Wall clock time and date at job start Tue Mar 31 2020 06:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28084 * 119.15878 * 2 1 4 4 C 1.31200 * 122.96803 * 179.09342 * 3 2 1 5 5 C 1.39827 * 119.66139 * 359.52614 * 4 3 2 6 6 C 1.36834 * 118.75770 * 1.11488 * 5 4 3 7 7 C 1.34692 * 119.15665 * 179.72300 * 2 1 3 8 8 O 1.22066 * 120.52031 * 1.29242 * 7 2 1 9 9 C 1.50509 * 122.52259 * 181.56516 * 5 4 3 10 10 N 1.46792 * 109.46060 * 348.19060 * 9 5 4 11 11 C 1.34769 * 121.26901 * 224.55592 * 10 9 5 12 12 O 1.21277 * 120.00357 * 179.97438 * 11 10 9 13 13 C 1.50703 * 120.00040 * 359.97299 * 11 10 9 14 14 C 1.52999 * 109.47271 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47271 * 180.02562 * 14 13 11 16 16 H 1.07994 * 119.99994 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00026 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99933 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99976 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47057 * 90.00108 * 19 17 15 21 21 H 1.48504 * 109.47261 * 210.00057 * 19 17 15 22 22 H 1.48500 * 109.47411 * 330.00228 * 19 17 15 23 23 C 1.47169 * 117.46210 * 44.52965 * 10 9 5 24 24 C 1.50625 * 117.99834 * 179.18304 * 4 3 2 25 25 H 1.08994 * 109.47250 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47369 * 120.00569 * 1 2 3 27 27 H 1.08999 * 109.47223 * 240.00313 * 1 2 3 28 28 H 1.07992 * 121.02080 * 179.28914 * 6 5 4 29 29 H 1.08997 * 109.47210 * 228.19362 * 9 5 4 30 30 H 1.09002 * 109.47300 * 108.18901 * 9 5 4 31 31 H 1.08997 * 109.47377 * 300.00145 * 13 11 10 32 32 H 1.09001 * 109.47257 * 60.00383 * 13 11 10 33 33 H 1.08997 * 109.47076 * 300.00375 * 14 13 11 34 34 H 1.09004 * 109.46839 * 60.00520 * 14 13 11 35 35 H 0.97004 * 120.00228 * 180.02562 * 18 17 15 36 36 H 1.09002 * 109.71855 * 175.66064 * 23 10 9 37 37 H 1.08999 * 109.71631 * 55.01533 * 23 10 9 38 38 H 1.08997 * 109.22477 * 280.15503 * 24 4 3 39 39 H 1.09007 * 109.21928 * 39.54563 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0891 1.1185 0.0000 4 6 3.3980 1.2058 0.0174 5 6 4.1689 0.0396 0.0471 6 6 3.5317 -1.1713 0.0339 7 6 2.1212 -1.1762 0.0057 8 8 1.5052 -2.2299 -0.0129 9 6 5.6728 0.0648 0.1030 10 7 6.1492 1.4274 -0.1640 11 6 7.1841 1.6560 -0.9964 12 8 7.5586 2.7913 -1.2009 13 6 7.8761 0.5010 -1.6732 14 6 9.0066 1.0310 -2.5576 15 6 9.6982 -0.1240 -3.2349 16 1 9.3646 -1.1349 -3.0532 17 6 10.7569 0.1099 -4.0866 18 7 11.3601 -0.8980 -4.6781 19 14 11.3344 1.8584 -4.4005 20 1 12.3762 2.2215 -3.4065 21 1 11.9017 1.9542 -5.7695 22 1 10.1845 2.7897 -4.2749 23 6 5.4533 2.5343 0.5116 24 6 4.0155 2.5795 -0.0036 25 1 -0.3633 1.0276 -0.0005 26 1 -0.3634 -0.5139 -0.8899 27 1 -0.3633 -0.5138 0.8900 28 1 4.0914 -2.0948 0.0444 29 1 6.0757 -0.6147 -0.6480 30 1 6.0049 -0.2489 1.0926 31 1 8.2884 -0.1685 -0.9183 32 1 7.1588 -0.0426 -2.2881 33 1 8.5939 1.7002 -3.3125 34 1 9.7241 1.5748 -1.9431 35 1 12.1052 -0.7335 -5.2771 36 1 5.9544 3.4757 0.2864 37 1 5.4530 2.3657 1.5885 38 1 4.0121 2.9589 -1.0254 39 1 3.4291 3.2462 0.6287 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324256651.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:37 Heat of formation + Delta-G solvation = -30.092781 kcal Electronic energy + Delta-G solvation = -22894.261158 eV Core-core repulsion = 19416.259934 eV Total energy + Delta-G solvation = -3478.001225 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.21785 -41.08185 -39.17850 -38.04000 -35.58626 -35.22700 -34.27554 -33.21072 -31.35282 -29.74513 -28.24220 -26.81372 -25.81605 -24.24463 -23.43268 -22.21221 -20.44325 -19.47088 -18.79033 -18.38388 -17.92044 -17.58394 -17.35169 -16.70628 -16.49837 -16.18040 -15.48309 -15.41007 -14.89963 -14.77446 -14.55527 -14.44278 -14.36377 -14.12473 -13.76027 -13.56764 -13.46693 -13.27257 -13.02547 -12.86587 -12.41905 -12.17540 -11.98891 -11.93142 -11.73778 -11.36139 -11.04041 -11.00932 -10.75245 -10.67473 -9.80823 -9.46838 -8.28759 -6.31518 -0.61901 0.42693 1.20920 1.35831 1.38223 1.52400 1.65233 1.89176 2.22663 2.37444 2.94828 3.07459 3.26266 3.42773 3.53373 3.84408 4.11865 4.18385 4.27006 4.29769 4.35272 4.37804 4.48967 4.53667 4.56157 4.58346 4.64249 4.71705 4.87664 4.90121 4.99827 5.04515 5.14806 5.35724 5.47671 5.50055 5.63797 6.24639 6.31057 6.47028 6.75647 7.05125 7.19609 7.34078 8.86830 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.024436 B = 0.003523 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.582848 B = 7945.875714 C = 8672.581239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.344 5.344 3 N -0.230 5.230 4 C 0.075 3.925 5 C -0.029 4.029 6 C -0.198 4.198 7 C 0.464 3.536 8 O -0.577 6.577 9 C 0.141 3.859 10 N -0.617 5.617 11 C 0.524 3.476 12 O -0.574 6.574 13 C -0.120 4.120 14 C 0.005 3.995 15 C -0.527 4.527 16 H 0.051 0.949 17 C 0.012 3.988 18 N -0.945 5.945 19 Si 0.937 3.063 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.259 1.259 23 C 0.109 3.891 24 C -0.060 4.060 25 H 0.122 0.878 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.182 0.818 29 H 0.121 0.879 30 H 0.130 0.870 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.009 0.991 34 H 0.012 0.988 35 H 0.266 0.734 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.986 5.925 15.110 26.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.163 5.163 3 N -0.055 5.055 4 C -0.095 4.095 5 C -0.036 4.036 6 C -0.228 4.228 7 C 0.265 3.735 8 O -0.459 6.459 9 C 0.018 3.982 10 N -0.350 5.350 11 C 0.315 3.685 12 O -0.453 6.453 13 C -0.159 4.159 14 C -0.033 4.033 15 C -0.565 4.565 16 H 0.069 0.931 17 C -0.186 4.186 18 N -0.586 5.586 19 Si 0.762 3.238 20 H -0.193 1.193 21 H -0.208 1.208 22 H -0.183 1.183 23 C -0.013 4.013 24 C -0.100 4.100 25 H 0.140 0.860 26 H 0.104 0.896 27 H 0.110 0.890 28 H 0.200 0.800 29 H 0.139 0.861 30 H 0.148 0.852 31 H 0.126 0.874 32 H 0.118 0.882 33 H 0.027 0.973 34 H 0.030 0.970 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.122 0.878 38 H 0.102 0.898 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -21.867 6.375 14.852 27.191 hybrid contribution 1.013 -0.370 -0.634 1.251 sum -20.854 6.005 14.218 25.944 Atomic orbital electron populations 1.22377 0.72430 1.06570 1.04792 1.46799 1.10744 1.02421 1.56374 1.70983 1.11999 1.11647 1.10851 1.21794 0.87356 0.97517 1.02788 1.21008 0.98361 0.92502 0.91727 1.22745 0.92386 1.00666 1.06983 1.18302 0.90552 0.84091 0.80597 1.90967 1.70336 1.30300 1.54334 1.20884 0.87217 0.84069 1.05998 1.48148 1.32680 1.08242 1.45979 1.21072 0.79207 0.90650 0.77575 1.90649 1.65725 1.25577 1.63384 1.21568 0.98288 0.96140 0.99924 1.19231 0.94107 0.95196 0.94804 1.21449 1.15010 0.94046 1.26009 0.93083 1.25814 0.96586 1.00758 0.95393 1.70029 1.23974 1.32944 1.31648 0.85839 0.79268 0.81033 0.77644 1.19278 1.20771 1.18322 1.21774 0.90220 0.91402 0.97904 1.20571 0.95223 0.89828 1.04362 0.85990 0.89560 0.88988 0.80032 0.86137 0.85216 0.87368 0.88248 0.97274 0.97007 0.92482 0.88586 0.87752 0.89814 0.85754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.01 10.23 127.77 1.31 2.32 16 2 N -0.34 -6.80 3.61 -494.03 -1.79 -8.59 16 3 N -0.23 -4.21 10.69 -47.30 -0.51 -4.72 16 4 C 0.07 1.28 6.73 43.01 0.29 1.56 16 5 C -0.03 -0.49 5.81 -19.87 -0.12 -0.61 16 6 C -0.20 -3.76 9.75 22.64 0.22 -3.54 16 7 C 0.46 11.12 7.48 84.95 0.64 11.76 16 8 O -0.58 -17.59 17.11 -5.53 -0.09 -17.69 16 9 C 0.14 2.13 6.11 85.52 0.52 2.65 16 10 N -0.62 -12.95 2.94 -824.44 -2.42 -15.37 16 11 C 0.52 16.41 7.72 87.66 0.68 17.08 16 12 O -0.57 -22.68 15.46 -3.02 -0.05 -22.72 16 13 C -0.12 -4.11 4.06 29.85 0.12 -3.99 16 14 C 0.00 0.22 3.33 29.85 0.10 0.32 16 15 C -0.53 -29.44 9.66 25.60 0.25 -29.19 16 16 H 0.05 3.00 7.99 -2.91 -0.02 2.97 16 17 C 0.01 0.70 5.47 84.65 0.46 1.16 16 18 N -0.95 -58.48 13.96 21.45 0.30 -58.18 16 19 Si 0.94 45.72 27.47 68.60 1.88 47.60 16 20 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 22 H -0.26 -12.45 6.54 99.48 0.65 -11.80 16 23 C 0.11 1.72 6.40 86.19 0.55 2.28 16 24 C -0.06 -0.83 6.12 29.76 0.18 -0.65 16 25 H 0.12 0.98 8.05 -2.39 -0.02 0.96 16 26 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.18 2.80 8.06 -2.91 -0.02 2.78 16 29 H 0.12 1.82 6.19 -2.39 -0.01 1.80 16 30 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.11 3.26 8.11 -2.39 -0.02 3.24 16 32 H 0.10 3.14 7.58 -2.39 -0.02 3.12 16 33 H 0.01 0.45 7.16 -2.39 -0.02 0.43 16 34 H 0.01 0.57 7.53 -2.38 -0.02 0.55 16 35 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 36 H 0.10 1.83 7.06 -2.39 -0.02 1.82 16 37 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.12 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -79.14 325.74 3.54 -75.60 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: 1.01 Total: 2.91 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 5.20 Total: 1.16 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: -4.41 Total: -86.85 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: -0.14 Total: -40.41 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.88 Total: 47.60 kcal Total: -79.14 3.54 -75.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324256651.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.503 kcal (2) G-P(sol) polarization free energy of solvation -79.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds