Wall clock time and date at job start Tue Mar 31 2020 06:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34122 * 125.69684 * 2 1 4 4 C 1.38623 * 107.33957 * 179.97438 * 3 2 1 5 5 C 1.46924 * 126.49301 * 179.97438 * 4 3 2 6 6 O 1.21418 * 119.99636 * 0.02562 * 5 4 3 7 7 C 1.49301 * 120.00019 * 180.02562 * 5 4 3 8 8 O 1.21368 * 120.00096 * 351.29962 * 7 5 4 9 9 N 1.34779 * 119.99972 * 171.02193 * 7 5 4 10 10 C 1.46924 * 120.63060 * 351.28724 * 9 7 5 11 11 C 1.52760 * 109.00723 * 233.58377 * 10 9 7 12 12 C 1.53046 * 109.37821 * 305.58399 * 11 10 9 13 13 C 1.50702 * 109.44555 * 181.25526 * 12 11 10 14 14 H 1.08004 * 119.99909 * 239.93826 * 13 12 11 15 15 C 1.37876 * 120.00236 * 59.93952 * 13 12 11 16 16 N 1.31520 * 119.99816 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00476 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47130 * 59.99641 * 17 15 13 19 19 H 1.48497 * 109.47633 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47276 * 300.00270 * 17 15 13 21 21 C 1.53037 * 109.53714 * 61.24552 * 12 11 10 22 22 C 1.46924 * 120.63032 * 171.55824 * 9 7 5 23 23 C 1.41575 * 107.01841 * 0.22871 * 4 3 2 24 24 N 1.30349 * 107.98740 * 359.60969 * 23 4 3 25 25 H 1.08998 * 109.46994 * 90.00354 * 1 2 3 26 26 H 1.09002 * 109.47182 * 210.00010 * 1 2 3 27 27 H 1.09000 * 109.47037 * 330.00392 * 1 2 3 28 28 H 1.08000 * 126.33033 * 359.97438 * 3 2 1 29 29 H 1.09005 * 109.58406 * 353.41392 * 10 9 7 30 30 H 1.09000 * 109.58937 * 113.83853 * 10 9 7 31 31 H 1.08998 * 109.56583 * 185.55293 * 11 10 9 32 32 H 1.09001 * 109.39063 * 65.50881 * 11 10 9 33 33 H 1.09003 * 109.45975 * 301.21799 * 12 11 10 34 34 H 0.96997 * 120.00082 * 179.97438 * 16 15 13 35 35 H 1.09000 * 109.49767 * 178.68358 * 21 12 11 36 36 H 1.09000 * 109.52996 * 58.59778 * 21 12 11 37 37 H 1.08996 * 109.59215 * 246.15776 * 22 9 7 38 38 H 1.09001 * 109.58957 * 6.44744 * 22 9 7 39 39 H 1.07995 * 126.00590 * 179.77796 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2476 1.0892 0.0000 4 6 3.5633 0.6526 0.0006 5 6 4.7646 1.4985 0.0003 6 8 4.6555 2.7078 -0.0001 7 6 6.1194 0.8711 0.0004 8 8 6.2334 -0.3267 0.1598 9 7 7.2154 1.6340 -0.1820 10 6 7.0889 3.0453 -0.5703 11 6 7.9265 3.2936 -1.8234 12 6 9.3653 2.8373 -1.5711 13 6 10.2002 3.1098 -2.7958 14 1 10.6924 2.2951 -3.3061 15 6 10.3356 4.3993 -3.2648 16 7 9.7358 5.3913 -2.6437 17 14 11.3710 4.7373 -4.7824 18 1 10.8124 3.9917 -5.9388 19 1 11.3566 6.1926 -5.0775 20 1 12.7676 4.2963 -4.5371 21 6 9.3807 1.3375 -1.2671 22 6 8.5595 1.0686 -0.0021 23 6 3.5302 -0.7627 -0.0045 24 7 2.2814 -1.1362 0.0006 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.9143 2.1165 -0.0004 29 1 6.0439 3.2745 -0.7796 30 1 7.4494 3.6807 0.2387 31 1 7.9188 4.3569 -2.0629 32 1 7.5069 2.7299 -2.6567 33 1 9.7762 3.3842 -0.7224 34 1 9.8314 6.2985 -2.9735 35 1 10.4081 1.0085 -1.1105 36 1 8.9476 0.7913 -2.1050 37 1 9.0425 1.5393 0.8540 38 1 8.4845 -0.0058 0.1657 39 1 4.3887 -1.4178 -0.0088 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325151610.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:30 Heat of formation + Delta-G solvation = 3.675725 kcal Electronic energy + Delta-G solvation = -23076.630713 eV Core-core repulsion = 19600.093801 eV Total energy + Delta-G solvation = -3476.536913 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.50748 -41.45472 -39.45254 -38.48805 -35.35263 -34.37900 -33.02150 -31.76513 -31.54632 -28.82855 -28.07580 -26.21716 -24.35920 -24.06451 -22.64065 -21.91313 -21.05415 -20.08860 -18.51378 -18.27231 -17.89260 -17.19969 -16.92168 -16.51270 -16.34100 -15.93642 -15.46170 -15.36981 -14.97506 -14.74528 -14.58527 -14.33556 -13.99865 -13.88500 -13.52146 -13.47931 -13.26674 -13.12333 -12.79045 -12.53437 -12.38829 -12.13882 -11.92421 -11.81719 -11.47012 -11.00482 -10.95020 -10.63208 -10.43137 -10.07817 -9.79789 -9.62164 -8.06257 -6.20039 -0.31431 0.79921 1.40130 1.42804 1.43896 1.44009 1.51644 1.75605 2.34801 2.45258 2.97902 3.20020 3.57610 3.76938 3.94780 4.14421 4.19930 4.31036 4.35278 4.43982 4.50831 4.55441 4.57790 4.64254 4.72283 4.81127 4.90212 5.01036 5.18529 5.21622 5.38035 5.43366 5.45457 5.64328 5.82004 5.97811 6.07289 6.13496 6.35097 6.40690 6.48700 6.89119 6.90281 7.47558 8.97182 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.028707 B = 0.003483 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.124023 B = 8036.207107 C = 8454.355278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.356 5.356 3 C 0.156 3.844 4 C -0.343 4.343 5 C 0.431 3.569 6 O -0.446 6.446 7 C 0.480 3.520 8 O -0.541 6.541 9 N -0.577 5.577 10 C 0.088 3.912 11 C -0.115 4.115 12 C 0.044 3.956 13 C -0.535 4.535 14 H 0.049 0.951 15 C 0.015 3.985 16 N -0.913 5.913 17 Si 0.951 3.049 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.273 1.273 21 C -0.113 4.113 22 C 0.111 3.889 23 C 0.109 3.891 24 N -0.330 5.330 25 H 0.096 0.904 26 H 0.099 0.901 27 H 0.125 0.875 28 H 0.227 0.773 29 H 0.122 0.878 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.024 0.976 33 H 0.004 0.996 34 H 0.261 0.739 35 H 0.069 0.931 36 H 0.043 0.957 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.747 -7.339 6.707 21.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.132 5.132 3 C 0.001 3.999 4 C -0.356 4.356 5 C 0.308 3.692 6 O -0.321 6.321 7 C 0.266 3.734 8 O -0.421 6.421 9 N -0.309 5.309 10 C -0.033 4.033 11 C -0.154 4.154 12 C 0.025 3.975 13 C -0.574 4.574 14 H 0.068 0.932 15 C -0.184 4.184 16 N -0.552 5.552 17 Si 0.777 3.223 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.198 1.198 21 C -0.151 4.151 22 C -0.011 4.011 23 C -0.079 4.079 24 N -0.150 5.150 25 H 0.115 0.885 26 H 0.118 0.882 27 H 0.143 0.857 28 H 0.243 0.757 29 H 0.139 0.861 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.043 0.957 33 H 0.022 0.978 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -19.751 -8.154 6.791 22.422 hybrid contribution 1.627 1.048 -0.947 2.155 sum -18.124 -7.106 5.844 20.325 Atomic orbital electron populations 1.22499 0.70364 1.07011 1.05664 1.48928 1.09006 1.03198 1.52072 1.23731 0.89055 0.95298 0.91838 1.20451 0.93393 0.94400 1.27368 1.21368 0.88254 0.87792 0.71766 1.90388 1.88179 1.16379 1.37198 1.20907 0.86851 0.87025 0.78637 1.90586 1.86718 1.14359 1.50396 1.48361 1.06103 1.12499 1.63951 1.22605 1.04099 0.79181 0.97429 1.21745 0.96290 1.02740 0.94589 1.18634 0.92674 0.91077 0.95094 1.21531 1.30229 0.92961 1.12634 0.93224 1.25681 0.96824 0.96221 0.99631 1.69960 1.44159 0.99803 1.41321 0.85729 0.79482 0.76910 0.80204 1.20030 1.20891 1.19801 1.21847 0.99082 0.98183 0.96006 1.21813 0.81037 0.99904 0.98344 1.24644 0.95205 0.94444 0.93572 1.77181 1.02322 1.08975 1.26520 0.88549 0.88240 0.85650 0.75706 0.86080 0.91910 0.90312 0.95709 0.97781 0.92937 0.91200 0.93780 0.90485 0.88816 0.78389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.49 11.44 127.77 1.46 1.96 16 2 N -0.36 -6.07 3.97 -367.38 -1.46 -7.53 16 3 C 0.16 2.79 11.32 84.44 0.96 3.75 16 4 C -0.34 -8.86 6.12 -20.09 -0.12 -8.99 16 5 C 0.43 13.17 7.02 27.53 0.19 13.37 16 6 O -0.45 -14.18 13.80 -3.46 -0.05 -14.23 16 7 C 0.48 16.71 7.69 87.22 0.67 17.38 16 8 O -0.54 -19.51 13.75 -3.30 -0.05 -19.56 16 9 N -0.58 -21.32 2.98 -821.48 -2.45 -23.77 16 10 C 0.09 3.45 5.93 86.22 0.51 3.96 16 11 C -0.11 -5.42 5.14 30.53 0.16 -5.26 16 12 C 0.04 2.16 2.07 -11.51 -0.02 2.14 16 13 C -0.54 -29.35 8.56 25.60 0.22 -29.13 16 14 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 15 C 0.02 0.84 5.30 84.65 0.45 1.29 16 16 N -0.91 -51.70 11.30 21.45 0.24 -51.45 16 17 Si 0.95 43.43 29.54 68.60 2.03 45.46 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 21 C -0.11 -4.67 5.30 30.67 0.16 -4.50 16 22 C 0.11 3.96 6.45 86.36 0.56 4.51 16 23 C 0.11 2.90 11.14 85.74 0.95 3.86 16 24 N -0.33 -8.07 12.48 -56.13 -0.70 -8.77 16 25 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 26 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.13 -0.04 8.14 -2.39 -0.02 -0.06 16 28 H 0.23 2.29 8.06 -2.91 -0.02 2.26 16 29 H 0.12 4.56 4.39 -39.73 -0.17 4.38 16 30 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.08 4.15 6.03 -2.39 -0.01 4.14 16 32 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 35 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.09 3.15 7.01 -2.39 -0.02 3.13 16 39 H 0.20 5.49 6.31 -2.91 -0.02 5.47 16 Total: -1.00 -68.05 323.72 4.62 -63.44 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 0.91 Total: 12.09 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 6.14 Total: 4.33 kcal Atomic # 7 Polarization: -87.16 SS G_CDS: -4.36 Total: -91.53 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -0.09 Total: -33.79 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -68.05 4.62 -63.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325151610.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.112 kcal (2) G-P(sol) polarization free energy of solvation -68.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds