Wall clock time and date at job start Tue Mar 31 2020 06:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 120.00144 * 2 1 4 4 O 1.21283 * 119.99840 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00213 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.50421 * 305.08001 * 5 3 2 7 7 C 1.53099 * 109.54593 * 65.19308 * 5 3 2 8 8 N 1.47015 * 109.25924 * 176.80852 * 7 5 3 9 9 C 1.38821 * 111.00126 * 177.60850 * 8 7 5 10 10 C 1.39794 * 119.58590 * 192.52834 * 9 8 7 11 11 C 1.38594 * 119.49321 * 179.97438 * 10 9 8 12 12 C 1.38392 * 118.68006 * 0.27768 * 11 10 9 13 13 C 1.40563 * 119.14464 * 359.46087 * 12 11 10 14 14 C 1.41317 * 119.78256 * 180.27494 * 13 12 11 15 15 H 1.08004 * 120.00224 * 335.56055 * 14 13 12 16 16 C 1.40021 * 120.00304 * 155.56746 * 14 13 12 17 17 N 1.30748 * 120.00500 * 170.41713 * 16 14 13 18 18 Si 1.86803 * 119.99924 * 350.41517 * 16 14 13 19 19 H 1.48504 * 109.47113 * 86.48372 * 18 16 14 20 20 H 1.48495 * 109.47189 * 206.48622 * 18 16 14 21 21 H 1.48508 * 109.47134 * 326.48562 * 18 16 14 22 22 N 1.31957 * 119.58293 * 12.50294 * 9 8 7 23 23 C 1.47020 * 110.75123 * 301.38434 * 8 7 5 24 24 C 1.53095 * 109.25615 * 58.61384 * 23 8 7 25 25 O 1.43012 * 109.26393 * 303.15137 * 24 23 8 26 26 H 1.08998 * 109.46967 * 299.99844 * 1 2 3 27 27 H 1.09000 * 109.47080 * 59.99983 * 1 2 3 28 28 H 1.09002 * 109.47191 * 180.02562 * 1 2 3 29 29 H 0.96996 * 120.00179 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.50255 * 56.86955 * 7 5 3 31 31 H 1.08999 * 109.50185 * 296.74073 * 7 5 3 32 32 H 1.08002 * 120.25481 * 0.02562 * 10 9 8 33 33 H 1.07993 * 120.66279 * 180.02562 * 11 10 9 34 34 H 1.08001 * 120.42987 * 179.71843 * 12 11 10 35 35 H 0.96998 * 120.00262 * 179.97438 * 17 16 14 36 36 H 1.09001 * 109.50242 * 178.55385 * 23 8 7 37 37 H 1.09006 * 109.50256 * 298.64046 * 23 8 7 38 38 H 1.08997 * 109.50848 * 63.09170 * 24 23 8 39 39 H 1.09007 * 109.50287 * 183.21637 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6458 1.1672 -0.0006 6 1 4.0101 0.5765 0.8400 7 6 4.1575 0.5622 -1.3105 8 7 5.6256 0.6351 -1.3375 9 6 6.1320 0.0467 -2.4884 10 6 7.5007 -0.2216 -2.5815 11 6 8.0041 -0.8096 -3.7312 12 6 7.1298 -1.1096 -4.7612 13 6 5.7631 -0.8204 -4.6052 14 6 4.8576 -1.1265 -5.6460 15 1 5.2101 -1.1999 -6.6643 16 6 3.5034 -1.3346 -5.3573 17 7 2.6349 -1.4314 -6.3299 18 14 2.9375 -1.4739 -3.5825 19 1 2.6654 -0.1179 -3.0418 20 1 1.6980 -2.2893 -3.5208 21 1 3.9993 -2.1253 -2.7741 22 7 5.3150 -0.2527 -3.4805 23 6 6.0803 2.0278 -1.2139 24 6 5.5493 2.6181 0.0950 25 8 4.1234 2.5101 0.1171 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.9500 -0.8400 0.0004 30 1 3.7498 1.1207 -2.1531 31 1 3.8436 -0.4795 -1.3773 32 1 8.1608 0.0266 -1.7635 33 1 9.0582 -1.0256 -3.8231 34 1 7.4923 -1.5640 -5.6715 35 1 1.6968 -1.5759 -6.1298 36 1 7.1700 2.0559 -1.2104 37 1 5.7039 2.6095 -2.0554 38 1 5.9689 2.0696 0.9383 39 1 5.8360 3.6675 0.1637 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320665676.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:46 Heat of formation + Delta-G solvation = -55.290157 kcal Electronic energy + Delta-G solvation = -24157.083959 eV Core-core repulsion = 20677.990094 eV Total energy + Delta-G solvation = -3479.093865 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.84802 -40.73253 -39.47691 -36.94492 -35.78984 -35.39581 -33.28529 -32.63277 -31.79521 -28.98102 -28.03633 -26.89671 -25.64853 -23.60157 -23.06230 -21.87673 -21.48947 -19.73114 -19.21551 -18.03357 -17.89763 -17.13713 -16.75465 -16.52325 -16.49965 -16.27263 -16.19649 -15.93328 -15.45347 -15.17778 -14.73357 -14.59281 -14.08892 -13.99066 -13.79947 -13.49425 -13.20266 -13.10070 -12.96090 -12.62011 -12.54036 -12.36247 -12.07440 -11.81500 -11.30287 -11.10257 -11.01350 -10.53167 -10.32812 -10.28022 -9.85988 -9.17117 -8.92582 -6.73813 0.55607 0.77578 1.24646 1.30324 1.43289 1.50857 1.75270 2.26157 2.42755 2.56338 2.93187 3.39879 3.54183 3.64258 3.75861 3.87087 4.04413 4.16668 4.20197 4.35641 4.39166 4.46844 4.54722 4.62863 4.64814 4.70238 4.75213 4.84402 4.85384 4.87762 5.19924 5.23241 5.36023 5.57956 5.68639 5.78795 5.86961 5.97964 6.19680 6.30417 6.57553 6.65454 6.99284 7.57783 8.06952 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013600 B = 0.008018 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.259483 B = 3491.089963 C = 5167.154038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.724 5.724 3 C 0.518 3.482 4 O -0.561 6.561 5 C 0.081 3.919 6 H 0.127 0.873 7 C 0.043 3.957 8 N -0.468 5.468 9 C 0.309 3.691 10 C -0.271 4.271 11 C -0.029 4.029 12 C -0.281 4.281 13 C 0.251 3.749 14 C -0.462 4.462 15 H 0.071 0.929 16 C 0.048 3.952 17 N -0.843 5.843 18 Si 1.023 2.977 19 H -0.263 1.263 20 H -0.308 1.308 21 H -0.277 1.277 22 N -0.607 5.607 23 C 0.021 3.979 24 C 0.066 3.934 25 O -0.381 6.381 26 H 0.068 0.932 27 H 0.044 0.956 28 H 0.115 0.885 29 H 0.415 0.585 30 H 0.033 0.967 31 H 0.081 0.919 32 H 0.147 0.853 33 H 0.154 0.846 34 H 0.116 0.884 35 H 0.293 0.707 36 H 0.122 0.878 37 H 0.025 0.975 38 H 0.091 0.909 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.592 1.022 15.775 16.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.377 5.377 3 C 0.303 3.697 4 O -0.439 6.439 5 C 0.020 3.980 6 H 0.144 0.856 7 C -0.085 4.085 8 N -0.188 5.188 9 C 0.077 3.923 10 C -0.295 4.295 11 C -0.053 4.053 12 C -0.303 4.303 13 C 0.124 3.876 14 C -0.495 4.495 15 H 0.089 0.911 16 C -0.169 4.169 17 N -0.469 5.469 18 Si 0.854 3.146 19 H -0.189 1.189 20 H -0.239 1.239 21 H -0.204 1.204 22 N -0.330 5.330 23 C -0.105 4.105 24 C -0.010 4.010 25 O -0.300 6.300 26 H 0.086 0.914 27 H 0.063 0.937 28 H 0.133 0.867 29 H 0.250 0.750 30 H 0.051 0.949 31 H 0.100 0.900 32 H 0.164 0.836 33 H 0.171 0.829 34 H 0.134 0.866 35 H 0.103 0.897 36 H 0.140 0.860 37 H 0.044 0.956 38 H 0.109 0.891 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.111 1.850 16.098 16.340 hybrid contribution 0.336 -0.542 -1.196 1.355 sum 2.448 1.308 14.902 15.158 Atomic orbital electron populations 1.21787 0.77604 1.04767 1.01960 1.45742 1.09119 1.08119 1.74741 1.20378 0.89446 0.84184 0.75652 1.90676 1.70625 1.32670 1.49955 1.22041 0.90996 0.86288 0.98698 0.85604 1.22750 0.88309 1.01317 0.96142 1.59847 1.08639 1.17962 1.32388 1.19993 0.91452 0.93969 0.86934 1.21168 0.93379 1.13492 1.01479 1.21381 0.99807 0.92580 0.91550 1.21897 0.94051 1.12214 1.02143 1.18488 0.92432 0.87808 0.88835 1.19424 0.92527 1.42795 0.94706 0.91061 1.26932 0.96100 0.89649 1.04195 1.69655 1.04606 1.35969 1.36648 0.84622 0.74328 0.78440 0.77169 1.18927 1.23910 1.20386 1.67078 1.39454 1.22945 1.03546 1.23075 1.03347 0.85124 0.99002 1.23072 0.78516 1.03793 0.95632 1.88069 1.23419 1.24321 1.94165 0.91356 0.93738 0.86694 0.74964 0.94902 0.90038 0.83556 0.82875 0.86618 0.89665 0.85963 0.95617 0.89097 0.84848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.72 10.70 127.77 1.37 3.09 16 2 N -0.72 -18.45 5.68 -484.53 -2.75 -21.20 16 3 C 0.52 17.07 7.18 87.65 0.63 17.70 16 4 O -0.56 -22.92 16.51 15.92 0.26 -22.66 16 5 C 0.08 2.46 3.21 29.88 0.10 2.56 16 6 H 0.13 2.90 8.14 -2.38 -0.02 2.88 16 7 C 0.04 1.59 2.84 86.31 0.25 1.83 16 8 N -0.47 -16.04 4.71 -700.78 -3.30 -19.34 16 9 C 0.31 12.61 6.14 133.42 0.82 13.43 16 10 C -0.27 -9.49 9.38 22.73 0.21 -9.28 16 11 C -0.03 -1.02 10.15 22.39 0.23 -0.80 16 12 C -0.28 -12.31 9.83 22.87 0.22 -12.08 16 13 C 0.25 12.87 5.97 40.18 0.24 13.11 16 14 C -0.46 -26.22 9.68 23.46 0.23 -25.99 16 15 H 0.07 4.23 8.06 -2.91 -0.02 4.21 16 16 C 0.05 2.67 5.51 85.29 0.47 3.14 16 17 N -0.84 -47.40 13.92 21.84 0.30 -47.10 16 18 Si 1.02 48.08 22.64 68.60 1.55 49.63 16 19 H -0.26 -12.37 4.91 99.48 0.49 -11.88 16 20 H -0.31 -13.51 7.11 99.48 0.71 -12.80 16 21 H -0.28 -13.19 6.71 99.48 0.67 -12.53 16 22 N -0.61 -29.55 4.59 -186.58 -0.86 -30.41 16 23 C 0.02 0.58 5.50 86.31 0.48 1.05 16 24 C 0.07 1.48 7.01 72.01 0.50 1.99 16 25 O -0.38 -12.04 10.01 -130.02 -1.30 -13.34 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.41 8.47 8.71 -92.71 -0.81 7.66 16 30 H 0.03 1.48 6.57 -2.39 -0.02 1.47 16 31 H 0.08 3.04 5.10 -2.39 -0.01 3.03 16 32 H 0.15 4.02 7.91 -2.91 -0.02 4.00 16 33 H 0.15 4.06 8.06 -2.91 -0.02 4.03 16 34 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 35 H 0.29 15.00 8.29 -92.71 -0.77 14.23 16 36 H 0.12 2.72 7.54 -2.39 -0.02 2.70 16 37 H 0.03 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.13 2.26 8.14 -2.38 -0.02 2.24 16 Total: -1.00 -73.97 315.20 -0.34 -74.31 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.01 Total: 20.37 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 5.74 Total: 9.74 kcal Atomic # 7 Polarization: -111.45 SS G_CDS: -6.60 Total: -118.05 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -1.04 Total: -36.00 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 1.55 Total: 49.63 kcal Total: -73.97 -0.34 -74.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320665676.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.016 kcal (2) G-P(sol) polarization free energy of solvation -73.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds