Wall clock time and date at job start Tue Mar 31 2020 06:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46503 * 109.47215 * 2 1 4 4 C 1.46498 * 119.99508 * 93.65462 * 3 2 1 5 5 C 1.50706 * 109.47060 * 90.00439 * 4 3 2 6 6 H 1.07996 * 119.99741 * 359.97438 * 5 4 3 7 7 C 1.37870 * 119.99894 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00460 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99865 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47097 * 59.99967 * 9 7 5 11 11 H 1.48502 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47348 * 300.00040 * 9 7 5 13 13 C 1.34777 * 120.00212 * 273.65850 * 3 2 1 14 14 O 1.21475 * 119.99576 * 185.40288 * 13 3 2 15 15 C 1.48449 * 119.99709 * 5.40322 * 13 3 2 16 16 C 1.39186 * 120.51127 * 186.02916 * 15 13 3 17 17 C 1.39601 * 118.20407 * 180.02562 * 16 15 13 18 18 O 1.35515 * 120.49218 * 180.02562 * 17 16 15 19 19 N 1.32675 * 119.01600 * 359.97438 * 17 16 15 20 20 C 1.31859 * 120.93686 * 0.02562 * 19 17 16 21 21 C 1.50704 * 119.00177 * 180.02562 * 20 19 17 22 22 C 1.52999 * 117.50067 * 8.74269 * 21 20 19 23 23 C 1.53000 * 117.49738 * 300.08400 * 21 20 19 24 24 N 1.31555 * 121.98917 * 359.70861 * 20 19 17 25 25 H 1.09002 * 109.47282 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46406 * 299.99649 * 1 2 3 27 27 H 1.09001 * 109.47284 * 59.99428 * 1 2 3 28 28 H 1.09001 * 109.46406 * 240.00350 * 2 1 3 29 29 H 1.09001 * 109.47284 * 120.00572 * 2 1 3 30 30 H 1.08997 * 109.47084 * 209.99942 * 4 3 2 31 31 H 1.08996 * 109.47429 * 330.00016 * 4 3 2 32 32 H 0.97003 * 120.00272 * 179.97438 * 8 7 5 33 33 H 1.07992 * 120.90170 * 359.97438 * 16 15 13 34 34 H 0.96698 * 114.00408 * 89.99820 * 18 17 16 35 35 H 1.08998 * 115.55190 * 154.41611 * 21 20 19 36 36 H 1.08998 * 117.49602 * 0.02562 * 22 21 20 37 37 H 1.09000 * 117.49879 * 145.02269 * 22 21 20 38 38 H 1.08999 * 117.50061 * 214.98436 * 23 21 20 39 39 H 1.09003 * 117.50047 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3388 2.0448 1.2662 5 6 3.7856 1.7997 1.6097 6 1 4.4043 1.2085 0.9510 7 6 4.3192 2.3303 2.7650 8 7 3.5659 3.0507 3.5669 9 14 6.1123 2.0259 3.1912 10 1 6.9766 2.5708 2.1135 11 1 6.4372 2.6986 4.4746 12 1 6.3485 0.5659 3.3245 13 6 2.1729 2.0414 -1.1648 14 8 2.6695 3.1500 -1.1733 15 6 1.7360 1.4139 -2.4372 16 6 2.0026 2.0294 -3.6568 17 6 1.5694 1.3971 -4.8236 18 8 1.8046 1.9550 -6.0359 19 7 0.9249 0.2413 -4.7279 20 6 0.6917 -0.3096 -3.5529 21 6 -0.0437 -1.6237 -3.4950 22 6 -0.3008 -2.3483 -4.8178 23 6 -1.4569 -1.6687 -4.0798 24 7 1.0871 0.2501 -2.4299 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.1650 3.1164 1.1690 31 1 1.7047 1.6442 2.0570 32 1 3.9413 3.4237 4.3799 33 1 2.5296 2.9710 -3.6993 34 1 2.6410 1.6836 -6.4382 35 1 0.1570 -2.2365 -2.6163 36 1 0.0625 -1.8747 -5.7299 37 1 -0.2695 -3.4378 -4.8092 38 1 -2.1857 -2.3113 -3.5860 39 1 -1.8548 -0.7477 -4.5060 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326781935.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:17 Heat of formation + Delta-G solvation = -1.422472 kcal Electronic energy + Delta-G solvation = -23368.760260 eV Core-core repulsion = 19892.002273 eV Total energy + Delta-G solvation = -3476.757987 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.65310 -40.60871 -38.99995 -37.65536 -37.18659 -35.07247 -34.20078 -32.51550 -31.55517 -29.42581 -26.83407 -26.02928 -24.81124 -24.21180 -23.16255 -22.57958 -20.61790 -19.87399 -19.16482 -18.59401 -17.78367 -17.18687 -17.01551 -16.76847 -16.74454 -16.21901 -15.94649 -15.35534 -15.09781 -14.82076 -14.56954 -14.30511 -13.60336 -13.34435 -13.26212 -13.20529 -13.09002 -12.65952 -12.54645 -12.33671 -12.21741 -12.10023 -11.87679 -11.77526 -11.68185 -11.47083 -11.32017 -11.25526 -10.65012 -10.41972 -10.20242 -9.54250 -8.23762 -6.38729 -0.72174 -0.37215 1.37223 1.41299 1.48664 1.61965 1.86712 2.19865 2.37390 2.46050 2.57354 3.05708 3.09768 3.17017 3.56048 3.72828 3.93299 4.09752 4.12167 4.21466 4.30691 4.49428 4.58137 4.74103 4.86159 4.87090 4.97399 5.03014 5.06624 5.15471 5.19538 5.23422 5.38371 5.51932 5.54042 5.61476 5.79925 6.01443 6.40951 6.53687 6.68272 6.78763 7.09560 7.32818 8.83646 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020961 B = 0.004346 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.497338 B = 6441.271475 C = 7154.776470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.109 3.891 3 N -0.573 5.573 4 C 0.260 3.740 5 C -0.545 4.545 6 H 0.052 0.948 7 C 0.011 3.989 8 N -0.926 5.926 9 Si 0.968 3.032 10 H -0.277 1.277 11 H -0.277 1.277 12 H -0.261 1.261 13 C 0.545 3.455 14 O -0.572 6.572 15 C 0.147 3.853 16 C -0.200 4.200 17 C 0.379 3.621 18 O -0.471 6.471 19 N -0.528 5.528 20 C 0.361 3.639 21 C -0.118 4.118 22 C -0.140 4.140 23 C -0.146 4.146 24 N -0.484 5.484 25 H 0.092 0.908 26 H 0.031 0.969 27 H 0.051 0.949 28 H 0.104 0.896 29 H 0.067 0.933 30 H 0.002 0.998 31 H 0.030 0.970 32 H 0.269 0.731 33 H 0.161 0.839 34 H 0.433 0.567 35 H 0.148 0.852 36 H 0.098 0.902 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.675 -13.071 -17.667 23.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.013 4.013 3 N -0.302 5.302 4 C 0.140 3.860 5 C -0.583 4.583 6 H 0.071 0.929 7 C -0.188 4.188 8 N -0.566 5.566 9 Si 0.792 3.208 10 H -0.203 1.203 11 H -0.202 1.202 12 H -0.185 1.185 13 C 0.330 3.670 14 O -0.451 6.451 15 C 0.002 3.998 16 C -0.225 4.225 17 C 0.189 3.811 18 O -0.282 6.282 19 N -0.254 5.254 20 C 0.095 3.905 21 C -0.138 4.138 22 C -0.177 4.177 23 C -0.184 4.184 24 N -0.202 5.202 25 H 0.111 0.889 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.122 0.878 29 H 0.085 0.915 30 H 0.020 0.980 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.179 0.821 34 H 0.297 0.703 35 H 0.166 0.834 36 H 0.116 0.884 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.350 -12.907 -17.349 23.180 hybrid contribution 1.867 1.340 0.453 2.342 sum -6.483 -11.567 -16.896 21.478 Atomic orbital electron populations 1.21946 0.94283 1.03102 1.00202 1.21976 0.95810 0.80358 1.03150 1.48256 1.60644 1.15311 1.06001 1.18898 0.95428 0.91948 0.79764 1.21595 0.96468 1.33433 1.06844 0.92950 1.25830 1.02877 0.94305 0.95791 1.70037 1.38199 1.34890 1.13450 0.85460 0.78850 0.79043 0.77410 1.20274 1.20159 1.18535 1.18254 0.79813 0.85166 0.83753 1.90735 1.46060 1.21665 1.86655 1.21392 0.93563 0.91344 0.93530 1.22988 1.03316 1.04213 0.91939 1.19225 0.89290 0.86616 0.85999 1.84685 1.47165 1.67253 1.29102 1.67666 1.16087 1.11205 1.30447 1.22713 0.90907 0.95291 0.81578 1.20878 0.99712 0.91283 1.01941 1.23109 1.00467 1.00496 0.93664 1.23080 0.89831 1.03098 1.02419 1.68748 1.11470 1.09108 1.30913 0.88906 0.94955 0.92970 0.87785 0.91464 0.97970 0.95184 0.92254 0.82095 0.70294 0.83434 0.88387 0.85602 0.85425 0.89963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 9.55 71.98 0.69 -3.32 16 2 C 0.11 3.81 5.67 86.38 0.49 4.30 16 3 N -0.57 -26.08 2.46 -828.87 -2.04 -28.12 16 4 C 0.26 14.35 5.10 85.64 0.44 14.79 16 5 C -0.54 -31.81 9.39 25.60 0.24 -31.57 16 6 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 7 C 0.01 0.66 5.46 84.65 0.46 1.12 16 8 N -0.93 -56.03 13.29 21.44 0.28 -55.74 16 9 Si 0.97 44.95 29.54 68.60 2.03 46.97 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 12 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 13 C 0.54 24.62 7.64 86.97 0.66 25.28 16 14 O -0.57 -30.37 16.07 -3.64 -0.06 -30.43 16 15 C 0.15 5.15 6.54 41.88 0.27 5.42 16 16 C -0.20 -6.00 9.68 22.83 0.22 -5.78 16 17 C 0.38 9.36 7.84 84.89 0.67 10.03 16 18 O -0.47 -8.73 13.58 -88.18 -1.20 -9.93 16 19 N -0.53 -12.99 9.35 -300.78 -2.81 -15.80 16 20 C 0.36 8.92 7.31 138.80 1.01 9.94 16 21 C -0.12 -2.02 6.23 -11.54 -0.07 -2.10 16 22 C -0.14 -1.80 10.01 30.62 0.31 -1.49 16 23 C -0.15 -1.99 10.24 30.62 0.31 -1.68 16 24 N -0.48 -14.25 4.13 -177.27 -0.73 -14.98 16 25 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.05 1.58 6.34 -2.39 -0.02 1.57 16 28 H 0.10 3.33 5.62 -2.39 -0.01 3.32 16 29 H 0.07 2.41 8.04 -2.39 -0.02 2.39 16 30 H 0.00 0.14 7.50 -2.39 -0.02 0.12 16 31 H 0.03 1.68 8.07 -2.39 -0.02 1.66 16 32 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 33 H 0.16 4.84 7.74 -2.91 -0.02 4.82 16 34 H 0.43 3.17 9.06 -74.06 -0.67 2.50 16 35 H 0.15 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.10 1.51 7.53 -2.39 -0.02 1.50 16 37 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -75.22 335.27 1.59 -73.63 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 0.41 Total: 9.46 kcal Atomic # 6 Polarization: 19.24 SS G_CDS: 5.70 Total: 24.94 kcal Atomic # 7 Polarization: -109.35 SS G_CDS: -5.30 Total: -114.65 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -1.26 Total: -40.36 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -75.22 1.59 -73.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326781935.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.206 kcal (2) G-P(sol) polarization free energy of solvation -75.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds