Wall clock time and date at job start Tue Mar 31 2020 06:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46503 * 109.47215 * 2 1 4 4 C 1.46498 * 119.99508 * 93.65462 * 3 2 1 5 5 C 1.50706 * 109.47060 * 90.00439 * 4 3 2 6 6 H 1.07996 * 119.99741 * 359.97438 * 5 4 3 7 7 C 1.37870 * 119.99894 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00460 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99865 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47097 * 59.99967 * 9 7 5 11 11 H 1.48502 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47348 * 300.00040 * 9 7 5 13 13 C 1.34777 * 120.00212 * 273.65850 * 3 2 1 14 14 O 1.21475 * 119.99576 * 185.40288 * 13 3 2 15 15 C 1.48449 * 119.99709 * 5.40322 * 13 3 2 16 16 C 1.39186 * 120.51127 * 186.02916 * 15 13 3 17 17 C 1.39601 * 118.20407 * 180.02562 * 16 15 13 18 18 O 1.35515 * 120.49218 * 180.02562 * 17 16 15 19 19 N 1.32675 * 119.01600 * 359.97438 * 17 16 15 20 20 C 1.31859 * 120.93686 * 0.02562 * 19 17 16 21 21 C 1.50704 * 119.00177 * 180.02562 * 20 19 17 22 22 C 1.52999 * 117.50067 * 8.74269 * 21 20 19 23 23 C 1.53000 * 117.49738 * 300.08400 * 21 20 19 24 24 N 1.31555 * 121.98917 * 359.70861 * 20 19 17 25 25 H 1.09002 * 109.47282 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46406 * 299.99649 * 1 2 3 27 27 H 1.09001 * 109.47284 * 59.99428 * 1 2 3 28 28 H 1.09001 * 109.46406 * 240.00350 * 2 1 3 29 29 H 1.09001 * 109.47284 * 120.00572 * 2 1 3 30 30 H 1.08997 * 109.47084 * 209.99942 * 4 3 2 31 31 H 1.08996 * 109.47429 * 330.00016 * 4 3 2 32 32 H 0.97003 * 120.00272 * 179.97438 * 8 7 5 33 33 H 1.07992 * 120.90170 * 359.97438 * 16 15 13 34 34 H 0.96698 * 114.00408 * 89.99820 * 18 17 16 35 35 H 1.08998 * 115.55190 * 154.41611 * 21 20 19 36 36 H 1.08998 * 117.49602 * 0.02562 * 22 21 20 37 37 H 1.09000 * 117.49879 * 145.02269 * 22 21 20 38 38 H 1.08999 * 117.50061 * 214.98436 * 23 21 20 39 39 H 1.09003 * 117.50047 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3388 2.0448 1.2662 5 6 3.7856 1.7997 1.6097 6 1 4.4043 1.2085 0.9510 7 6 4.3192 2.3303 2.7650 8 7 3.5659 3.0507 3.5669 9 14 6.1123 2.0259 3.1912 10 1 6.9766 2.5708 2.1135 11 1 6.4372 2.6986 4.4746 12 1 6.3485 0.5659 3.3245 13 6 2.1729 2.0414 -1.1648 14 8 2.6695 3.1500 -1.1733 15 6 1.7360 1.4139 -2.4372 16 6 2.0026 2.0294 -3.6568 17 6 1.5694 1.3971 -4.8236 18 8 1.8046 1.9550 -6.0359 19 7 0.9249 0.2413 -4.7279 20 6 0.6917 -0.3096 -3.5529 21 6 -0.0437 -1.6237 -3.4950 22 6 -0.3008 -2.3483 -4.8178 23 6 -1.4569 -1.6687 -4.0798 24 7 1.0871 0.2501 -2.4299 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.1650 3.1164 1.1690 31 1 1.7047 1.6442 2.0570 32 1 3.9413 3.4237 4.3799 33 1 2.5296 2.9710 -3.6993 34 1 2.6410 1.6836 -6.4382 35 1 0.1570 -2.2365 -2.6163 36 1 0.0625 -1.8747 -5.7299 37 1 -0.2695 -3.4378 -4.8092 38 1 -2.1857 -2.3113 -3.5860 39 1 -1.8548 -0.7477 -4.5060 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326781935.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:18 Heat of formation + Delta-G solvation = 22.258638 kcal Electronic energy + Delta-G solvation = -23367.733370 eV Core-core repulsion = 19892.002273 eV Total energy + Delta-G solvation = -3475.731097 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.49526 -39.00734 -38.10310 -36.78168 -35.47144 -33.42840 -32.56094 -31.38313 -29.97430 -27.54647 -25.46802 -24.84544 -23.04510 -22.84971 -22.52574 -21.40066 -19.44644 -18.69521 -17.79023 -16.56582 -16.43445 -15.93101 -15.79234 -15.66748 -15.21678 -14.65776 -14.49321 -14.21330 -13.82162 -13.33822 -13.11745 -12.50368 -12.37003 -12.27219 -11.91226 -11.70912 -11.56196 -11.23653 -10.99896 -10.94972 -10.91879 -10.75317 -10.62337 -10.54890 -10.20644 -10.08720 -9.77074 -9.62598 -9.34657 -8.90281 -8.45037 -7.72541 -6.06196 -4.11215 0.53571 0.68772 2.91361 3.10166 3.31541 3.35718 3.38099 3.46332 3.65171 3.71828 4.02248 4.37187 4.47283 4.65265 4.73934 4.80658 4.81312 4.98784 5.26859 5.31488 5.45105 5.48899 5.63366 5.69152 5.88563 5.93230 5.97120 6.01588 6.03292 6.37210 6.49150 6.72435 6.80926 7.01897 7.12964 7.36308 7.47376 7.86600 7.90621 8.18598 8.29020 8.76136 8.95289 9.53517 11.01930 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020961 B = 0.004346 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.497338 B = 6441.271475 C = 7154.776470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.110 3.890 3 N -0.566 5.566 4 C 0.245 3.755 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.550 3.450 14 O -0.524 6.524 15 C 0.162 3.838 16 C -0.194 4.194 17 C 0.360 3.640 18 O -0.473 6.473 19 N -0.532 5.532 20 C 0.361 3.639 21 C -0.099 4.099 22 C -0.154 4.154 23 C -0.154 4.154 24 N -0.479 5.479 25 H 0.055 0.945 26 H 0.046 0.954 27 H 0.056 0.944 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.038 0.962 32 H 0.264 0.736 33 H 0.164 0.836 34 H 0.408 0.592 35 H 0.134 0.866 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.489 -10.505 -16.046 20.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 N -0.296 5.296 4 C 0.126 3.874 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.333 3.667 14 O -0.400 6.400 15 C 0.015 3.985 16 C -0.219 4.219 17 C 0.171 3.829 18 O -0.280 6.280 19 N -0.257 5.257 20 C 0.094 3.906 21 C -0.119 4.119 22 C -0.192 4.192 23 C -0.193 4.193 24 N -0.197 5.197 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.106 0.894 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.182 0.818 34 H 0.267 0.733 35 H 0.152 0.848 36 H 0.127 0.873 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.156 -10.291 -15.699 20.467 hybrid contribution 1.877 0.550 0.091 1.958 sum -6.279 -9.740 -15.608 19.440 Atomic orbital electron populations 1.22049 0.96462 1.01059 1.01220 1.21726 0.94090 0.82806 1.02708 1.48239 1.60400 1.13777 1.07143 1.19417 0.96158 0.93989 0.77855 1.21350 0.95543 1.33138 1.06534 0.92425 1.24919 0.98157 0.94843 0.96051 1.69920 1.36130 1.34254 1.13014 0.86542 0.84825 0.78327 0.77629 1.20172 1.21140 1.20220 1.17670 0.80858 0.85651 0.82494 1.90785 1.44007 1.19601 1.85596 1.22128 0.91311 0.89821 0.95226 1.22987 1.02869 1.04108 0.91901 1.19273 0.90627 0.87264 0.85706 1.84727 1.45395 1.67334 1.30593 1.67483 1.16239 1.11416 1.30574 1.22028 0.91774 0.94539 0.82273 1.20658 0.98689 0.92474 1.00105 1.23031 1.01580 0.99265 0.95323 1.22993 0.90125 1.03224 1.02924 1.68860 1.11210 1.09873 1.29767 0.92593 0.93461 0.92502 0.89363 0.90893 0.93815 0.94382 0.92596 0.81819 0.73314 0.84795 0.87333 0.88134 0.87785 0.88622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.55 37.16 0.35 -1.90 16 2 C 0.11 1.93 5.67 -4.04 -0.02 1.91 16 3 N -0.57 -12.37 2.46 -175.94 -0.43 -12.80 16 4 C 0.24 6.39 5.10 -5.19 -0.03 6.36 16 5 C -0.53 -14.89 9.39 -34.44 -0.32 -15.22 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 9 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.55 11.89 7.64 -12.05 -0.09 11.80 16 14 O -0.52 -13.10 16.07 5.39 0.09 -13.01 16 15 C 0.16 2.80 6.54 -82.70 -0.54 2.26 16 16 C -0.19 -2.93 9.68 -38.72 -0.37 -3.30 16 17 C 0.36 4.74 7.84 -16.68 -0.13 4.61 16 18 O -0.47 -4.95 13.58 -18.24 -0.25 -5.20 16 19 N -0.53 -7.10 9.35 -10.79 -0.10 -7.20 16 20 C 0.36 4.81 7.31 -157.34 -1.15 3.66 16 21 C -0.10 -1.00 6.23 -91.77 -0.57 -1.58 16 22 C -0.15 -1.27 10.01 -26.70 -0.27 -1.54 16 23 C -0.15 -1.31 10.24 -26.69 -0.27 -1.58 16 24 N -0.48 -7.29 4.13 -7.38 -0.03 -7.32 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.89 6.34 -51.93 -0.33 0.56 16 28 H 0.09 1.45 5.62 -51.93 -0.29 1.16 16 29 H 0.07 1.30 8.04 -51.93 -0.42 0.88 16 30 H 0.04 1.27 7.50 -51.93 -0.39 0.88 16 31 H 0.04 1.00 8.07 -51.93 -0.42 0.58 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.16 2.39 7.74 -52.49 -0.41 1.99 16 34 H 0.41 2.07 9.06 45.56 0.41 2.49 16 35 H 0.13 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.11 1.01 7.53 -51.93 -0.39 0.62 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 335.27 15.07 5.05 5.05 Total: -1.00 -33.47 335.27 -7.79 -41.26 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -4.31 Total: 0.96 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: -3.52 Total: 7.17 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 0.17 Total: -52.97 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.16 Total: -18.21 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.47 -7.79 -41.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326781935.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.515 kcal (2) G-P(sol) polarization free energy of solvation -33.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds