Wall clock time and date at job start Tue Mar 31 2020 06:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86307 * 109.47182 * 2 1 4 4 C 1.86299 * 109.46875 * 119.99639 * 2 1 3 5 5 N 1.46904 * 109.47435 * 306.81366 * 4 2 1 6 6 C 1.47016 * 111.00143 * 277.61401 * 5 4 2 7 7 C 1.53096 * 109.25871 * 177.60482 * 6 5 4 8 8 O 1.43014 * 109.25729 * 56.84452 * 7 6 5 9 9 C 1.43014 * 113.74430 * 301.33521 * 8 7 6 10 10 C 1.47013 * 111.00214 * 153.97636 * 5 4 2 11 11 C 1.50702 * 109.50754 * 302.37496 * 10 5 4 12 12 N 1.27941 * 119.99947 * 3.69445 * 11 10 5 13 13 Si 1.86798 * 120.00161 * 183.69114 * 11 10 5 14 14 H 1.48505 * 109.46814 * 59.99742 * 13 11 10 15 15 H 1.48498 * 109.47567 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47120 * 300.00284 * 13 11 10 17 17 C 1.86794 * 109.47418 * 239.99739 * 2 1 3 18 18 C 1.38234 * 120.00176 * 149.73069 * 17 2 1 19 19 C 1.38237 * 120.00212 * 179.76871 * 18 17 2 20 20 C 1.38238 * 119.99794 * 0.50167 * 19 18 17 21 21 C 1.38237 * 119.99986 * 359.74918 * 20 19 18 22 22 C 1.38238 * 119.99978 * 0.02562 * 21 20 19 23 23 H 1.08995 * 109.47357 * 300.00115 * 1 2 3 24 24 H 1.09002 * 109.46917 * 60.00670 * 1 2 3 25 25 H 1.09007 * 109.47207 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47040 * 172.41345 * 3 2 1 27 27 H 1.08995 * 109.46622 * 292.41154 * 3 2 1 28 28 H 1.08998 * 109.46799 * 52.40882 * 3 2 1 29 29 H 1.09005 * 109.47288 * 186.81803 * 4 2 1 30 30 H 1.08998 * 109.47242 * 66.81556 * 4 2 1 31 31 H 1.08992 * 109.50483 * 297.54321 * 6 5 4 32 32 H 1.09002 * 109.50581 * 57.66888 * 6 5 4 33 33 H 1.09007 * 109.50635 * 296.91846 * 7 6 5 34 34 H 1.08998 * 109.50689 * 176.78383 * 7 6 5 35 35 H 1.09001 * 109.50403 * 298.73327 * 9 8 7 36 36 H 1.08995 * 109.54365 * 178.62342 * 9 8 7 37 37 H 1.09007 * 109.50471 * 62.45953 * 10 5 4 38 38 H 0.97005 * 120.00376 * 179.97438 * 12 11 10 39 39 H 1.07999 * 119.99888 * 359.97438 * 18 17 2 40 40 H 1.07995 * 120.00302 * 180.22460 * 19 18 17 41 41 H 1.08000 * 119.99884 * 179.72373 * 20 19 18 42 42 H 1.08001 * 120.00111 * 179.97438 * 21 20 19 43 43 H 1.08000 * 119.99816 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4839 -0.8781 1.5212 5 7 1.8646 -0.2870 2.7150 6 6 2.5780 0.9293 3.1311 7 6 1.8659 1.5441 4.3389 8 8 1.7924 0.5741 5.3872 9 6 1.1035 -0.6232 5.0166 10 6 1.8079 -1.2599 3.8157 11 6 1.0423 -2.4793 3.3706 12 7 0.6243 -2.5672 2.1645 13 14 0.7036 -3.8624 4.5795 14 1 -0.0881 -3.3387 5.7216 15 1 -0.0613 -4.9382 3.8995 16 1 1.9907 -4.4094 5.0791 17 6 2.4857 -0.8806 -1.5251 18 6 3.6909 -0.5115 -2.0927 19 6 4.1540 -1.1664 -3.2185 20 6 3.4070 -2.1835 -3.7829 21 6 2.1993 -2.5491 -3.2183 22 6 1.7384 -1.8973 -2.0898 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 3.5655 1.7595 0.1357 27 1 2.2357 2.2296 -0.9500 28 1 2.0140 2.3080 0.8143 29 1 3.5671 -0.7737 1.5844 30 1 2.2235 -1.9349 1.4624 31 1 3.6025 0.6753 3.4030 32 1 2.5858 1.6457 2.3096 33 1 0.8588 1.8472 4.0523 34 1 2.4235 2.4139 4.6862 35 1 0.0743 -0.3831 4.7497 36 1 1.1091 -1.3211 5.8538 37 1 2.8201 -1.5489 4.0986 38 1 0.1319 -3.3522 1.8778 39 1 4.2722 0.2862 -1.6546 40 1 5.0973 -0.8805 -3.6598 41 1 3.7667 -2.6921 -4.6651 42 1 1.6154 -3.3434 -3.6595 43 1 0.7946 -2.1827 -1.6490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321652269.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:26 Heat of formation + Delta-G solvation = 4.978634 kcal Electronic energy + Delta-G solvation = -22079.753851 eV Core-core repulsion = 19056.364488 eV Total energy + Delta-G solvation = -3023.389363 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.72614 -39.63197 -37.47784 -35.39198 -32.10650 -31.74978 -31.53869 -29.53963 -28.96834 -28.20104 -25.53016 -24.71032 -23.21179 -22.92308 -22.33897 -20.44418 -18.13369 -17.97281 -17.16479 -16.91820 -16.06766 -15.94030 -15.75068 -15.66148 -15.54688 -14.75541 -14.61010 -14.39032 -14.23033 -14.11336 -13.82500 -13.66797 -13.46819 -13.26876 -13.16753 -12.95695 -12.75834 -12.68015 -12.46062 -12.20543 -12.09618 -11.89520 -11.60964 -11.32424 -11.04267 -10.77242 -10.63062 -10.39786 -9.75311 -9.72793 -9.57774 -8.97585 0.41089 0.56917 0.82706 1.06668 1.41718 1.74441 1.84830 1.91006 2.07621 2.16612 2.77081 2.90152 3.02618 3.20099 3.57723 3.98247 4.10558 4.12373 4.21110 4.23591 4.29926 4.35637 4.40603 4.63105 4.65673 4.71394 4.74820 4.81683 4.83261 4.87008 4.96272 5.01850 5.05178 5.07860 5.09611 5.11986 5.21859 5.43032 5.58955 5.62727 5.67243 5.69332 5.84941 6.00704 6.17350 6.21316 6.22167 6.98516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.434 4.434 2 Si 1.141 2.859 3 C -0.461 4.461 4 C -0.250 4.250 5 N -0.494 5.494 6 C -0.005 4.005 7 C 0.056 3.944 8 O -0.399 6.399 9 C 0.067 3.933 10 C 0.065 3.935 11 C -0.008 4.008 12 N -0.609 5.609 13 Si 0.961 3.039 14 H -0.230 1.230 15 H -0.253 1.253 16 H -0.247 1.247 17 C -0.385 4.385 18 C -0.105 4.105 19 C -0.150 4.150 20 C -0.128 4.128 21 C -0.149 4.149 22 C -0.099 4.099 23 H 0.070 0.930 24 H 0.055 0.945 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.030 0.970 30 H 0.109 0.891 31 H 0.037 0.963 32 H 0.111 0.889 33 H 0.065 0.935 34 H 0.111 0.889 35 H 0.068 0.932 36 H 0.111 0.889 37 H 0.068 0.932 38 H 0.340 0.660 39 H 0.133 0.867 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.376 -0.272 0.953 1.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.542 4.542 2 Si 1.325 2.675 3 C -0.569 4.569 4 C -0.424 4.424 5 N -0.219 5.219 6 C -0.132 4.132 7 C -0.021 4.021 8 O -0.317 6.317 9 C -0.011 4.011 10 C -0.045 4.045 11 C -0.256 4.256 12 N -0.223 5.223 13 Si 0.777 3.223 14 H -0.152 1.152 15 H -0.177 1.177 16 H -0.171 1.171 17 C -0.426 4.426 18 C -0.123 4.123 19 C -0.167 4.167 20 C -0.146 4.146 21 C -0.167 4.167 22 C -0.117 4.117 23 H 0.089 0.911 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.048 0.952 30 H 0.127 0.873 31 H 0.055 0.945 32 H 0.129 0.871 33 H 0.084 0.916 34 H 0.129 0.871 35 H 0.086 0.914 36 H 0.129 0.871 37 H 0.085 0.915 38 H 0.158 0.842 39 H 0.151 0.849 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.847 -0.219 0.720 1.133 hybrid contribution 0.800 -1.091 -0.291 1.383 sum -0.048 -1.309 0.429 1.379 Atomic orbital electron populations 1.25998 1.20663 1.04276 1.03253 0.76965 0.66288 0.64340 0.59880 1.26402 1.06482 1.19138 1.04828 1.27661 0.99524 1.09503 1.05665 1.62370 1.51688 1.04504 1.03317 1.23245 0.96013 0.94241 0.99722 1.22870 1.01228 0.91278 0.86700 1.87991 1.77885 1.27556 1.38292 1.22740 0.95699 0.86809 0.95862 1.21716 0.98429 0.91145 0.93190 1.30196 0.94714 1.01801 0.98880 1.68190 1.07680 1.28897 1.17566 0.85352 0.81849 0.75969 0.79176 1.15228 1.17678 1.17060 1.27909 0.98498 1.03130 1.13018 1.21397 0.96324 0.99064 0.95484 1.21538 1.00605 0.97213 0.97393 1.21460 0.95316 0.97611 1.00200 1.21540 0.96957 1.00859 0.97357 1.21369 0.99784 0.95339 0.95231 0.91125 0.92597 0.91214 0.90829 0.91152 0.89967 0.95196 0.87335 0.94453 0.87131 0.91647 0.87145 0.91371 0.87123 0.91478 0.84157 0.84927 0.85293 0.85305 0.85340 0.85025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.43 -0.15 8.53 113.37 0.97 0.82 16 2 Si 1.14 -1.90 10.78 68.60 0.74 -1.16 16 3 C -0.46 1.18 7.50 113.37 0.85 2.03 16 4 C -0.25 -0.10 3.63 127.69 0.46 0.36 16 5 N -0.49 -0.22 3.77 -668.44 -2.52 -2.74 16 6 C 0.00 0.00 5.33 86.31 0.46 0.46 16 7 C 0.06 -0.04 7.01 72.01 0.50 0.47 16 8 O -0.40 -1.32 10.83 -148.98 -1.61 -2.94 16 9 C 0.07 -0.01 5.80 72.01 0.42 0.40 16 10 C 0.06 0.01 2.08 44.18 0.09 0.10 16 11 C -0.01 0.01 4.88 88.68 0.43 0.45 16 12 N -0.61 0.59 10.19 24.11 0.25 0.84 16 13 Si 0.96 -3.56 27.96 68.60 1.92 -1.64 16 14 H -0.23 0.91 7.09 99.48 0.71 1.62 16 15 H -0.25 0.61 7.11 99.48 0.71 1.32 16 16 H -0.25 0.45 7.11 99.48 0.71 1.16 16 17 C -0.39 -0.97 4.59 22.27 0.10 -0.87 16 18 C -0.10 -0.33 9.29 22.27 0.21 -0.12 16 19 C -0.15 -0.60 10.05 22.27 0.22 -0.37 16 20 C -0.13 -0.55 10.05 22.27 0.22 -0.32 16 21 C -0.15 -0.61 10.05 22.27 0.22 -0.39 16 22 C -0.10 -0.34 9.29 22.27 0.21 -0.14 16 23 H 0.07 0.10 7.96 -2.39 -0.02 0.08 16 24 H 0.05 0.03 7.96 -2.39 -0.02 0.01 16 25 H 0.07 0.05 7.69 -2.38 -0.02 0.04 16 26 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 27 H 0.07 -0.14 7.96 -2.39 -0.02 -0.15 16 28 H 0.08 -0.29 6.32 -2.39 -0.02 -0.31 16 29 H 0.03 0.03 7.70 -2.38 -0.02 0.01 16 30 H 0.11 0.15 4.68 -2.39 -0.01 0.14 16 31 H 0.04 0.02 8.11 -2.39 -0.02 0.00 16 32 H 0.11 -0.40 4.45 -2.39 -0.01 -0.41 16 33 H 0.07 -0.09 8.14 -2.38 -0.02 -0.11 16 34 H 0.11 -0.39 8.14 -2.39 -0.02 -0.41 16 35 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 36 H 0.11 -0.39 6.85 -2.39 -0.02 -0.41 16 37 H 0.07 0.03 8.14 -2.38 -0.02 0.01 16 38 H 0.34 -1.34 8.23 -92.70 -0.76 -2.10 16 39 H 0.13 -0.13 7.68 -2.91 -0.02 -0.15 16 40 H 0.13 0.07 8.06 -2.91 -0.02 0.04 16 41 H 0.13 0.11 8.06 -2.91 -0.02 0.09 16 42 H 0.13 0.09 8.06 -2.91 -0.02 0.06 16 43 H 0.13 0.03 7.43 -2.91 -0.02 0.00 16 Total: 0.00 -9.71 340.62 5.13 -4.59 By element: Atomic # 1 Polarization: -0.80 SS G_CDS: 0.98 Total: 0.18 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 5.37 Total: 2.88 kcal Atomic # 7 Polarization: 0.37 SS G_CDS: -2.27 Total: -1.90 kcal Atomic # 8 Polarization: -1.32 SS G_CDS: -1.61 Total: -2.94 kcal Atomic # 14 Polarization: -5.46 SS G_CDS: 2.66 Total: -2.80 kcal Total: -9.71 5.13 -4.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321652269.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.564 kcal (2) G-P(sol) polarization free energy of solvation -9.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds