575 0.5622 -1.3105 8 7 5.6256 0.6351 -1.3375 9 6 6.1320 0.0467 -2.4884 10 6 7.5007 -0.2216 -2.5815 11 6 8.0041 -0.8096 -3.7312 12 6 7.1298 -1.1096 -4.7612 13 6 5.7631 -0.8204 -4.6052 14 6 4.8576 -1.1265 -5.6460 15 1 5.2101 -1.1999 -6.6643 16 6 3.5034 -1.3346 -5.3573 17 7 2.6349 -1.4314 -6.3299 18 14 2.9375 -1.4739 -3.5825 19 1 2.6654 -0.1179 -3.0418 20 1 1.6980 -2.2893 -3.5208 21 1 3.9993 -2.1253 -2.7741 22 7 5.3150 -0.2527 -3.4805 23 6 6.0803 2.0278 -1.2139 24 6 5.5493 2.6181 0.0950 25 8 4.1234 2.5101 0.1171 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.9500 -0.8400 0.0004 30 1 3.7498 1.1207 -2.1531 31 1 3.8436 -0.4795 -1.3773 32 1 8.1608 0.0266 -1.7635 33 1 9.0582 -1.0256 -3.8231 34 1 7.4923 -1.5640 -5.6715 35 1 1.6968 -1.5759 -6.1298 36 1 7.1700 2.0559 -1.2104 37 1 5.7039 2.6095 -2.0554 38 1 5.9689 2.0696 0.9383 39 1 5.8360 3.6675 0.1637 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320665676.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:47 Heat of formation + Delta-G solvation = -31.016366 kcal Electronic energy + Delta-G solvation = -24156.031369 eV Core-core repulsion = 20677.990094 eV Total energy + Delta-G solvation = -3478.041275 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.47397 -39.23143 -38.05341 -35.47259 -34.55390 -33.54878 -31.82640 -31.08952 -30.13517 -27.71029 -26.47149 -25.45406 -24.31208 -22.14671 -21.38251 -20.44725 -20.16678 -18.04662 -17.65761 -16.70466 -16.53620 -15.73149 -15.31006 -15.06901 -14.99531 -14.77636 -14.64654 -14.59163 -14.15446 -13.70950 -13.18653 -12.91466 -12.71810 -12.47661 -12.35336 -12.31913 -11.95387 -11.49154 -11.41415 -10.92928 -10.87354 -10.70692 -10.64844 -10.11415 -9.82423 -9.67259 -9.35039 -9.17448 -8.97167 -8.58950 -8.07032 -7.47089 -6.98829 -4.77369 2.30184 2.50639 2.59145 2.85671 3.18708 3.29067 3.37534 3.85909 4.06585 4.16497 4.40927 4.74939 4.84253 4.98369 5.10610 5.16254 5.24677 5.36026 5.45008 5.47019 5.59502 5.71070 5.73941 5.78352 5.97047 6.04194 6.20861 6.28715 6.31908 6.45037 6.48845 6.85534 6.99410 7.03098 7.22633 7.39415 7.40834 7.48391 7.83078 8.08728 8.19200 8.46677 8.52136 9.38104 9.95789 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013600 B = 0.008018 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.259483 B = 3491.089963 C = 5167.154038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.734 5.734 3 C 0.526 3.474 4 O -0.518 6.518 5 C 0.074 3.926 6 H 0.091 0.909 7 C 0.036 3.964 8 N -0.478 5.478 9 C 0.331 3.669 10 C -0.296 4.296 11 C -0.039 4.039 12 C -0.265 4.265 13 C 0.265 3.735 14 C -0.419 4.419 15 H 0.098 0.902 16 C 0.086 3.914 17 N -0.801 5.801 18 Si 0.968 3.032 19 H -0.259 1.259 20 H -0.321 1.321 21 H -0.268 1.268 22 N -0.589 5.589 23 C 0.023 3.977 24 C 0.065 3.935 25 O -0.357 6.357 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.403 0.597 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.288 0.712 36 H 0.095 0.905 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.321 1.139 12.363 12.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.388 5.388 3 C 0.310 3.690 4 O -0.392 6.392 5 C 0.012 3.988 6 H 0.108 0.892 7 C -0.092 4.092 8 N -0.199 5.199 9 C 0.097 3.903 10 C -0.320 4.320 11 C -0.064 4.064 12 C -0.287 4.287 13 C 0.140 3.860 14 C -0.450 4.450 15 H 0.116 0.884 16 C -0.136 4.136 17 N -0.425 5.425 18 Si 0.801 3.199 19 H -0.185 1.185 20 H -0.252 1.252 21 H -0.194 1.194 22 N -0.311 5.311 23 C -0.104 4.104 24 C -0.012 4.012 25 O -0.275 6.275 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.236 0.764 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.173 1.994 12.671 12.828 hybrid contribution 0.769 -0.647 -0.256 1.037 sum 0.596 1.347 12.415 12.502 Atomic orbital electron populations 1.21561 0.78974 1.02467 1.02479 1.45697 1.08049 1.08490 1.76557 1.20078 0.88887 0.83944 0.76050 1.90702 1.69822 1.31080 1.47582 1.22036 0.91495 0.86018 0.99276 0.89150 1.22936 0.88023 1.02241 0.95970 1.59718 1.09110 1.16451 1.34578 1.19419 0.90485 0.93700 0.86663 1.20617 0.93821 1.16796 1.00808 1.20882 0.97935 0.94565 0.92982 1.21692 0.94683 1.11714 1.00638 1.18370 0.91308 0.87613 0.88664 1.19449 0.91402 1.39109 0.95060 0.88396 1.26289 0.96071 0.89864 1.01383 1.69625 1.04155 1.33196 1.35512 0.85397 0.74753 0.78894 0.80850 1.18473 1.25242 1.19389 1.67153 1.37976 1.22920 1.03078 1.22870 1.01756 0.87281 0.98461 1.22784 0.80365 1.01723 0.96327 1.88075 1.21186 1.24016 1.94232 0.92048 0.91964 0.90383 0.76359 0.90675 0.89350 0.87566 0.87512 0.87258 0.90205 0.88692 0.92903 0.91957 0.87638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.00 10.70 59.85 0.64 1.64 16 2 N -0.73 -9.91 5.68 -67.08 -0.38 -10.29 16 3 C 0.53 8.90 7.18 -10.99 -0.08 8.82 16 4 O -0.52 -10.54 16.51 -14.27 -0.24 -10.78 16 5 C 0.07 1.19 3.21 -27.84 -0.09 1.10 16 6 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 7 C 0.04 0.69 2.84 -3.71 -0.01 0.67 16 8 N -0.48 -8.86 4.71 -172.85 -0.81 -9.67 16 9 C 0.33 7.14 6.14 -155.32 -0.95 6.19 16 10 C -0.30 -5.87 9.38 -38.87 -0.36 -6.23 16 11 C -0.04 -0.78 10.15 -39.39 -0.40 -1.18 16 12 C -0.26 -5.95 9.83 -38.65 -0.38 -6.33 16 13 C 0.27 6.71 5.97 -85.00 -0.51 6.20 16 14 C -0.42 -11.26 9.68 -37.74 -0.37 -11.62 16 15 H 0.10 2.69 8.06 -52.48 -0.42 2.26 16 16 C 0.09 2.28 5.51 -17.34 -0.10 2.18 16 17 N -0.80 -21.36 13.92 55.55 0.77 -20.59 16 18 Si 0.97 22.52 22.64 -169.99 -3.85 18.67 16 19 H -0.26 -5.96 4.91 56.52 0.28 -5.68 16 20 H -0.32 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.27 -6.42 6.71 56.52 0.38 -6.04 16 22 N -0.59 -14.36 4.59 -10.33 -0.05 -14.41 16 23 C 0.02 0.36 5.50 -3.71 -0.02 0.34 16 24 C 0.07 0.86 7.01 37.21 0.26 1.12 16 25 O -0.36 -6.03 10.01 -55.06 -0.55 -6.58 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.40 4.56 8.71 -40.82 -0.36 4.20 16 30 H 0.08 1.67 6.57 -51.93 -0.34 1.33 16 31 H 0.09 1.70 5.10 -51.93 -0.26 1.43 16 32 H 0.11 1.84 7.91 -52.49 -0.42 1.42 16 33 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.11 2.29 8.06 -52.49 -0.42 1.86 16 35 H 0.29 7.01 8.29 -40.82 -0.34 6.67 16 36 H 0.09 1.29 7.54 -51.93 -0.39 0.90 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 315.20 15.07 4.75 4.75 Total: -1.00 -32.02 315.20 -7.99 -40.01 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -5.28 Total: 5.98 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -2.36 Total: 2.90 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: -0.47 Total: -54.96 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.79 Total: -17.36 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -3.85 Total: 18.67 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.02 -7.99 -40.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320665676.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.995 kcal (2) G-P(sol) polarization free energy of solvation -32.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds