Wall clock time and date at job start Tue Mar 31 2020 06:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28084 * 119.15878 * 2 1 4 4 C 1.31200 * 122.96803 * 179.09342 * 3 2 1 5 5 C 1.39827 * 119.66139 * 359.52614 * 4 3 2 6 6 C 1.36834 * 118.75770 * 1.11488 * 5 4 3 7 7 C 1.34692 * 119.15665 * 179.72300 * 2 1 3 8 8 O 1.22066 * 120.52031 * 1.29242 * 7 2 1 9 9 C 1.50509 * 122.52259 * 181.56516 * 5 4 3 10 10 N 1.46792 * 109.46060 * 348.19060 * 9 5 4 11 11 C 1.34769 * 121.26901 * 224.55592 * 10 9 5 12 12 O 1.21277 * 120.00357 * 179.97438 * 11 10 9 13 13 C 1.50703 * 120.00040 * 359.97299 * 11 10 9 14 14 C 1.52999 * 109.47271 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47271 * 180.02562 * 14 13 11 16 16 H 1.07994 * 119.99994 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00026 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99933 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99976 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47057 * 90.00108 * 19 17 15 21 21 H 1.48504 * 109.47261 * 210.00057 * 19 17 15 22 22 H 1.48500 * 109.47411 * 330.00228 * 19 17 15 23 23 C 1.47169 * 117.46210 * 44.52965 * 10 9 5 24 24 C 1.50625 * 117.99834 * 179.18304 * 4 3 2 25 25 H 1.08994 * 109.47250 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47369 * 120.00569 * 1 2 3 27 27 H 1.08999 * 109.47223 * 240.00313 * 1 2 3 28 28 H 1.07992 * 121.02080 * 179.28914 * 6 5 4 29 29 H 1.08997 * 109.47210 * 228.19362 * 9 5 4 30 30 H 1.09002 * 109.47300 * 108.18901 * 9 5 4 31 31 H 1.08997 * 109.47377 * 300.00145 * 13 11 10 32 32 H 1.09001 * 109.47257 * 60.00383 * 13 11 10 33 33 H 1.08997 * 109.47076 * 300.00375 * 14 13 11 34 34 H 1.09004 * 109.46839 * 60.00520 * 14 13 11 35 35 H 0.97004 * 120.00228 * 180.02562 * 18 17 15 36 36 H 1.09002 * 109.71855 * 175.66064 * 23 10 9 37 37 H 1.08999 * 109.71631 * 55.01533 * 23 10 9 38 38 H 1.08997 * 109.22477 * 280.15503 * 24 4 3 39 39 H 1.09007 * 109.21928 * 39.54563 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0891 1.1185 0.0000 4 6 3.3980 1.2058 0.0174 5 6 4.1689 0.0396 0.0471 6 6 3.5317 -1.1713 0.0339 7 6 2.1212 -1.1762 0.0057 8 8 1.5052 -2.2299 -0.0129 9 6 5.6728 0.0648 0.1030 10 7 6.1492 1.4274 -0.1640 11 6 7.1841 1.6560 -0.9964 12 8 7.5586 2.7913 -1.2009 13 6 7.8761 0.5010 -1.6732 14 6 9.0066 1.0310 -2.5576 15 6 9.6982 -0.1240 -3.2349 16 1 9.3646 -1.1349 -3.0532 17 6 10.7569 0.1099 -4.0866 18 7 11.3601 -0.8980 -4.6781 19 14 11.3344 1.8584 -4.4005 20 1 12.3762 2.2215 -3.4065 21 1 11.9017 1.9542 -5.7695 22 1 10.1845 2.7897 -4.2749 23 6 5.4533 2.5343 0.5116 24 6 4.0155 2.5795 -0.0036 25 1 -0.3633 1.0276 -0.0005 26 1 -0.3634 -0.5139 -0.8899 27 1 -0.3633 -0.5138 0.8900 28 1 4.0914 -2.0948 0.0444 29 1 6.0757 -0.6147 -0.6480 30 1 6.0049 -0.2489 1.0926 31 1 8.2884 -0.1685 -0.9183 32 1 7.1588 -0.0426 -2.2881 33 1 8.5939 1.7002 -3.3125 34 1 9.7241 1.5748 -1.9431 35 1 12.1052 -0.7335 -5.2771 36 1 5.9544 3.4757 0.2864 37 1 5.4530 2.3657 1.5885 38 1 4.0121 2.9589 -1.0254 39 1 3.4291 3.2462 0.6287 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324256651.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:38 Heat of formation + Delta-G solvation = -4.732236 kcal Electronic energy + Delta-G solvation = -22893.161443 eV Core-core repulsion = 19416.259934 eV Total energy + Delta-G solvation = -3476.901509 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.39658 -39.96614 -38.18385 -37.05814 -34.34297 -33.77708 -33.22963 -31.45278 -30.38390 -28.94917 -26.70855 -25.87730 -24.87219 -23.33081 -22.23544 -20.79168 -19.41154 -18.21241 -17.61208 -17.14996 -17.04378 -16.45767 -16.24468 -15.58104 -15.44996 -14.70708 -14.38746 -14.10086 -13.91094 -13.64892 -13.56807 -13.36947 -13.24181 -13.00820 -12.69939 -12.57159 -12.42374 -12.19427 -11.63199 -11.48757 -11.25752 -11.00875 -10.33751 -10.16737 -10.12081 -10.03795 -9.82817 -9.35780 -9.21345 -8.84638 -8.60353 -8.53615 -6.05827 -4.05128 0.17549 1.27743 1.94886 2.86375 2.92479 3.05878 3.35625 3.42628 3.52485 3.73000 4.06490 4.17028 4.38158 4.48076 4.73738 4.83986 4.84975 4.92311 5.02016 5.05910 5.16188 5.23076 5.28090 5.29559 5.31381 5.42786 5.61000 5.69635 5.75933 5.85173 5.93827 5.99110 6.35511 6.59590 7.30242 7.34019 7.37530 7.41054 7.74869 7.86289 8.38609 8.50445 8.96636 9.56900 11.06901 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.024436 B = 0.003523 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.582848 B = 7945.875714 C = 8672.581239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.344 5.344 3 N -0.229 5.229 4 C 0.080 3.920 5 C -0.038 4.038 6 C -0.191 4.191 7 C 0.477 3.523 8 O -0.536 6.536 9 C 0.144 3.856 10 N -0.628 5.628 11 C 0.520 3.480 12 O -0.531 6.531 13 C -0.124 4.124 14 C 0.002 3.998 15 C -0.526 4.526 16 H 0.073 0.927 17 C 0.069 3.931 18 N -0.903 5.903 19 Si 0.877 3.123 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.261 1.261 23 C 0.111 3.889 24 C -0.067 4.067 25 H 0.099 0.901 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.168 0.832 29 H 0.117 0.883 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.024 0.976 34 H 0.020 0.980 35 H 0.264 0.736 36 H 0.107 0.893 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.056 4.669 13.624 24.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.164 5.164 3 N -0.053 5.053 4 C -0.090 4.090 5 C -0.044 4.044 6 C -0.222 4.222 7 C 0.276 3.724 8 O -0.415 6.415 9 C 0.021 3.979 10 N -0.364 5.364 11 C 0.310 3.690 12 O -0.405 6.405 13 C -0.164 4.164 14 C -0.036 4.036 15 C -0.564 4.564 16 H 0.091 0.909 17 C -0.132 4.132 18 N -0.541 5.541 19 Si 0.704 3.296 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.185 1.185 23 C -0.012 4.012 24 C -0.107 4.107 25 H 0.117 0.883 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.186 0.814 29 H 0.135 0.865 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.042 0.958 34 H 0.038 0.962 35 H 0.073 0.927 36 H 0.125 0.875 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.892 5.109 13.330 25.303 hybrid contribution 0.807 0.053 -0.217 0.837 sum -20.085 5.162 13.113 24.536 Atomic orbital electron populations 1.22122 0.74076 1.04927 1.04389 1.46580 1.09568 1.02777 1.57472 1.70907 1.11771 1.12102 1.10521 1.21475 0.87261 0.96826 1.03458 1.21013 0.98238 0.92823 0.92366 1.22636 0.93062 0.99698 1.06789 1.17965 0.89751 0.84063 0.80612 1.90993 1.69518 1.29038 1.51966 1.20619 0.87693 0.85611 1.04026 1.48269 1.34179 1.06264 1.47640 1.21552 0.78242 0.92086 0.77079 1.90661 1.63949 1.24406 1.61528 1.21745 0.99542 0.95201 0.99868 1.19380 0.92631 0.97025 0.94586 1.21089 1.15263 0.93646 1.26431 0.90915 1.24972 0.96045 0.96986 0.95206 1.69909 1.22985 1.30834 1.30392 0.86800 0.79639 0.85735 0.77402 1.20211 1.21445 1.18524 1.21552 0.90352 0.92793 0.96509 1.20583 0.95681 0.90193 1.04267 0.88281 0.89600 0.89670 0.81403 0.86509 0.88520 0.89347 0.89496 0.95801 0.96171 0.92675 0.87461 0.90766 0.88956 0.88436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 10.23 59.85 0.61 1.23 16 2 N -0.34 -3.66 3.61 -70.17 -0.25 -3.92 16 3 N -0.23 -2.36 10.69 33.70 0.36 -2.00 16 4 C 0.08 0.79 6.73 -82.30 -0.55 0.24 16 5 C -0.04 -0.37 5.81 -104.63 -0.61 -0.98 16 6 C -0.19 -1.99 9.75 -39.01 -0.38 -2.38 16 7 C 0.48 5.95 7.48 -15.22 -0.11 5.83 16 8 O -0.54 -8.19 17.11 4.86 0.08 -8.11 16 9 C 0.14 1.34 6.11 -5.13 -0.03 1.30 16 10 N -0.63 -7.49 2.94 -174.52 -0.51 -8.00 16 11 C 0.52 8.60 7.72 -10.99 -0.08 8.52 16 12 O -0.53 -10.73 15.46 5.56 0.09 -10.65 16 13 C -0.12 -2.22 4.06 -27.88 -0.11 -2.34 16 14 C 0.00 0.04 3.33 -27.88 -0.09 -0.05 16 15 C -0.53 -14.63 9.66 -34.44 -0.33 -14.96 16 16 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 17 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 18 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 19 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 23 C 0.11 1.05 6.40 -3.78 -0.02 1.03 16 24 C -0.07 -0.57 6.12 -28.02 -0.17 -0.74 16 25 H 0.10 0.50 8.05 -51.93 -0.42 0.09 16 26 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.17 1.45 8.06 -52.49 -0.42 1.02 16 29 H 0.12 1.06 6.19 -51.93 -0.32 0.74 16 30 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.09 1.43 8.11 -51.93 -0.42 1.01 16 32 H 0.09 1.45 7.58 -51.93 -0.39 1.05 16 33 H 0.02 0.60 7.16 -51.93 -0.37 0.22 16 34 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 35 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.11 1.14 7.06 -51.93 -0.37 0.78 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 325.74 15.07 4.91 4.91 Total: -1.00 -36.16 325.74 -6.44 -42.60 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: -5.23 Total: -4.11 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -1.99 Total: -1.37 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.37 Total: -40.72 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.17 Total: -18.75 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -36.16 -6.44 -42.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324256651.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.871 kcal (2) G-P(sol) polarization free energy of solvation -36.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds