Wall clock time and date at job start Tue Mar 31 2020 06:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34405 * 125.74348 * 2 1 4 4 C 1.38284 * 107.36498 * 180.02562 * 3 2 1 5 5 C 1.46967 * 126.44174 * 179.97438 * 4 3 2 6 6 C 1.35041 * 119.99973 * 179.97438 * 5 4 3 7 7 C 1.41832 * 119.99898 * 179.97438 * 6 5 4 8 8 O 1.21740 * 119.99905 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00153 * 180.02562 * 7 6 5 10 10 C 1.47290 * 125.79121 * 359.97438 * 9 7 6 11 11 C 1.54325 * 107.30599 * 178.92556 * 10 9 7 12 12 C 1.55154 * 102.94303 * 337.81911 * 11 10 9 13 13 O 1.42902 * 111.00280 * 277.42723 * 12 11 10 14 14 C 1.50701 * 111.00686 * 153.57472 * 12 11 10 15 15 H 1.07995 * 119.99521 * 6.35148 * 14 12 11 16 16 C 1.37872 * 119.99963 * 186.34633 * 14 12 11 17 17 N 1.31510 * 120.00509 * 0.02562 * 16 14 12 18 18 Si 1.86806 * 119.99739 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47182 * 60.00102 * 18 16 14 20 20 H 1.48502 * 109.46910 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47072 * 300.00280 * 18 16 14 22 22 C 1.47425 * 125.65138 * 179.97438 * 9 7 6 23 23 C 1.41437 * 107.11671 * 0.22418 * 4 3 2 24 24 N 1.30439 * 108.03809 * 359.61987 * 23 4 3 25 25 H 1.09001 * 109.47172 * 90.00245 * 1 2 3 26 26 H 1.08995 * 109.47368 * 210.00054 * 1 2 3 27 27 H 1.09004 * 109.47311 * 330.00433 * 1 2 3 28 28 H 1.08005 * 126.31722 * 0.02562 * 3 2 1 29 29 H 1.08003 * 120.00025 * 359.97438 * 5 4 3 30 30 H 1.07995 * 119.99912 * 0.02562 * 6 5 4 31 31 H 1.09004 * 109.85762 * 59.50172 * 10 9 7 32 32 H 1.08999 * 109.87327 * 298.36024 * 10 9 7 33 33 H 1.09002 * 110.72180 * 219.45147 * 11 10 9 34 34 H 1.08994 * 110.87038 * 96.25177 * 11 10 9 35 35 H 0.96703 * 114.00194 * 173.65090 * 13 12 11 36 36 H 0.97002 * 120.00357 * 179.97438 * 17 16 14 37 37 H 1.09002 * 110.36696 * 85.25946 * 22 9 7 38 38 H 1.08995 * 110.36608 * 323.04783 * 22 9 7 39 39 H 1.08000 * 125.97917 * 179.77296 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2501 1.0909 0.0000 4 6 3.5624 0.6549 -0.0006 5 6 4.7636 1.5016 -0.0013 6 6 5.9893 0.9348 -0.0013 7 6 7.1485 1.7519 -0.0026 8 8 7.0386 2.9644 -0.0042 9 7 8.3718 1.1862 -0.0031 10 6 8.6521 -0.2597 -0.0020 11 6 10.1857 -0.4300 -0.0308 12 6 10.6744 0.9207 -0.6173 13 8 10.5937 0.9186 -2.0441 14 6 12.0752 1.2338 -0.1582 15 1 12.6333 0.5037 0.4091 16 6 12.6441 2.4523 -0.4624 17 7 11.9644 3.3415 -1.1528 18 14 14.3808 2.8401 0.1062 19 1 15.3238 1.8494 -0.4720 20 1 14.7564 4.2040 -0.3453 21 1 14.4424 2.7754 1.5886 22 6 9.6545 1.9129 -0.0050 23 6 3.5312 -0.7591 -0.0062 24 7 2.2824 -1.1357 -0.0006 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.9174 2.1184 0.0004 29 1 4.6661 2.5772 -0.0019 30 1 6.0867 -0.1408 -0.0012 31 1 8.2110 -0.7231 -0.8845 32 1 8.2454 -0.7153 0.9009 33 1 10.4697 -1.2580 -0.6804 34 1 10.5789 -0.5785 0.9749 35 1 10.7957 1.7724 -2.4507 36 1 12.3646 4.1989 -1.3665 37 1 9.9439 2.1743 1.0129 38 1 9.5815 2.8097 -0.6200 39 1 4.3910 -1.4127 -0.0115 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327170445.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:00 Heat of formation + Delta-G solvation = 15.655355 kcal Electronic energy + Delta-G solvation = -22500.667691 eV Core-core repulsion = 19024.650254 eV Total energy + Delta-G solvation = -3476.017437 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.33770 -39.36271 -37.21238 -34.41127 -34.13114 -32.63859 -32.18253 -30.31845 -29.64046 -27.82341 -26.94990 -25.26540 -23.40110 -22.12325 -21.29407 -20.08316 -19.53523 -18.02755 -17.27440 -17.01857 -16.46592 -15.77732 -15.23741 -14.88951 -14.78438 -14.60116 -14.37978 -13.71427 -13.35643 -13.22690 -13.02581 -12.97194 -12.78665 -12.61876 -12.10012 -11.71483 -11.58239 -11.37995 -10.98645 -10.80184 -10.73688 -10.54071 -10.45311 -10.30288 -10.13269 -9.76676 -9.34260 -9.24562 -8.64454 -8.30391 -8.04042 -7.59495 -6.22589 -4.32443 1.02529 1.81632 2.18014 2.92887 3.25214 3.30924 3.32679 3.86846 4.05097 4.19469 4.31113 4.51471 4.72095 4.76862 4.98962 5.03517 5.09394 5.20819 5.37544 5.46475 5.51353 5.74215 5.74896 5.89748 6.11389 6.20559 6.33281 6.51733 6.57834 6.58229 6.70213 6.80070 6.94349 7.15214 7.33181 7.40736 7.44329 7.79021 8.07999 8.38551 8.70645 8.91659 9.35036 9.43264 10.84350 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.042696 B = 0.002922 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.649007 B = 9580.445457 C = 9941.270688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.370 5.370 3 C 0.079 3.921 4 C -0.223 4.223 5 C 0.016 3.984 6 C -0.216 4.216 7 C 0.555 3.445 8 O -0.565 6.565 9 N -0.607 5.607 10 C 0.105 3.895 11 C -0.119 4.119 12 C 0.248 3.752 13 O -0.583 6.583 14 C -0.538 4.538 15 H 0.065 0.935 16 C 0.071 3.929 17 N -0.892 5.892 18 Si 0.903 3.097 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.095 3.905 23 C 0.074 3.926 24 N -0.303 5.303 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.183 0.817 29 H 0.133 0.867 30 H 0.120 0.880 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.381 0.619 36 H 0.270 0.730 37 H 0.059 0.941 38 H 0.086 0.914 39 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.481 -5.988 2.680 20.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.150 5.150 3 C -0.070 4.070 4 C -0.235 4.235 5 C -0.006 4.006 6 C -0.238 4.238 7 C 0.347 3.653 8 O -0.448 6.448 9 N -0.339 5.339 10 C -0.018 4.018 11 C -0.156 4.156 12 C 0.207 3.793 13 O -0.391 6.391 14 C -0.576 4.576 15 H 0.084 0.916 16 C -0.132 4.132 17 N -0.531 5.531 18 Si 0.730 3.270 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.027 4.027 23 C -0.113 4.113 24 N -0.123 5.123 25 H 0.095 0.905 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.200 0.800 29 H 0.151 0.849 30 H 0.138 0.862 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.230 0.770 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -20.736 -6.791 2.711 21.987 hybrid contribution 1.603 1.512 0.216 2.214 sum -19.132 -5.278 2.926 20.062 Atomic orbital electron populations 1.21921 0.73922 1.04721 1.03654 1.48328 1.06971 1.03966 1.55689 1.23137 0.90635 0.93514 0.99679 1.19523 0.92630 0.93153 1.18147 1.21527 0.89444 0.98781 0.90820 1.21848 0.92856 1.00225 1.08836 1.16715 0.82911 0.87791 0.77851 1.90773 1.86793 1.14652 1.52545 1.48740 1.06557 1.07892 1.70707 1.22037 0.97985 0.81895 0.99871 1.22619 0.92056 0.99767 1.01205 1.19626 0.91942 0.88492 0.79218 1.86103 1.93070 1.38929 1.21013 1.21425 0.99114 1.01047 1.36048 0.91633 1.25078 0.98322 0.95772 0.94071 1.69713 1.37496 1.07457 1.38405 0.86474 0.83872 0.77459 0.79145 1.20032 1.21126 1.20056 1.23202 0.80458 0.97890 1.01145 1.24186 0.94934 0.94551 0.97613 1.77135 1.02169 1.07894 1.25100 0.90466 0.89097 0.89245 0.80016 0.84921 0.86246 0.92167 0.92667 0.90799 0.90440 0.76969 0.91991 0.92303 0.89577 0.79390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.46 11.44 59.84 0.68 1.14 16 2 N -0.37 -3.46 3.98 -67.50 -0.27 -3.73 16 3 C 0.08 0.73 11.52 -16.41 -0.19 0.54 16 4 C -0.22 -2.62 6.08 -105.13 -0.64 -3.26 16 5 C 0.02 0.22 9.64 -37.18 -0.36 -0.14 16 6 C -0.22 -3.39 8.91 -39.35 -0.35 -3.74 16 7 C 0.56 11.48 7.62 -14.89 -0.11 11.36 16 8 O -0.57 -13.61 16.36 5.15 0.08 -13.53 16 9 N -0.61 -12.90 3.34 -173.64 -0.58 -13.48 16 10 C 0.11 1.88 6.01 -2.92 -0.02 1.86 16 11 C -0.12 -2.37 6.13 -24.90 -0.15 -2.52 16 12 C 0.25 6.06 0.87 -89.63 -0.08 5.98 16 13 O -0.58 -15.01 13.16 -35.23 -0.46 -15.48 16 14 C -0.54 -14.12 8.27 -34.44 -0.28 -14.40 16 15 H 0.07 1.68 7.79 -52.49 -0.41 1.27 16 16 C 0.07 1.87 5.29 -17.82 -0.09 1.78 16 17 N -0.89 -24.12 10.69 55.43 0.59 -23.53 16 18 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 C 0.09 2.33 5.38 -2.53 -0.01 2.32 16 23 C 0.07 0.85 11.39 -16.93 -0.19 0.66 16 24 N -0.30 -3.62 12.49 30.89 0.39 -3.23 16 25 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.18 1.03 8.06 -52.48 -0.42 0.61 16 29 H 0.13 1.86 7.45 -52.48 -0.39 1.47 16 30 H 0.12 1.58 6.15 -52.49 -0.32 1.26 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.08 1.46 8.03 -51.93 -0.42 1.04 16 35 H 0.38 10.07 7.57 45.56 0.34 10.42 16 36 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.06 1.50 8.03 -51.93 -0.42 1.08 16 38 H 0.09 2.38 7.32 -51.93 -0.38 2.00 16 39 H 0.19 1.77 7.31 -52.49 -0.38 1.39 16 LS Contribution 334.28 15.07 5.04 5.04 Total: -1.00 -33.27 334.28 -6.50 -39.77 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -4.47 Total: 11.08 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -1.80 Total: 1.59 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: 0.13 Total: -43.97 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.38 Total: -29.01 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.27 -6.50 -39.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327170445.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.423 kcal (2) G-P(sol) polarization free energy of solvation -33.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds