Wall clock time and date at job start Tue Mar 31 2020 06:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34405 * 125.74348 * 2 1 4 4 C 1.38284 * 107.36498 * 180.02562 * 3 2 1 5 5 C 1.46967 * 126.44174 * 179.97438 * 4 3 2 6 6 C 1.35041 * 119.99973 * 179.97438 * 5 4 3 7 7 C 1.41832 * 119.99898 * 179.97438 * 6 5 4 8 8 O 1.21740 * 119.99905 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00153 * 180.02562 * 7 6 5 10 10 C 1.47290 * 125.79121 * 359.97438 * 9 7 6 11 11 C 1.54325 * 107.30599 * 178.92556 * 10 9 7 12 12 C 1.55154 * 102.94303 * 337.81911 * 11 10 9 13 13 O 1.42902 * 111.00280 * 277.42723 * 12 11 10 14 14 C 1.50701 * 111.00686 * 153.57472 * 12 11 10 15 15 H 1.07995 * 119.99521 * 6.35148 * 14 12 11 16 16 C 1.37872 * 119.99963 * 186.34633 * 14 12 11 17 17 N 1.31510 * 120.00509 * 0.02562 * 16 14 12 18 18 Si 1.86806 * 119.99739 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47182 * 60.00102 * 18 16 14 20 20 H 1.48502 * 109.46910 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47072 * 300.00280 * 18 16 14 22 22 C 1.47425 * 125.65138 * 179.97438 * 9 7 6 23 23 C 1.41437 * 107.11671 * 0.22418 * 4 3 2 24 24 N 1.30439 * 108.03809 * 359.61987 * 23 4 3 25 25 H 1.09001 * 109.47172 * 90.00245 * 1 2 3 26 26 H 1.08995 * 109.47368 * 210.00054 * 1 2 3 27 27 H 1.09004 * 109.47311 * 330.00433 * 1 2 3 28 28 H 1.08005 * 126.31722 * 0.02562 * 3 2 1 29 29 H 1.08003 * 120.00025 * 359.97438 * 5 4 3 30 30 H 1.07995 * 119.99912 * 0.02562 * 6 5 4 31 31 H 1.09004 * 109.85762 * 59.50172 * 10 9 7 32 32 H 1.08999 * 109.87327 * 298.36024 * 10 9 7 33 33 H 1.09002 * 110.72180 * 219.45147 * 11 10 9 34 34 H 1.08994 * 110.87038 * 96.25177 * 11 10 9 35 35 H 0.96703 * 114.00194 * 173.65090 * 13 12 11 36 36 H 0.97002 * 120.00357 * 179.97438 * 17 16 14 37 37 H 1.09002 * 110.36696 * 85.25946 * 22 9 7 38 38 H 1.08995 * 110.36608 * 323.04783 * 22 9 7 39 39 H 1.08000 * 125.97917 * 179.77296 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2501 1.0909 0.0000 4 6 3.5624 0.6549 -0.0006 5 6 4.7636 1.5016 -0.0013 6 6 5.9893 0.9348 -0.0013 7 6 7.1485 1.7519 -0.0026 8 8 7.0386 2.9644 -0.0042 9 7 8.3718 1.1862 -0.0031 10 6 8.6521 -0.2597 -0.0020 11 6 10.1857 -0.4300 -0.0308 12 6 10.6744 0.9207 -0.6173 13 8 10.5937 0.9186 -2.0441 14 6 12.0752 1.2338 -0.1582 15 1 12.6333 0.5037 0.4091 16 6 12.6441 2.4523 -0.4624 17 7 11.9644 3.3415 -1.1528 18 14 14.3808 2.8401 0.1062 19 1 15.3238 1.8494 -0.4720 20 1 14.7564 4.2040 -0.3453 21 1 14.4424 2.7754 1.5886 22 6 9.6545 1.9129 -0.0050 23 6 3.5312 -0.7591 -0.0062 24 7 2.2824 -1.1357 -0.0006 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.9174 2.1184 0.0004 29 1 4.6661 2.5772 -0.0019 30 1 6.0867 -0.1408 -0.0012 31 1 8.2110 -0.7231 -0.8845 32 1 8.2454 -0.7153 0.9009 33 1 10.4697 -1.2580 -0.6804 34 1 10.5789 -0.5785 0.9749 35 1 10.7957 1.7724 -2.4507 36 1 12.3646 4.1989 -1.3665 37 1 9.9439 2.1743 1.0129 38 1 9.5815 2.8097 -0.6200 39 1 4.3910 -1.4127 -0.0115 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327170445.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:59 Heat of formation + Delta-G solvation = -8.880276 kcal Electronic energy + Delta-G solvation = -22501.731635 eV Core-core repulsion = 19024.650254 eV Total energy + Delta-G solvation = -3477.081382 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.11965 -40.98569 -38.95548 -35.97241 -35.33890 -34.21707 -33.51259 -31.88542 -30.68013 -29.50302 -27.89949 -26.87096 -24.82587 -23.42911 -22.07612 -21.47468 -21.03123 -19.39915 -19.06697 -18.31438 -17.58545 -17.08874 -16.58081 -16.41219 -16.36706 -16.08855 -15.38895 -14.98642 -14.77174 -14.59384 -14.39494 -14.16852 -13.65906 -13.57568 -13.49894 -13.26100 -13.16799 -12.91671 -12.79811 -12.47776 -12.30893 -12.24695 -12.04705 -11.62828 -11.32875 -11.16866 -10.93175 -10.63175 -10.50096 -10.27021 -9.45175 -8.86184 -8.22302 -6.39963 -0.01928 0.98574 1.44334 1.44643 1.53098 1.58394 1.90055 2.29890 2.42689 2.67397 3.03435 3.50051 3.82514 3.88230 3.96014 4.13836 4.19435 4.23991 4.34936 4.41699 4.44981 4.48289 4.69694 4.72340 4.73303 4.77521 4.80539 5.09532 5.14463 5.27786 5.39152 5.47193 5.49896 5.52557 5.67002 5.77862 5.99990 6.10164 6.62403 6.66541 6.82012 7.28570 7.33414 7.36616 8.82662 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.042696 B = 0.002922 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.649007 B = 9580.445457 C = 9941.270688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.368 5.368 3 C 0.104 3.896 4 C -0.260 4.260 5 C 0.056 3.944 6 C -0.249 4.249 7 C 0.550 3.450 8 O -0.616 6.616 9 N -0.616 5.616 10 C 0.108 3.892 11 C -0.114 4.114 12 C 0.231 3.769 13 O -0.587 6.587 14 C -0.557 4.557 15 H 0.069 0.931 16 C 0.024 3.976 17 N -0.916 5.916 18 Si 0.965 3.035 19 H -0.269 1.269 20 H -0.286 1.286 21 H -0.270 1.270 22 C 0.109 3.891 23 C 0.072 3.928 24 N -0.334 5.334 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.120 0.880 28 H 0.221 0.779 29 H 0.126 0.874 30 H 0.146 0.854 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.372 0.628 36 H 0.268 0.732 37 H 0.039 0.961 38 H 0.044 0.956 39 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.538 -7.397 3.366 23.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.146 5.146 3 C -0.047 4.047 4 C -0.271 4.271 5 C 0.034 3.966 6 C -0.270 4.270 7 C 0.345 3.655 8 O -0.502 6.502 9 N -0.347 5.347 10 C -0.014 4.014 11 C -0.151 4.151 12 C 0.190 3.810 13 O -0.395 6.395 14 C -0.595 4.595 15 H 0.087 0.913 16 C -0.177 4.177 17 N -0.555 5.555 18 Si 0.790 3.210 19 H -0.194 1.194 20 H -0.212 1.212 21 H -0.195 1.195 22 C -0.015 4.015 23 C -0.114 4.114 24 N -0.154 5.154 25 H 0.109 0.891 26 H 0.112 0.888 27 H 0.139 0.861 28 H 0.237 0.763 29 H 0.144 0.856 30 H 0.164 0.836 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.220 0.780 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -22.826 -8.273 3.404 24.517 hybrid contribution 1.988 1.981 -0.006 2.806 sum -20.839 -6.292 3.397 22.031 Atomic orbital electron populations 1.22343 0.71244 1.06480 1.05110 1.48771 1.08525 1.03348 1.53917 1.23741 0.89800 0.95045 0.96097 1.19478 0.92817 0.93225 1.21591 1.21593 0.89796 0.98704 0.86477 1.21603 0.91179 1.00793 1.13443 1.17505 0.83807 0.87704 0.76453 1.90731 1.87432 1.16946 1.55124 1.48802 1.05628 1.09103 1.71149 1.22216 0.96610 0.79975 1.02616 1.22633 0.93544 0.97366 1.01580 1.19878 0.91435 0.91181 0.78466 1.86094 1.93056 1.38299 1.22018 1.21783 1.00213 1.01324 1.36170 0.91288 1.25860 1.01919 0.95711 0.94190 1.69850 1.38821 1.07600 1.39267 0.85503 0.79539 0.77118 0.78831 1.19388 1.21165 1.19461 1.22728 0.82842 0.96953 0.98962 1.24478 0.95424 0.94753 0.96764 1.77109 1.02588 1.09458 1.26277 0.89117 0.88813 0.86137 0.76276 0.85631 0.83628 0.90485 0.88791 0.89632 0.89313 0.77973 0.92228 0.94279 0.93785 0.78105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.49 11.44 127.77 1.46 1.95 16 2 N -0.37 -5.67 3.98 -367.46 -1.46 -7.13 16 3 C 0.10 1.56 11.52 84.31 0.97 2.53 16 4 C -0.26 -5.47 6.08 -20.19 -0.12 -5.59 16 5 C 0.06 1.47 9.64 23.82 0.23 1.70 16 6 C -0.25 -7.60 8.91 22.42 0.20 -7.40 16 7 C 0.55 23.16 7.62 85.13 0.65 23.81 16 8 O -0.62 -31.01 16.36 -4.48 -0.07 -31.08 16 9 N -0.62 -26.48 3.34 -821.46 -2.74 -29.22 16 10 C 0.11 3.65 6.01 86.68 0.52 4.17 16 11 C -0.11 -4.40 6.13 31.78 0.19 -4.20 16 12 C 0.23 11.48 0.87 -10.15 -0.01 11.48 16 13 O -0.59 -31.02 13.16 -148.98 -1.96 -32.98 16 14 C -0.56 -29.61 8.27 25.60 0.21 -29.40 16 15 H 0.07 3.53 7.79 -2.91 -0.02 3.50 16 16 C 0.02 1.29 5.29 84.65 0.45 1.73 16 17 N -0.92 -51.42 10.69 21.44 0.23 -51.19 16 18 Si 0.96 42.57 29.54 68.60 2.03 44.60 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 20 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 22 C 0.11 5.58 5.38 86.85 0.47 6.05 16 23 C 0.07 1.51 11.39 85.69 0.98 2.48 16 24 N -0.33 -7.20 12.49 -56.18 -0.70 -7.90 16 25 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.09 0.51 8.14 -2.39 -0.02 0.50 16 27 H 0.12 -0.04 8.14 -2.39 -0.02 -0.06 16 28 H 0.22 1.44 8.06 -2.91 -0.02 1.42 16 29 H 0.13 3.45 7.45 -2.91 -0.02 3.43 16 30 H 0.15 3.55 6.15 -2.91 -0.02 3.53 16 31 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 32 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 34 H 0.09 3.20 8.03 -2.39 -0.02 3.18 16 35 H 0.37 20.63 7.57 -74.06 -0.56 20.07 16 36 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 37 H 0.04 2.10 8.03 -2.39 -0.02 2.08 16 38 H 0.04 2.59 7.32 -2.39 -0.02 2.58 16 39 H 0.20 3.35 7.31 -2.91 -0.02 3.33 16 Total: -1.00 -75.67 334.28 2.02 -73.64 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: 0.51 Total: 31.96 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 6.20 Total: 9.30 kcal Atomic # 7 Polarization: -90.76 SS G_CDS: -4.68 Total: -95.43 kcal Atomic # 8 Polarization: -62.03 SS G_CDS: -2.03 Total: -64.07 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -75.67 2.02 -73.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327170445.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.764 kcal (2) G-P(sol) polarization free energy of solvation -75.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds