Wall clock time and date at job start Tue Mar 31 2020 06:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86307 * 109.47182 * 2 1 4 4 C 1.86299 * 109.46875 * 119.99639 * 2 1 3 5 5 N 1.46904 * 109.47435 * 306.81366 * 4 2 1 6 6 C 1.47016 * 111.00143 * 277.61401 * 5 4 2 7 7 C 1.53096 * 109.25871 * 177.60482 * 6 5 4 8 8 O 1.43014 * 109.25729 * 56.84452 * 7 6 5 9 9 C 1.43014 * 113.74430 * 301.33521 * 8 7 6 10 10 C 1.47013 * 111.00214 * 153.97636 * 5 4 2 11 11 C 1.50702 * 109.50754 * 302.37496 * 10 5 4 12 12 N 1.27941 * 119.99947 * 3.69445 * 11 10 5 13 13 Si 1.86798 * 120.00161 * 183.69114 * 11 10 5 14 14 H 1.48505 * 109.46814 * 59.99742 * 13 11 10 15 15 H 1.48498 * 109.47567 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47120 * 300.00284 * 13 11 10 17 17 C 1.86794 * 109.47418 * 239.99739 * 2 1 3 18 18 C 1.38234 * 120.00176 * 149.73069 * 17 2 1 19 19 C 1.38237 * 120.00212 * 179.76871 * 18 17 2 20 20 C 1.38238 * 119.99794 * 0.50167 * 19 18 17 21 21 C 1.38237 * 119.99986 * 359.74918 * 20 19 18 22 22 C 1.38238 * 119.99978 * 0.02562 * 21 20 19 23 23 H 1.08995 * 109.47357 * 300.00115 * 1 2 3 24 24 H 1.09002 * 109.46917 * 60.00670 * 1 2 3 25 25 H 1.09007 * 109.47207 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47040 * 172.41345 * 3 2 1 27 27 H 1.08995 * 109.46622 * 292.41154 * 3 2 1 28 28 H 1.08998 * 109.46799 * 52.40882 * 3 2 1 29 29 H 1.09005 * 109.47288 * 186.81803 * 4 2 1 30 30 H 1.08998 * 109.47242 * 66.81556 * 4 2 1 31 31 H 1.08992 * 109.50483 * 297.54321 * 6 5 4 32 32 H 1.09002 * 109.50581 * 57.66888 * 6 5 4 33 33 H 1.09007 * 109.50635 * 296.91846 * 7 6 5 34 34 H 1.08998 * 109.50689 * 176.78383 * 7 6 5 35 35 H 1.09001 * 109.50403 * 298.73327 * 9 8 7 36 36 H 1.08995 * 109.54365 * 178.62342 * 9 8 7 37 37 H 1.09007 * 109.50471 * 62.45953 * 10 5 4 38 38 H 0.97005 * 120.00376 * 179.97438 * 12 11 10 39 39 H 1.07999 * 119.99888 * 359.97438 * 18 17 2 40 40 H 1.07995 * 120.00302 * 180.22460 * 19 18 17 41 41 H 1.08000 * 119.99884 * 179.72373 * 20 19 18 42 42 H 1.08001 * 120.00111 * 179.97438 * 21 20 19 43 43 H 1.08000 * 119.99816 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4839 -0.8781 1.5212 5 7 1.8646 -0.2870 2.7150 6 6 2.5780 0.9293 3.1311 7 6 1.8659 1.5441 4.3389 8 8 1.7924 0.5741 5.3872 9 6 1.1035 -0.6232 5.0166 10 6 1.8079 -1.2599 3.8157 11 6 1.0423 -2.4793 3.3706 12 7 0.6243 -2.5672 2.1645 13 14 0.7036 -3.8624 4.5795 14 1 -0.0881 -3.3387 5.7216 15 1 -0.0613 -4.9382 3.8995 16 1 1.9907 -4.4094 5.0791 17 6 2.4857 -0.8806 -1.5251 18 6 3.6909 -0.5115 -2.0927 19 6 4.1540 -1.1664 -3.2185 20 6 3.4070 -2.1835 -3.7829 21 6 2.1993 -2.5491 -3.2183 22 6 1.7384 -1.8973 -2.0898 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 3.5655 1.7595 0.1357 27 1 2.2357 2.2296 -0.9500 28 1 2.0140 2.3080 0.8143 29 1 3.5671 -0.7737 1.5844 30 1 2.2235 -1.9349 1.4624 31 1 3.6025 0.6753 3.4030 32 1 2.5858 1.6457 2.3096 33 1 0.8588 1.8472 4.0523 34 1 2.4235 2.4139 4.6862 35 1 0.0743 -0.3831 4.7497 36 1 1.1091 -1.3211 5.8538 37 1 2.8201 -1.5489 4.0986 38 1 0.1319 -3.3522 1.8778 39 1 4.2722 0.2862 -1.6546 40 1 5.0973 -0.8805 -3.6598 41 1 3.7667 -2.6921 -4.6651 42 1 1.6154 -3.3434 -3.6595 43 1 0.7946 -2.1827 -1.6490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321652269.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:27 Heat of formation + Delta-G solvation = -4.667132 kcal Electronic energy + Delta-G solvation = -22080.172123 eV Core-core repulsion = 19056.364488 eV Total energy + Delta-G solvation = -3023.807635 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.75400 -39.57671 -37.50247 -35.43227 -32.15463 -31.68749 -31.48019 -29.55568 -29.02601 -28.21613 -25.57177 -24.73122 -23.14291 -22.85596 -22.38694 -20.48388 -18.18670 -17.92955 -17.18572 -16.94505 -16.12604 -15.90398 -15.75481 -15.69068 -15.48901 -14.75619 -14.67980 -14.43811 -14.19361 -14.11829 -13.83195 -13.72476 -13.45888 -13.27244 -13.19208 -13.04117 -12.82152 -12.65823 -12.49968 -12.28042 -12.18301 -11.85401 -11.65370 -11.36129 -11.07204 -10.76935 -10.65368 -10.39760 -9.70654 -9.66023 -9.60964 -8.98296 0.48452 0.66150 0.73096 0.95119 1.28288 1.62086 1.74255 1.87713 2.04077 2.11185 2.75303 2.85584 3.10394 3.15707 3.49323 3.93489 4.05653 4.16668 4.19415 4.25664 4.28180 4.33221 4.36520 4.57540 4.67981 4.70404 4.75369 4.75889 4.76013 4.81635 4.89383 4.95524 5.04221 5.06738 5.12783 5.15768 5.27358 5.41093 5.56492 5.67348 5.72125 5.76884 5.86753 5.98136 6.14464 6.18397 6.27716 6.86195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.427 4.427 2 Si 1.095 2.905 3 C -0.456 4.456 4 C -0.243 4.243 5 N -0.490 5.490 6 C -0.004 4.004 7 C 0.060 3.940 8 O -0.379 6.379 9 C 0.070 3.930 10 C 0.070 3.930 11 C -0.006 4.006 12 N -0.597 5.597 13 Si 0.926 3.074 14 H -0.231 1.231 15 H -0.245 1.245 16 H -0.235 1.235 17 C -0.374 4.374 18 C -0.091 4.091 19 C -0.134 4.134 20 C -0.112 4.112 21 C -0.134 4.134 22 C -0.085 4.085 23 H 0.074 0.926 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.033 0.967 30 H 0.114 0.886 31 H 0.044 0.956 32 H 0.099 0.901 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.333 0.667 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.279 -0.564 0.727 0.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.536 4.536 2 Si 1.282 2.718 3 C -0.563 4.563 4 C -0.417 4.417 5 N -0.215 5.215 6 C -0.131 4.131 7 C -0.017 4.017 8 O -0.297 6.297 9 C -0.008 4.008 10 C -0.039 4.039 11 C -0.255 4.255 12 N -0.211 5.211 13 Si 0.741 3.259 14 H -0.154 1.154 15 H -0.168 1.168 16 H -0.158 1.158 17 C -0.416 4.416 18 C -0.109 4.109 19 C -0.152 4.152 20 C -0.130 4.130 21 C -0.153 4.153 22 C -0.103 4.103 23 H 0.093 0.907 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.052 0.948 30 H 0.131 0.869 31 H 0.062 0.938 32 H 0.117 0.883 33 H 0.081 0.919 34 H 0.117 0.883 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.089 0.911 38 H 0.150 0.850 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.744 -0.501 0.506 1.029 hybrid contribution 0.769 -0.985 -0.205 1.266 sum 0.025 -1.486 0.301 1.516 Atomic orbital electron populations 1.25894 1.19575 1.04523 1.03587 0.77665 0.67675 0.64811 0.61601 1.26372 1.05928 1.19406 1.04596 1.27539 0.99681 1.09467 1.05047 1.62358 1.51639 1.04261 1.03217 1.23200 0.96461 0.94164 0.99312 1.22739 1.00827 0.91203 0.86944 1.88024 1.77584 1.26823 1.37290 1.22624 0.95854 0.86960 0.95374 1.21654 0.98400 0.90777 0.93093 1.30086 0.94983 1.01774 0.98636 1.68223 1.07381 1.28204 1.17247 0.85851 0.82872 0.77154 0.79996 1.15358 1.16802 1.15799 1.27471 0.98581 1.03183 1.12354 1.21094 0.95906 0.98541 0.95365 1.21257 0.99941 0.97027 0.97013 1.21207 0.95036 0.97216 0.99551 1.21275 0.96636 1.00332 0.97010 1.21104 0.99111 0.95068 0.95043 0.90665 0.92483 0.90974 0.91476 0.91087 0.90571 0.94825 0.86864 0.93804 0.88261 0.91918 0.88307 0.91474 0.88388 0.91135 0.84974 0.86463 0.86474 0.86417 0.86466 0.86136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.43 -0.06 8.53 101.05 0.86 0.80 16 2 Si 1.10 -0.86 10.78 -169.99 -1.83 -2.70 16 3 C -0.46 0.42 7.50 101.05 0.76 1.18 16 4 C -0.24 -0.03 3.63 60.07 0.22 0.19 16 5 N -0.49 -0.08 3.77 -162.63 -0.61 -0.70 16 6 C 0.00 0.00 5.33 -3.71 -0.02 -0.02 16 7 C 0.06 -0.02 7.01 37.21 0.26 0.25 16 8 O -0.38 -0.61 10.83 -35.23 -0.38 -0.99 16 9 C 0.07 -0.01 5.80 37.20 0.22 0.21 16 10 C 0.07 -0.01 2.08 -68.75 -0.14 -0.15 16 11 C -0.01 0.01 4.88 -13.90 -0.07 -0.06 16 12 N -0.60 0.36 10.19 56.23 0.57 0.93 16 13 Si 0.93 -1.67 27.96 -169.99 -4.75 -6.43 16 14 H -0.23 0.39 7.09 56.52 0.40 0.79 16 15 H -0.25 0.28 7.11 56.52 0.40 0.68 16 16 H -0.24 0.23 7.11 56.52 0.40 0.63 16 17 C -0.37 -0.43 4.59 -39.58 -0.18 -0.61 16 18 C -0.09 -0.14 9.29 -39.58 -0.37 -0.50 16 19 C -0.13 -0.25 10.05 -39.58 -0.40 -0.64 16 20 C -0.11 -0.21 10.05 -39.58 -0.40 -0.61 16 21 C -0.13 -0.24 10.05 -39.58 -0.40 -0.64 16 22 C -0.09 -0.13 9.29 -39.58 -0.37 -0.50 16 23 H 0.07 0.05 7.96 -51.93 -0.41 -0.36 16 24 H 0.06 0.01 7.96 -51.93 -0.41 -0.40 16 25 H 0.07 0.02 7.69 -51.92 -0.40 -0.38 16 26 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 27 H 0.07 -0.04 7.96 -51.93 -0.41 -0.46 16 28 H 0.08 -0.10 6.32 -51.93 -0.33 -0.43 16 29 H 0.03 0.01 7.70 -51.93 -0.40 -0.39 16 30 H 0.11 0.06 4.68 -51.93 -0.24 -0.18 16 31 H 0.04 0.01 8.11 -51.93 -0.42 -0.42 16 32 H 0.10 -0.15 4.45 -51.93 -0.23 -0.38 16 33 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 34 H 0.10 -0.16 8.14 -51.93 -0.42 -0.58 16 35 H 0.07 -0.02 8.14 -51.93 -0.42 -0.45 16 36 H 0.10 -0.17 6.85 -51.93 -0.36 -0.52 16 37 H 0.07 -0.01 8.14 -51.92 -0.42 -0.43 16 38 H 0.33 -0.69 8.23 -40.82 -0.34 -1.03 16 39 H 0.12 -0.04 7.68 -52.49 -0.40 -0.44 16 40 H 0.12 0.02 8.06 -52.49 -0.42 -0.40 16 41 H 0.12 0.02 8.06 -52.49 -0.42 -0.40 16 42 H 0.12 0.01 8.06 -52.49 -0.42 -0.41 16 43 H 0.12 -0.01 7.43 -52.49 -0.39 -0.40 16 LS Contribution 340.62 15.07 5.13 5.13 Total: 0.00 -4.34 340.62 -8.82 -13.16 By element: Atomic # 1 Polarization: -0.39 SS G_CDS: -6.92 Total: -7.31 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -0.03 Total: -1.10 kcal Atomic # 7 Polarization: 0.27 SS G_CDS: -0.04 Total: 0.23 kcal Atomic # 8 Polarization: -0.61 SS G_CDS: -0.38 Total: -0.99 kcal Atomic # 14 Polarization: -2.54 SS G_CDS: -6.59 Total: -9.12 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -4.34 -8.82 -13.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321652269.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.491 kcal (2) G-P(sol) polarization free energy of solvation -4.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds